Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007328

Physical Location & Seq

Genomic Coordinates Forward (+)

22051056 .. 22051391

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG198000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGACTCCTACGAGCTTTCTGCCGGAAATATTCGGCGACTGGTCGGATTTCTCTGCCGACACTCATCTCGACGTGGTCCAGGTGTTTAAGCTGATCGACAGAGACAACGACGGAGTCGTGTCGAGAAAAGAGCTGGAGGCTCTGCTGAAGCGGCTGGGAACGGAGCCGCCGAGCCAGGAAGAGGTGGCAATGATGTTGAGCGAGGTGGACCGGGACGGCGACGGCTGCATACCCCTGGATGCCTTGTTGCACCGATTCGGACCGGCTTGCGAATCGGCGGCCGACTCGGAGCTGCGGGAGGACTTTGCTCTTATGATGGAGCTGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0043167 GO:0043169 GO:0043207 GO:0044464 GO:0046872 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

111

Amino Acids

12.39

Weight (kDa)

4.24

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	26 - 53	2.5e-06	EF hand domain
EF-hand_6	PF13405	27 - 54	5.2e-07	EF-hand domain
EF-hand_7	PF13499	28 - 81	2.4e-11	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41410
fragaria_vesca	FvH4_6g25060
malus_domestica	MD12G1087300.v1.1 MD14G1069200.v1.1 MD14G1083200.v1.1
prunus_persica	Prupe.7G047300_v2.0.a1
pyrus_communis	pycom07g14940 pycom12g07550 pycom14g07230
rosa_chinensis	RchiOBHm_Chr2g0124821
rosa_laevigata	RLG00000018825
rosa_multiflora	Rmu_sc0000507.1_g000002 Rmu_sc0002939.1_g000021
rosa_roxburghii	Rroxscaffold_1G00049520 Rroxscaffold_2G00119640
rosa_rugosa	Rorug02G0252900
rosa_samantha	Rh2AG312400 Rh2BG320600 Rh2CG300600 Rh2DG337900 Rh4BG103800 Rh5BG198000 Rh5BG310900 Rh5DG321400
rosa_wichuraiana	Rw2G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	154, 170, 281, 298
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	184
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	3 cut(s)	81, 177, 237
AluBI	AGCT	5 cut(s)	18, 94, 136, 295, 325
AluI	AGCT	5 cut(s)	18, 94, 136, 295, 325
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	228, 295, 325
AspS9I	GGNCC	3 cut(s)	79, 211, 263
AsuC2I	CCSGG	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	79, 211, 263
BbvI	GCAGC	3 cut(s)	215, 282, 312
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	2 cut(s)	235, 241
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	3 cut(s)	83, 179, 239
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	326
BisI	GCNGC	6 cut(s)	155, 170, 229, 282, 296, 326
BlsI	GCNGC	6 cut(s)	156, 171, 230, 283, 297, 327
Bme1390I	CCNGG	4 cut(s)	83, 179, 215, 239
Bme18I	GGWCC	3 cut(s)	79, 211, 263
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	79, 211, 263
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	4 cut(s)	83, 179, 215, 239
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	83, 179, 239
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	215, 282, 312
BseYI	CCCAGC	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	26, 214, 266
BslFI	GGGAC	2 cut(s)	19, 230
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	19, 230
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	4 cut(s)	154, 170, 281, 298
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	83, 179, 239
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 228
BstNI	CCWGG	3 cut(s)	83, 179, 239
BstSCI	CCNGG	4 cut(s)	81, 177, 213, 237
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	215, 282, 312
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	79, 211, 263
CpoI	CGGWCCG	1 cut(s)	263
CspI	CGGWCCG	1 cut(s)	263
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	282
Eco47I	GGWCC	3 cut(s)	79, 211, 263
Eco52I	CGGCCG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	81, 177, 237
FaiI	YATR	2 cut(s)	233, 317
FaqI	GGGAC	2 cut(s)	19, 230
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	155, 170, 229, 282, 296, 326
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	6 cut(s)	155, 170, 229, 282, 296, 326
GluI	GCNGC	6 cut(s)	155, 170, 229, 282, 296, 326
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	3 cut(s)	26, 214, 266
HinfI	GANTC	5 cut(s)	7, 117, 258, 275, 287
HpaII	CCGG	3 cut(s)	26, 214, 266
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	49, 263, 292
Hpy188III	TCNNGA	2 cut(s)	71, 126
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	3 cut(s)	77, 116, 227
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	231, 253, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 228
HpySE526I	ACGT	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	3 cut(s)	166, 292, 322
Lsp1109I	GCAGC	3 cut(s)	215, 282, 312
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	75
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	126, 281
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	133, 178, 199, 295
MseI	TTAA	1 cut(s)	90
MspI	CCGG	3 cut(s)	26, 214, 266
MspR9I	CCNGG	4 cut(s)	83, 179, 215, 239
MvaI	CCWGG	3 cut(s)	83, 179, 239
MwoI	GCNNNNNNNGC	2 cut(s)	154, 228
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 170
PfeI	GAWTC	2 cut(s)	258, 275
PflFI	GACNNNGTC	2 cut(s)	77, 116
PkrI	GCNGC	6 cut(s)	156, 171, 230, 283, 297, 327
PleI	GAGTC	2 cut(s)	125, 281
PpsI	GAGTC	2 cut(s)	125, 281
Psp6I	CCWGG	3 cut(s)	81, 177, 237
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	3 cut(s)	81, 177, 237
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	3 cut(s)	79, 211, 263
PstI	CTGCAG	1 cut(s)	330
PsyI	GACNNNGTC	2 cut(s)	77, 116
Rsr2I	CGGWCCG	1 cut(s)	263
RsrII	CGGWCCG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	6 cut(s)	155, 170, 229, 282, 296, 326
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	3 cut(s)	79, 211, 263
SchI	GAGTC	2 cut(s)	126, 281
ScrFI	CCNGG	4 cut(s)	83, 179, 215, 239
SetI	ASST	9 cut(s)	20, 78, 87, 96, 138, 189, 210, 297, 327
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	326
SinI	GGWCC	3 cut(s)	79, 211, 263
SsiI	CCGC	4 cut(s)	154, 170, 281, 298
SspI	AATATT	1 cut(s)	33
StyD4I	CCNGG	4 cut(s)	81, 177, 213, 237
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	72, 99, 125
TauI	GCSGC	3 cut(s)	157, 172, 284
TfiI	GAWTC	2 cut(s)	258, 275
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	3 cut(s)	228, 295, 325
TspGWI	ACGGA	2 cut(s)	129, 179
Tth111I	GACNNNGTC	2 cut(s)	77, 116
VpaK11BI	GGWCC	3 cut(s)	79, 211, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.