Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

21535522 .. 21539118

Gene Structure 3597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G257600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAGTTGGTAGTGTTTATTACTCAACTGTACGTTCTGTGCCACCTTGTCTTGGCCGATCAGATCTTCCCAGCTCACCTAGGGAGCGGAAGCCCAGAATTTTTCAGTGGCACATTTAGTCGCAGCTCTCGTGAACCAAAATACAAGATTGAATTCCATCCTGAAGACTCACCTTTTCATCCTGAGGATGGTCAAGAGTCTGTGGTTATGCCAAATGACAATGGACAAAATTTTATATGTTATTTGCCTAAGGTGGAGGAAGCCAAGAGTGGGAAGCAAGTCCTTCAGCATAATATAAGCAGCGTGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACACCAGATGAGCTGCTTGAAGTACTCAGGGAAGAATGCTTTATCAGACAAGAGGGTTGGTGGTCATATGAGTTTTGCTATCAGAAGAGATTACGGCAAATTCATTTGGAAGATGAGAAGGTGGTTCAGGAATTTATTCTGGGTATATATGATGCAGAGGCCACTGCTGCTGTCAACCAGAATCTTTCTGACATATCTAGACTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTATCATGCTCACCAATATACAAATGGGACTACATGTGATCTTACAGACCAACAACGGGCGACTGAGGTGAGATTTGTGTGCTCAGAGGGCATAGCTATGATTAATTCAATTACAGAGATAGCCACTTGCAAGTATGCAGTTACAATTCAGTGCCCCACACTTTGCAAGCACCCAGCATTCCTGGCAGAGAGACCAGTATGGCAGGCCATTAACTGTAATGTGCTTCCCAAGGATTACAAGGAAACCAAAGCAGAGGAAGAATCTAATATCAAGCAGATAGTTTTGGGCGCAGACACAGACAGTGAATCTCCATCTAATGATGTTTCAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

304

Amino Acids

34.64

Weight (kDa)

5.1

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	5 cut(s)	98, 152, 229, 438, 470
AcuI	CTGAAG	2 cut(s)	183, 269
AfaI	GTAC	2 cut(s)	32, 363
AfiI	CCNNNNNNNGG	4 cut(s)	52, 188, 270, 631
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	3 cut(s)	152, 359, 684
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	4 cut(s)	74, 126, 352, 671
AluI	AGCT	4 cut(s)	74, 126, 352, 671
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	760
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	3 cut(s)	54, 498, 780
ApeKI	GCWGC	4 cut(s)	123, 300, 352, 506
ApoI	RAATTY	5 cut(s)	98, 152, 229, 438, 470
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	866
AsuHPI	GGTGA	4 cut(s)	68, 162, 578, 655
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	2 cut(s)	183, 249
BaeGI	GKGCMC	1 cut(s)	731
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	2 cut(s)	171, 344
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	4 cut(s)	135, 312, 339, 493
BccI	CCATC	3 cut(s)	165, 182, 895
BceAI	ACGGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	2 cut(s)	80, 537
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	4 cut(s)	124, 301, 353, 507
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	4 cut(s)	125, 302, 354, 508
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	758
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	2 cut(s)	481, 553
BpiI	GAAGAC	2 cut(s)	171, 344
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	2 cut(s)	79, 804
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 188, 270, 631
Bse1I	ACTGG	1 cut(s)	770
Bse21I	CCTNAGG	2 cut(s)	183, 249
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	79, 804
BseGI	GGATG	3 cut(s)	157, 178, 193
BseLI	CCNNNNNNNGG	4 cut(s)	52, 188, 270, 631
BseMII	CTCAG	5 cut(s)	174, 309, 379, 630, 672
BseNI	ACTGG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	4 cut(s)	135, 312, 339, 493
BseYI	CCCAGC	2 cut(s)	70, 748
BshFI	GGCC	3 cut(s)	56, 500, 782
BsiHKAI	GWGCWC	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	4 cut(s)	52, 188, 270, 631
BsmAI	GTCTC	1 cut(s)	760
BsmFI	GGGAC	1 cut(s)	616
BsmI	GAATGC	2 cut(s)	380, 752
BsnI	GGCC	3 cut(s)	56, 500, 782
Bso31I	GGTCTC	1 cut(s)	760
Bsp1286I	GDGCHC	2 cut(s)	659, 731
Bsp143I	GATC	4 cut(s)	58, 63, 547, 613
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	56, 500, 782
BspCNI	CTCAG	5 cut(s)	175, 310, 378, 631, 671
BspPI	GGATC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	760
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	79, 804
BssMI	GATC	4 cut(s)	58, 63, 547, 613
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	79, 804
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	3 cut(s)	30, 791, 878
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	743, 780
BstDEI	CTNAG	6 cut(s)	183, 249, 318, 365, 639, 658
BstF5I	GGATG	3 cut(s)	157, 178, 193
BstHHI	GCGC	1 cut(s)	866
BstKTI	GATC	4 cut(s)	61, 66, 550, 616
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	4 cut(s)	58, 63, 547, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 663, 758
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	756
BstSLI	GKGCMC	1 cut(s)	731
BstV1I	GCAGC	4 cut(s)	135, 312, 339, 493
BstV2I	GAAGAC	2 cut(s)	171, 344
BstX2I	RGATCY	2 cut(s)	63, 547
BstYI	RGATCY	2 cut(s)	63, 547
Bsu36I	CCTNAGG	2 cut(s)	183, 249
BsuRI	GGCC	3 cut(s)	56, 500, 782
BtsCI	GGATG	3 cut(s)	157, 178, 193
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	4 cut(s)	112, 501, 731, 883
Cac8I	GCNNGC	2 cut(s)	743, 780
CfoI	GCGC	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	31, 362
CviAII	CATG	2 cut(s)	581, 609
CviQI	GTAC	2 cut(s)	31, 362
DdeI	CTNAG	6 cut(s)	183, 249, 318, 365, 639, 658
DpnI	GATC	4 cut(s)	60, 65, 549, 615
DpnII	GATC	4 cut(s)	58, 63, 547, 613
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	79, 804
Eco31I	GGTCTC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	183, 269
Eco81I	CCTNAGG	2 cut(s)	183, 249
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	2 cut(s)	79, 804
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	2 cut(s)	79, 804
FaeI	CATG	2 cut(s)	584, 612
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	2 cut(s)	580, 608
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	124, 301, 353, 507
FokI	GGATG	3 cut(s)	144, 165, 200
Fsp4HI	GCNGC	4 cut(s)	124, 301, 353, 507
FspBI	CTAG	2 cut(s)	80, 537
GlaI	GCGC	1 cut(s)	865
GluI	GCNGC	4 cut(s)	124, 301, 353, 507
GsaI	CCCAGC	2 cut(s)	74, 752
HaeIII	GGCC	3 cut(s)	56, 500, 782
HhaI	GCGC	1 cut(s)	866
Hin1II	CATG	2 cut(s)	584, 612
Hin6I	GCGC	1 cut(s)	864
HinP1I	GCGC	1 cut(s)	864
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	167, 197, 520, 836, 881
HphI	GGTGA	4 cut(s)	68, 162, 578, 655
Hpy166II	GTNNAC	2 cut(s)	134, 514
Hpy188I	TCNGA	6 cut(s)	63, 386, 423, 529, 661, 904
Hpy188III	TCNNGA	6 cut(s)	131, 161, 182, 194, 467, 537
Hpy8I	GTNNAC	2 cut(s)	134, 514
HpyAV	CCTTC	2 cut(s)	293, 451
HpyCH4III	ACNGT	3 cut(s)	30, 791, 878
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	494, 566, 705, 713, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 663, 758
HpyF3I	CTNAG	6 cut(s)	183, 249, 318, 365, 639, 658
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	584, 612
HspAI	GCGC	1 cut(s)	864
Kzo9I	GATC	4 cut(s)	58, 63, 547, 613
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	4 cut(s)	135, 312, 339, 493
LweI	GCATC	2 cut(s)	481, 553
MaeI	CTAG	2 cut(s)	80, 537
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	4 cut(s)	60, 65, 549, 615
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	4 cut(s)	58, 63, 547, 613
MboII	GAAGA	7 cut(s)	58, 176, 349, 383, 436, 461, 845
MflI	RGATCY	2 cut(s)	63, 547
MhlI	GDGCHC	2 cut(s)	659, 731
MluCI	AATT	8 cut(s)	98, 152, 229, 438, 470, 679, 684, 720
MlyI	GAGTC	2 cut(s)	161, 206
MnlI	CCTC	7 cut(s)	178, 250, 385, 490, 634, 655, 823
Mph1103I	ATGCAT	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	5 cut(s)	330, 543, 678, 786, 910
MslI	CAYNNNNRTG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	758
Mva1269I	GAATGC	2 cut(s)	380, 752
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	506, 663, 758
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	4 cut(s)	58, 63, 547, 613
NlaIII	CATG	2 cut(s)	584, 612
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	612
PciI	ACATGT	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PctI	GAATGC	2 cut(s)	380, 752
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	520, 836, 881
PkrI	GCNGC	4 cut(s)	125, 302, 354, 508
PleI	GAGTC	2 cut(s)	161, 205
PpsI	GAGTC	2 cut(s)	161, 205
PscI	ACATGT	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	756
PspFI	CCCAGC	2 cut(s)	70, 748
PspGI	CCWGG	1 cut(s)	756
PsuI	RGATCY	2 cut(s)	63, 547
RsaI	GTAC	2 cut(s)	32, 363
RsaNI	GTAC	2 cut(s)	31, 362
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	330, 543, 678, 786, 910
SatI	GCNGC	4 cut(s)	124, 301, 353, 507
Sau3AI	GATC	4 cut(s)	58, 63, 547, 613
ScaI	AGTACT	1 cut(s)	363
SchI	GAGTC	2 cut(s)	161, 206
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	2 cut(s)	659, 731
SfaNI	GCATC	2 cut(s)	481, 553
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	8 cut(s)	98, 152, 229, 438, 470, 679, 684, 720
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	2 cut(s)	80, 537
StyD4I	CCNGG	1 cut(s)	756
StyI	CCWWGG	2 cut(s)	79, 804
TaaI	ACNGT	3 cut(s)	30, 791, 878
TaiI	ACGT	1 cut(s)	36
TasI	AATT	8 cut(s)	98, 152, 229, 438, 470, 679, 684, 720
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	520, 836, 881
Tru1I	TTAA	5 cut(s)	330, 543, 678, 786, 910
Tru9I	TTAA	5 cut(s)	330, 543, 678, 786, 910
TscAI	CASTG	4 cut(s)	112, 508, 731, 883
TseI	GCWGC	4 cut(s)	123, 300, 352, 506
TspDTI	ATGAA	4 cut(s)	17, 167, 350, 431
TspRI	CASTG	4 cut(s)	112, 508, 731, 883
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	5 cut(s)	98, 152, 229, 438, 470
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XmaJI	CCTAGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	80, 537
ZrmI	AGTACT	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.