Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Forward (+)

31205855 .. 31207238

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTGCATGTTGAGGAAGATGATCAGGAGTCTGTGGTTATGCTCAATAAGAATGGACAGAACTCTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGCAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTAAGAAACGAGTTAAGATGAAGATGCCAGATGAGCTGCTTGAAATACTCAAAGACCAATGCTTTATCAGACAAGAGGGTTGGTGGTCATATGAATTTTGCTATCAGAAGAGATTACGACAAATTCATTTGGAAGATGAGAAGGTGGTTCAGGAATTTGTTTTAGGTGTATATGTTGCTGAGGCCACTGCTGCATTCAACCAGAATCTCTCTGACATATCTTTGCCTAAAGATCCACGCTCGAAAGACGCATACCTTGTTGCCCTTATGTTTGAAGATGGATATCATATCCTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

149

Amino Acids

17.26

Weight (kDa)

4.99

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	68 - 121	6.5e-14	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	3 cut(s)	242, 270, 302
AgsI	TTSAA	3 cut(s)	191, 346, 422
AluBI	AGCT	2 cut(s)	95, 184
AluI	AGCT	2 cut(s)	95, 184
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	4 cut(s)	106, 132, 184, 338
ApoI	RAATTY	3 cut(s)	242, 270, 302
AxyI	CCTNAGG	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	118, 144, 171, 325
BccI	CCATC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	22
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	4 cut(s)	107, 133, 185, 339
BlsI	GCNGC	4 cut(s)	108, 134, 186, 340
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	429
Bse21I	CCTNAGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	118, 144, 171, 325
BshFI	GGCC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	22, 379
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	374
BssMI	GATC	2 cut(s)	22, 379
Bst6I	CTCTTC	1 cut(s)	251
BstDEI	CTNAG	4 cut(s)	81, 96, 150, 327
BstKTI	GATC	2 cut(s)	25, 382
BstMBI	GATC	2 cut(s)	22, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 338
BstNSI	RCATGY	2 cut(s)	11, 79
BstV1I	GCAGC	4 cut(s)	118, 144, 171, 325
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
CseI	GACGC	1 cut(s)	404
CviAII	CATG	3 cut(s)	8, 76, 136
CviJI	RGCY	4 cut(s)	95, 109, 184, 332
CviKI_1	RGCY	4 cut(s)	95, 109, 184, 332
DdeI	CTNAG	4 cut(s)	81, 96, 150, 327
DpnI	GATC	2 cut(s)	24, 381
DpnII	GATC	2 cut(s)	22, 379
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	431
FaeI	CATG	3 cut(s)	11, 79, 139
FatI	CATG	3 cut(s)	7, 75, 135
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	107, 133, 185, 339
Fsp4HI	GCNGC	4 cut(s)	107, 133, 185, 339
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	107, 133, 185, 339
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	332
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	11, 79, 139
HinfI	GANTC	2 cut(s)	29, 352
Hpy188I	TCNGA	3 cut(s)	218, 255, 361
Hpy188III	TCNNGA	3 cut(s)	26, 299, 439
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	7, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 338
HpyF3I	CTNAG	4 cut(s)	81, 96, 150, 327
Hsp92II	CATG	3 cut(s)	11, 79, 139
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	22, 379
LpnPI	CCDG	5 cut(s)	11, 131, 189, 284, 362
Lsp1109I	GCAGC	4 cut(s)	118, 144, 171, 325
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	24, 381
MboI	GATC	2 cut(s)	22, 379
MboII	GAAGA	5 cut(s)	29, 181, 268, 293, 434
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	5 cut(s)	111, 242, 270, 302, 442
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	7, 82, 217, 322
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	181, 338
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	2 cut(s)	22, 379
NlaIII	CATG	3 cut(s)	11, 79, 139
NspI	RCATGY	2 cut(s)	11, 79
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	108, 134, 186, 340
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	107, 133, 185, 339
Sau3AI	GATC	2 cut(s)	22, 379
SchI	GAGTC	1 cut(s)	38
SetI	ASST	6 cut(s)	87, 97, 186, 294, 316, 405
SfaNI	GCATC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	111, 242, 270, 302, 442
SspMI	CTAG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	389
TasI	AATT	5 cut(s)	111, 242, 270, 302, 442
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	4 cut(s)	106, 132, 184, 338
TspDTI	ATGAA	3 cut(s)	182, 255, 263
TspRI	CASTG	1 cut(s)	340
XapI	RAATTY	3 cut(s)	242, 270, 302
XceI	RCATGY	2 cut(s)	11, 79
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.