Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

15751657 .. 15755399

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGATTTTGCAGCTTTGGAACAGGTTTCACTACATGGCCATGGCAGATAACAGGCAAAGATACATGCCGTTGCCTGATGACCGTTTACCACCCAGAGGCCAACCCATGGCATATCCCGAGGCAGTTCTACTCGTCAATCCTATCGAGCCTGATCTTAAAGGAGAAGTGGATGACAAGTACCAATACTCATGTGACAACAAGGATAGCCGGGTACATGGGTGGATATGCGCTGATCCGCCGGTGGGATTGTGGCAAATTACACCCAGCAACGAGTTCCGATCTGGTGGACCTGTGAAGCAAAACCTTACCTCTCATGTTGGCCCTACCACCCTTGCGGTGTTTCTAAGCGCTCATTATTCCGGAGACGATCTGGTGCTAAAATTTGCAGCTGGTGAATATTGGAAGAAAGTTTTCGGCCCTGTTTTTATGTATGTCAATTCGGAATATGCAGGAAATGACCCGTTGATTTCACTATGGGAGGATGCTAAAATACAAATGATGATTGAAGTCCAAAGCTGGCCATACAGCTTCCCAGTGTCTGAAGATTTTCCCAAGTCGGACCAACGTGGTGACATTAGTGGTAGACTACTTATCCGAGACGGATATATTAGCGATGATTATATATCAGCCAATGGTGCATATGTCGGGTTAGCCCCGCCAGGAGACGTTGGGTCATGGCAAAGAGAGTGCAAGGACTATCAATTTTGGACAACAACAGACGAGGATGGCTACTTTTCTATCAATGACATACGGACTGGTGATTATATGCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

259

Amino Acids

29.51

Weight (kDa)

4.66

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	8 - 57	1.7e-19	Rhamnogalacturonate lyase family
fn3_3	PF14686	212 - 256	1.6e-16	Polysaccharide lyase family 4, domain II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	586
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	3 cut(s)	239, 338, 659
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	2 cut(s)	39, 521
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	2 cut(s)	182, 216
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	98, 109, 245
AgsI	TTSAA	1 cut(s)	509
AhdI	GACNNNNNGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	4 cut(s)	16, 392, 519, 531
AluI	AGCT	4 cut(s)	16, 392, 519, 531
Alw26I	GTCTC	3 cut(s)	360, 594, 660
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	5 cut(s)	39, 100, 322, 418, 521
ApeKI	GCWGC	2 cut(s)	13, 389
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	2 cut(s)	413, 549
AspLEI	GCGC	2 cut(s)	233, 353
AspS9I	GGNCC	4 cut(s)	290, 323, 419, 562
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	407, 584, 773
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	290, 562
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BalI	TGGCCA	2 cut(s)	41, 523
BbvI	GCAGC	2 cut(s)	25, 401
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	3 cut(s)	360, 594, 660
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	14, 390
BlsI	GCNGC	2 cut(s)	15, 391
Bme1390I	CCNGG	2 cut(s)	212, 663
Bme18I	GGWCC	2 cut(s)	290, 562
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	4 cut(s)	290, 323, 419, 562
BmrFI	CCNGG	2 cut(s)	212, 663
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	42, 108, 120
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 109, 245
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	536, 763
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	42, 108, 120
BseGI	GGATG	3 cut(s)	178, 490, 733
BseLI	CCNNNNNNNGG	3 cut(s)	98, 109, 245
BseNI	ACTGG	2 cut(s)	536, 763
BseXI	GCAGC	2 cut(s)	25, 401
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	5 cut(s)	41, 102, 324, 420, 523
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	211, 242, 363
BslI	CCNNNNNNNGG	3 cut(s)	98, 109, 245
BsmAI	GTCTC	3 cut(s)	360, 594, 660
BsmBI	CGTCTC	3 cut(s)	360, 594, 660
BsnI	GGCC	5 cut(s)	41, 102, 324, 420, 523
BsoBI	CYCGRG	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	4 cut(s)	154, 235, 281, 370
Bsp19I	CCATGG	2 cut(s)	42, 108
BspACI	CCGC	3 cut(s)	239, 338, 659
BspANI	GGCC	5 cut(s)	41, 102, 324, 420, 523
BspEI	TCCGGA	1 cut(s)	362
BspPI	GGATC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	536, 763
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	42, 108, 120
BssMI	GATC	4 cut(s)	154, 235, 281, 370
BssT1I	CCWWGG	2 cut(s)	42, 108
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	2 cut(s)	42, 108
BstF5I	GGATG	3 cut(s)	178, 490, 733
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	233, 353
BstKTI	GATC	4 cut(s)	157, 238, 284, 373
BstMAI	GTCTC	3 cut(s)	360, 594, 660
BstMBI	GATC	4 cut(s)	154, 235, 281, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	210, 661
BstV1I	GCAGC	2 cut(s)	25, 401
BsuRI	GGCC	5 cut(s)	41, 102, 324, 420, 523
BtgI	CCRYGG	2 cut(s)	42, 108
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	178, 490, 733
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	233, 353
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	4 cut(s)	290, 323, 419, 562
Csp6I	GTAC	2 cut(s)	181, 215
CviAII	CATG	9 cut(s)	37, 43, 67, 109, 192, 218, 317, 678, 773
CviQI	GTAC	2 cut(s)	181, 215
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	4 cut(s)	156, 237, 283, 372
DpnII	GATC	4 cut(s)	154, 235, 281, 370
DriI	GACNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	2 cut(s)	39, 521
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	42, 108
Eco47I	GGWCC	2 cut(s)	290, 562
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	42, 108
EcoT22I	ATGCAT	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	42, 108
Esp3I	CGTCTC	3 cut(s)	360, 594, 660
FaeI	CATG	9 cut(s)	40, 46, 70, 112, 195, 221, 320, 681, 776
FatI	CATG	9 cut(s)	36, 42, 66, 108, 191, 217, 316, 677, 772
FauI	CCCGC	1 cut(s)	666
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	14, 390
FokI	GGATG	3 cut(s)	185, 497, 740
Fsp4HI	GCNGC	2 cut(s)	14, 390
GlaI	GCGC	2 cut(s)	232, 352
GluI	GCNGC	2 cut(s)	14, 390
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	5 cut(s)	41, 102, 324, 420, 523
HapII	CCGG	3 cut(s)	211, 242, 363
HhaI	GCGC	2 cut(s)	233, 353
Hin1II	CATG	9 cut(s)	40, 46, 70, 112, 195, 221, 320, 681, 776
Hin6I	GCGC	2 cut(s)	231, 351
HinP1I	GCGC	2 cut(s)	231, 351
HpaII	CCGG	3 cut(s)	211, 242, 363
HphI	GGTGA	3 cut(s)	407, 584, 773
Hpy166II	GTNNAC	3 cut(s)	89, 290, 587
Hpy188I	TCNGA	5 cut(s)	281, 445, 544, 562, 599
Hpy188III	TCNNGA	2 cut(s)	119, 363
Hpy8I	GTNNAC	3 cut(s)	89, 290, 587
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	568, 669
HpyCH4V	TGCA	6 cut(s)	13, 389, 452, 641, 693, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	568, 669
Hsp92II	CATG	9 cut(s)	40, 46, 70, 112, 195, 221, 320, 681, 776
HspAI	GCGC	2 cut(s)	231, 351
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	4 cut(s)	154, 235, 281, 370
Lsp1109I	GCAGC	2 cut(s)	25, 401
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	2 cut(s)	568, 669
MaeIII	GTNAC	2 cut(s)	194, 572
MalI	GATC	4 cut(s)	156, 237, 283, 372
MboI	GATC	4 cut(s)	154, 235, 281, 370
MboII	GAAGA	2 cut(s)	418, 557
MlsI	TGGCCA	2 cut(s)	41, 523
MluCI	AATT	4 cut(s)	258, 383, 439, 704
MluNI	TGGCCA	2 cut(s)	41, 523
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	5 cut(s)	92, 115, 322, 475, 718
Mox20I	TGGCCA	2 cut(s)	41, 523
Mph1103I	ATGCAT	1 cut(s)	774
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	2 cut(s)	413, 549
MscI	TGGCCA	2 cut(s)	41, 523
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	2 cut(s)	41, 523
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	3 cut(s)	211, 242, 363
MspR9I	CCNGG	2 cut(s)	212, 663
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	1 cut(s)	212
NcoI	CCATGG	2 cut(s)	42, 108
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	4 cut(s)	154, 235, 281, 370
NlaIII	CATG	9 cut(s)	40, 46, 70, 112, 195, 221, 320, 681, 776
NmuCI	GTSAC	2 cut(s)	194, 572
NsiI	ATGCAT	1 cut(s)	774
NspI	RCATGY	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	413, 549
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	15, 391
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	661
PspPI	GGNCC	4 cut(s)	290, 323, 419, 562
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	182, 216
RsaNI	GTAC	2 cut(s)	181, 215
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	14, 390
Sau3AI	GATC	4 cut(s)	154, 235, 281, 370
Sau96I	GGNCC	4 cut(s)	290, 323, 419, 562
ScrFI	CCNGG	2 cut(s)	212, 663
SfaNI	GCATC	1 cut(s)	475
SgrAI	CRCCGGYG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	290, 562
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	258, 383, 439, 704
SsiI	CCGC	3 cut(s)	239, 338, 659
SspI	AATATT	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	210, 661
StyI	CCWWGG	2 cut(s)	42, 108
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	2 cut(s)	571, 672
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	258, 383, 439, 704
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	194, 572
TseI	GCWGC	2 cut(s)	13, 389
Tsp45I	GTSAC	2 cut(s)	194, 572
TspGWI	ACGGA	2 cut(s)	618, 769
TspRI	CASTG	1 cut(s)	543
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	290, 562
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	586
XmnI	GAANNNNTTC	2 cut(s)	413, 549
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.