Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1971574 .. 1974470

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG025600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCCAATAAGAATGGACAGAACTTTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACGCCAGATGAGCTGCTTGAAATACTCAAGGGCCAATGCTTTGTCAGACAAGAGGGTTGGTGGTCGTATGAATTTTGCTATCAGATGAAATTACGACAAATTCATGTGGAAGATGAGAAGGTGCTTCAGGAATTTGTTTTAGGTGTATATGATGCTGAGGCCACTGCTGCATTCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTATCATCCTCATCAATATACAAACGGAACCACTTGTGATCTTACAAACCAACCTCGAGAGACTGAGGTGAGATTTGTATGCTCTGAGCCGAGAGCTATGATTAGTTCAATTACCGAGATATCCACTTGCAAGTATGCAGTTACAATTCAATGCCCCACACTTTGCAAGCATCCATTATTCCAAGCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTTCTTCCCAAGGATTACAAGGAAACCAAAGTTGAGGATGAAGTATCTGAAATTAAGCAGATAGATATGGTCACAGACAATGAATCTCAGTCCAATGGCGATTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

233

Amino Acids

26.97

Weight (kDa)

5.11

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH_1	PF13015	17 - 183	1.9e-06	Glucosidase II beta subunit-like protein
PRKCSH	PF07915	55 - 135	2.2e-17	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	3 cut(s)	203, 231, 263
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	134
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	152, 307, 477, 518
AluBI	AGCT	3 cut(s)	56, 145, 464
AluI	AGCT	3 cut(s)	56, 145, 464
Alw26I	GTCTC	2 cut(s)	422, 553
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	163, 291
ApeKI	GCWGC	3 cut(s)	93, 145, 299
ApoI	RAATTY	3 cut(s)	203, 231, 263
AseI	ATTAAT	1 cut(s)	579
AsiGI	ACCGGT	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	105, 132, 286
BcoDI	GTCTC	2 cut(s)	422, 553
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	3 cut(s)	94, 146, 300
BlsI	GCNGC	3 cut(s)	95, 147, 301
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	3 cut(s)	274, 346, 547
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	4 cut(s)	373, 538, 631, 700
BseMII	CTCAG	5 cut(s)	102, 279, 423, 444, 689
BseXI	GCAGC	3 cut(s)	105, 132, 286
BshFI	GGCC	2 cut(s)	165, 293
BshTI	ACCGGT	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	422, 553
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	165, 293
Bso31I	GGTCTC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	340, 406
BspANI	GGCC	2 cut(s)	165, 293
BspCNI	CTCAG	5 cut(s)	103, 280, 424, 445, 688
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	2 cut(s)	340, 406
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	7 cut(s)	42, 57, 111, 288, 432, 453, 675
BstF5I	GGATG	4 cut(s)	373, 538, 631, 700
BstKTI	GATC	2 cut(s)	343, 409
BstMAI	GTCTC	2 cut(s)	422, 553
BstMBI	GATC	2 cut(s)	340, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 299
BstNSI	RCATGY	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	105, 132, 286
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	165, 293
BtsCI	GGATG	4 cut(s)	373, 538, 631, 700
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	536
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	142
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	3 cut(s)	37, 97, 236
CviJI	RGCY	7 cut(s)	56, 70, 145, 165, 293, 457, 464
CviKI_1	RGCY	7 cut(s)	56, 70, 145, 165, 293, 457, 464
DdeI	CTNAG	7 cut(s)	42, 57, 111, 288, 432, 453, 675
DpnI	GATC	2 cut(s)	342, 408
DpnII	GATC	2 cut(s)	340, 406
Eco130I	CCWWGG	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	553
Eco32I	GATATC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	242
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	3 cut(s)	40, 100, 239
FatI	CATG	3 cut(s)	36, 96, 235
Fnu4HI	GCNGC	3 cut(s)	94, 146, 300
FokI	GGATG	3 cut(s)	360, 525, 638
Fsp4HI	GCNGC	3 cut(s)	94, 146, 300
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	3 cut(s)	94, 146, 300
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	165, 293
HapII	CCGG	1 cut(s)	563
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	40, 100, 239
HinfI	GANTC	3 cut(s)	313, 671, 689
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	448
Hpy188I	TCNGA	6 cut(s)	179, 216, 322, 454, 637, 694
Hpy188III	TCNNGA	2 cut(s)	260, 425
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	5 cut(s)	302, 359, 498, 506, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 299
HpyF3I	CTNAG	7 cut(s)	42, 57, 111, 288, 432, 453, 675
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	40, 100, 239
Kzo9I	GATC	2 cut(s)	340, 406
LpnPI	CCDG	5 cut(s)	92, 150, 245, 323, 576
Lsp1109I	GCAGC	3 cut(s)	105, 132, 286
LweI	GCATC	3 cut(s)	274, 346, 547
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	32, 508, 658
MalI	GATC	2 cut(s)	342, 408
MboI	GATC	2 cut(s)	340, 406
MboII	GAAGA	3 cut(s)	142, 254, 584
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	9 cut(s)	72, 203, 221, 231, 263, 477, 513, 580, 639
MnlI	CCTC	7 cut(s)	43, 178, 283, 387, 427, 432, 616
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	4 cut(s)	123, 336, 579, 642
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	142, 299
NdeII	GATC	2 cut(s)	340, 406
NlaIII	CATG	3 cut(s)	40, 100, 239
NlaIV	GGNNCC	1 cut(s)	397
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	658
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	423
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	313, 671, 689
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	95, 147, 301
PshBI	ATTAAT	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	123, 336, 579, 642
SatI	GCNGC	3 cut(s)	94, 146, 300
Sau3AI	GATC	2 cut(s)	340, 406
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	9 cut(s)	48, 58, 147, 255, 277, 371, 424, 438, 466
SfaNI	GCATC	3 cut(s)	274, 346, 547
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	158, 423
SmoI	CTYRAG	2 cut(s)	158, 423
Sse9I	AATT	9 cut(s)	72, 203, 221, 231, 263, 477, 513, 580, 639
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	597
TaqI	TCGA	1 cut(s)	424
TasI	AATT	9 cut(s)	72, 203, 221, 231, 263, 477, 513, 580, 639
TfiI	GAWTC	3 cut(s)	313, 671, 689
Tru1I	TTAA	4 cut(s)	123, 336, 579, 642
Tru9I	TTAA	4 cut(s)	123, 336, 579, 642
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	3 cut(s)	93, 145, 299
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	6 cut(s)	143, 216, 224, 233, 642, 684
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	3 cut(s)	203, 231, 263
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	423
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.