Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

75521406 .. 75523341

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCAAAAGTTCCACCAGCTCTTCTAGAACAATTGAACCACGGGACTAATGTGGATCTCTGTGATGTCAAGATTTGGAATCTATCAAATCAACCAGTTTACATAATACGTCAATTTGATCTGAATTGGATCTTCTGCTGTAAATTCAGGATCTTTAAATACCTGTTTCGGATTTGGAAAGTGCTTGAGAATGCAAGACTGGAACTGTGTATGGTTTCTTATGACTATATTCTGGGTGACTGGTTTGAGAAAGAAGCTATCTTCACCGTTGTGACTGCAGGTGAGATTCTCAGAGCCGAGAGTATGATTAGTTCAATTACAGAGATATCCACCTACAAGTATGCAGTTGCTATTAAATGCCCACTTTGCAAGCATCAATTATTCCAAGCAGAGAGACCGGTATGGGAGACAATTAATTGTAATGTGCTTCCCAAGGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTGAAATTAAGCAGATAGTTATGGTCACAGACAGTGAATCTCATTCCAATGATGAATTGGACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

179

Amino Acids

20.9

Weight (kDa)

4.83

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AclWI	GGATC	3 cut(s)	63, 137, 158
AcsI	RAATTY	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	37, 315
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	2 cut(s)	20, 257
AluI	AGCT	2 cut(s)	20, 257
Alw26I	GTCTC	2 cut(s)	388, 401
AlwI	GGATC	3 cut(s)	63, 137, 158
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	414
AsiGI	ACCGGT	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	248, 256, 293
BcoDI	GTCTC	2 cut(s)	388, 401
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	40, 432
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	3 cut(s)	95, 204, 245
BseDI	CCNNGG	2 cut(s)	40, 432
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	3 cut(s)	95, 204, 245
BshTI	ACCGGT	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	388, 401
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	55, 118, 129, 150
BspCNI	CTCAG	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	3 cut(s)	63, 137, 158
BspQI	GCTCTTC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	95, 204, 245
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	40, 432
BssMI	GATC	4 cut(s)	55, 118, 129, 150
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	207, 268, 503
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	58, 121, 132, 153
BstMAI	GTCTC	2 cut(s)	388, 401
BstMBI	GATC	4 cut(s)	55, 118, 129, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	55, 129, 150
BstYI	RGATCY	3 cut(s)	55, 129, 150
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	397
CviJI	RGCY	3 cut(s)	20, 257, 296
CviKI_1	RGCY	3 cut(s)	20, 257, 296
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	4 cut(s)	57, 120, 131, 152
DpnII	GATC	4 cut(s)	55, 118, 129, 150
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaiI	YATR	8 cut(s)	104, 212, 222, 228, 305, 342, 403, 491
FaqI	GGGAC	1 cut(s)	58
FokI	GGATG	1 cut(s)	473
FspBI	CTAG	1 cut(s)	26
HapII	CCGG	1 cut(s)	398
HinfI	GANTC	4 cut(s)	79, 286, 467, 506
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	3 cut(s)	248, 256, 293
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	123, 171, 293, 472
Hpy188III	TCNNGA	3 cut(s)	26, 70, 148
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	207, 268, 503
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	194, 278, 344, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	55, 118, 129, 150
LguI	GCTCTTC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	30, 108, 133, 176, 185, 218, 226, 264, 411
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	236, 271, 493
MalI	GATC	4 cut(s)	57, 120, 131, 152
MboI	GATC	4 cut(s)	55, 118, 129, 150
MboII	GAAGA	4 cut(s)	14, 124, 253, 476
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	3 cut(s)	55, 129, 150
MnlI	CCTC	1 cut(s)	451
MseI	TTAA	4 cut(s)	156, 354, 414, 477
MslI	CAYNNNNRTG	2 cut(s)	269, 516
MspI	CCGG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	4 cut(s)	55, 118, 129, 150
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	236, 271, 493
OliI	CACNNNNGTG	1 cut(s)	269
PaqCI	CACCTGC	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	4 cut(s)	79, 286, 467, 506
PinAI	ACCGGT	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	414
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	3 cut(s)	55, 129, 150
RseI	CAYNNNNRTG	2 cut(s)	269, 516
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	156, 354, 414, 477
Sau3AI	GATC	4 cut(s)	55, 118, 129, 150
SetI	ASST	6 cut(s)	22, 112, 165, 259, 283, 335
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	269, 516
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	207, 268, 503
TaiI	ACGT	1 cut(s)	112
TfiI	GAWTC	4 cut(s)	79, 286, 467, 506
Tru1I	TTAA	4 cut(s)	156, 354, 414, 477
Tru9I	TTAA	4 cut(s)	156, 354, 414, 477
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	3 cut(s)	236, 271, 493
Tsp45I	GTSAC	3 cut(s)	236, 271, 493
TspDTI	ATGAA	2 cut(s)	477, 537
TspRI	CASTG	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.