Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1820562 .. 1837763

Gene Structure 17202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCTGCAGCAGTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCAATGCCTTTTTGGAAATGGCGAGGAGAAGCATTTGAGTACTATGCCAAAAAGCGACAAGCAGCTCAAGAGCTCTGGTATCATGAGTGTAATACTTTGACCACATTTTGCTGCAGTATTGGTCTTCTCTTTTTTGAAAATTGGTTTCTCTACGCAGGCGGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACGGGATGGTCTGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCACAAGGTGAGATTTGTATGCTCAGAGCTGAGAGCTATGATTAGTTCAATTACAGAGATATCCACCTGCAAGTATGCAGTTGCAATTAAATGCCCCACACTTTGCAAGCATCCATTATTCCAGTCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTACTTCCCAAGGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTAAAATTAAGCAGATAGTTATGGTCATAGACAGTGAATCTCATTCCAATGATGAATCTGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

221

Amino Acids

25.08

Weight (kDa)

7.06

Isoelectric Point (pI)

66.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AciI	CCGC	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	83, 555
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgeI	ACCGGT	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	179, 441
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	5 cut(s)	18, 107, 115, 421, 428
AluI	AGCT	5 cut(s)	18, 107, 115, 421, 428
Alw21I	GWGCWC	2 cut(s)	117, 254
Alw26I	GTCTC	3 cut(s)	312, 344, 517
ApeKI	GCWGC	5 cut(s)	4, 7, 15, 104, 153
AseI	ATTAAT	1 cut(s)	543
AsiGI	ACCGGT	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	4 cut(s)	223, 228, 233, 412
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	117, 254
BbvI	GCAGC	4 cut(s)	19, 27, 116, 140
BccI	CCATC	2 cut(s)	266, 319
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	312, 344, 517
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	5, 154
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	6 cut(s)	5, 8, 16, 105, 154, 202
BlsI	GCNGC	6 cut(s)	6, 9, 17, 106, 155, 203
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	372, 561
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	2 cut(s)	387, 514
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	372, 561
BseGI	GGATG	4 cut(s)	277, 311, 502, 595
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	4 cut(s)	357, 413, 429, 648
BseNI	ACTGG	2 cut(s)	387, 514
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	19, 27, 116, 140
BsgI	GTGCAG	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	117, 254
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	3 cut(s)	312, 344, 517
BsmFI	GGGAC	1 cut(s)	355
Bso31I	GGTCTC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	117, 254
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	4 cut(s)	358, 414, 428, 649
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	2 cut(s)	9, 158
BspMI	ACCTGC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	387, 514
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	372, 561
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	199, 500
BstDEI	CTNAG	4 cut(s)	366, 415, 422, 657
BstF5I	GGATG	4 cut(s)	277, 311, 502, 595
BstMAI	GTCTC	3 cut(s)	312, 344, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 35
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	5, 154
BstV1I	GCAGC	4 cut(s)	19, 27, 116, 140
BstV2I	GAAGAC	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	277, 311, 502, 595
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 637
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	199, 500
CciI	TCATGA	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	82, 554
CspAI	ACCGGT	1 cut(s)	526
CviAII	CATG	2 cut(s)	26, 125
CviJI	RGCY	5 cut(s)	18, 107, 115, 421, 428
CviKI_1	RGCY	5 cut(s)	18, 107, 115, 421, 428
CviQI	GTAC	2 cut(s)	82, 554
DdeI	CTNAG	4 cut(s)	366, 415, 422, 657
DraIII	CACNNNGTG	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	29, 128
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	2 cut(s)	25, 124
Fnu4HI	GCNGC	6 cut(s)	5, 8, 16, 105, 154, 202
FokI	GGATG	4 cut(s)	284, 298, 489, 602
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	5, 8, 16, 105, 154, 202
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	6 cut(s)	5, 8, 16, 105, 154, 202
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	2 cut(s)	29, 128
HinfI	GANTC	5 cut(s)	281, 368, 596, 635, 653
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	4 cut(s)	223, 228, 233, 412
Hpy188I	TCNGA	3 cut(s)	418, 520, 658
Hpy188III	TCNNGA	3 cut(s)	110, 125, 278
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4V	TGCA	8 cut(s)	7, 15, 29, 156, 462, 470, 476, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 35
HpyF3I	CTNAG	4 cut(s)	366, 415, 422, 657
Hsp92II	CATG	2 cut(s)	29, 128
Lsp1109I	GCAGC	4 cut(s)	19, 27, 116, 140
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	1 cut(s)	336
MboII	GAAGA	3 cut(s)	158, 317, 605
MhlI	GDGCHC	2 cut(s)	117, 254
MluCI	AATT	6 cut(s)	181, 255, 441, 477, 544, 603
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	5 cut(s)	59, 239, 244, 249, 580
MseI	TTAA	3 cut(s)	480, 543, 606
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	21, 35
NlaIII	CATG	2 cut(s)	29, 128
NlaIV	GGNNCC	1 cut(s)	219
PagI	TCATGA	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	281, 596, 635, 653
PinAI	ACCGGT	1 cut(s)	526
PkrI	GCNGC	6 cut(s)	6, 9, 17, 106, 155, 203
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	2 cut(s)	9, 158
RsaI	GTAC	2 cut(s)	83, 555
RsaNI	GTAC	2 cut(s)	82, 554
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	480, 543, 606
SatI	GCNGC	6 cut(s)	5, 8, 16, 105, 154, 202
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	117, 254
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	2 cut(s)	5, 154
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	6 cut(s)	181, 255, 441, 477, 544, 603
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	632
TasI	AATT	6 cut(s)	181, 255, 441, 477, 544, 603
TatI	WGTACW	2 cut(s)	81, 553
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	4 cut(s)	281, 596, 635, 653
Tru1I	TTAA	3 cut(s)	480, 543, 606
Tru9I	TTAA	3 cut(s)	480, 543, 606
TscAI	CASTG	2 cut(s)	17, 637
TseI	GCWGC	5 cut(s)	4, 7, 15, 104, 153
TspDTI	ATGAA	2 cut(s)	606, 666
TspRI	CASTG	2 cut(s)	17, 637
VpaK11BI	GGWCC	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	543
XspI	CTAG	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.