Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527388 .. 1530133

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG025500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGGTAGTACTGGTTTTCACTCTACTCGCGCTCGTTCTCTTCCACCTGGTCTCGGCCGAGATCAACCCAGCTCACCTAGGTGGTACTTTTAGTCGCAGTTCTCGTGAGCCAAAGTACAAGATTGAATTCCATTCTGAAGAGTCACCTTTTCCTCCTGAAGATGATCAGGAGTCTGTGGTTATGCCCAATAAGAATGGACAGAACTTTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACGCCAGATGAGCTGCTTGAAATACTCAAGGACCAATGCTTTATCAGAGAAGAGGGTTGGTGGTCGTATGAATTTTGCTATCAGAATCAATTACGACAAATTCATGTGGAAGATGGGAAGATGCTTCAGGAATTTGTTTTAGGTGTATATGATGCTGAGGCCACTGCGGCATTCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTATCATCCTCATCAATATACAAACGGAACCACTTGTGATCTTACAAACCAACCTCGAGAGACTGAGGTGAGATTTGTATGCTCTGAGCGAGCTATGATTAGTTCAATTACCGAGATATCCACTTGCAAGTATGCAGTTACAATTCAATGCCCCACACTTTGCAAGCATCCATTATTCCAAGCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTTCTTCCCAAGGATTACAAGGAAACCAAAGTTGAGGATGAAGTATCTGAAATTAAGCAGATAGATATGGTCACGGACAATGAATCTCAGTCCAATGGCGATTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

293

Amino Acids

33.74

Weight (kDa)

4.99

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH_1	PF13015	78 - 243	4.1e-06	Glucosidase II beta subunit-like protein
PRKCSH	PF07915	116 - 196	2.4e-16	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	128, 386, 414, 446
AcuI	CTGAAG	3 cut(s)	159, 180, 425
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	3 cut(s)	12, 88, 119
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgeI	ACCGGT	1 cut(s)	742
AgsI	TTSAA	5 cut(s)	128, 335, 490, 657, 698
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	74, 239, 328, 644
AluI	AGCT	4 cut(s)	74, 239, 328, 644
Alw26I	GTCTC	3 cut(s)	58, 605, 733
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	2 cut(s)	57, 474
ApeKI	GCWGC	2 cut(s)	276, 328
ApoI	RAATTY	4 cut(s)	128, 386, 414, 446
AseI	ATTAAT	1 cut(s)	759
AsiGI	ACCGGT	1 cut(s)	742
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	3 cut(s)	68, 138, 631
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	346
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	225
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	288, 315
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	58, 605, 733
BfaI	CTAG	2 cut(s)	80, 273
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	3 cut(s)	277, 329, 483
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	3 cut(s)	278, 330, 484
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	4 cut(s)	426, 457, 529, 727
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	2 cut(s)	58, 733
BsaJI	CCNNGG	2 cut(s)	79, 777
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	742
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	79, 777
BseGI	GGATG	4 cut(s)	556, 718, 811, 880
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	5 cut(s)	285, 462, 606, 627, 869
BseNI	ACTGG	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	288, 315
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 476
BshTI	ACCGGT	1 cut(s)	742
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	3 cut(s)	58, 605, 733
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	59, 476
Bso31I	GGTCTC	2 cut(s)	58, 733
BsoBI	CYCGRG	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	63, 166, 523, 589
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	59, 476
BspCNI	CTCAG	5 cut(s)	286, 463, 607, 628, 868
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	518
BspTNI	GGTCTC	2 cut(s)	58, 733
BsrFI	RCCGGY	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	2 cut(s)	79, 777
BssMI	GATC	4 cut(s)	63, 166, 523, 589
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	79, 777
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	3 cut(s)	47, 135, 360
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	642, 716
BstDEI	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 636, 855
BstF5I	GGATG	4 cut(s)	556, 718, 811, 880
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	4 cut(s)	66, 169, 526, 592
BstMAI	GTCTC	3 cut(s)	58, 605, 733
BstMBI	GATC	4 cut(s)	63, 166, 523, 589
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 482
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	288, 315
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	59, 476
BtsCI	GGATG	4 cut(s)	556, 718, 811, 880
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	642, 716
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	11, 87, 118
CspAI	ACCGGT	1 cut(s)	742
CviAII	CATG	3 cut(s)	220, 280, 419
CviJI	RGCY	8 cut(s)	59, 74, 112, 239, 253, 328, 476, 644
CviKI_1	RGCY	8 cut(s)	59, 74, 112, 239, 253, 328, 476, 644
CviQI	GTAC	3 cut(s)	11, 87, 118
DdeI	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 636, 855
DpnI	GATC	4 cut(s)	65, 168, 525, 591
DpnII	GATC	4 cut(s)	63, 166, 523, 589
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	47, 135, 360
EarI	CTCTTC	3 cut(s)	47, 135, 360
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	79, 777
Eco31I	GGTCTC	2 cut(s)	58, 733
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	159, 180, 425
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	2 cut(s)	79, 777
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	2 cut(s)	79, 777
FaeI	CATG	3 cut(s)	223, 283, 422
FatI	CATG	3 cut(s)	219, 279, 418
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	277, 329, 483
FokI	GGATG	3 cut(s)	543, 705, 818
Fsp4HI	GCNGC	3 cut(s)	277, 329, 483
FspBI	CTAG	2 cut(s)	80, 273
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	277, 329, 483
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	59, 476
HapII	CCGG	1 cut(s)	743
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	223, 283, 422
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	6 cut(s)	143, 173, 400, 496, 851, 869
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	3 cut(s)	68, 138, 631
Hpy188I	TCNGA	7 cut(s)	139, 362, 399, 505, 637, 817, 874
Hpy188III	TCNNGA	5 cut(s)	107, 158, 170, 443, 608
HpyCH4V	TGCA	4 cut(s)	542, 678, 686, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 482
HpyF3I	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 636, 855
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	223, 283, 422
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	63, 166, 523, 589
Lsp1109I	GCAGC	2 cut(s)	288, 315
LweI	GCATC	4 cut(s)	426, 457, 529, 727
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	2 cut(s)	80, 273
MaeIII	GTNAC	4 cut(s)	144, 215, 688, 838
MalI	GATC	4 cut(s)	65, 168, 525, 591
MboI	GATC	4 cut(s)	63, 166, 523, 589
MboII	GAAGA	8 cut(s)	34, 152, 173, 325, 377, 437, 445, 764
MflI	RGATCY	1 cut(s)	523
MlyI	GAGTC	2 cut(s)	152, 182
MnlI	CCTC	8 cut(s)	165, 226, 361, 466, 570, 610, 615, 796
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	4 cut(s)	306, 519, 759, 822
MslI	CAYNNNNRTG	2 cut(s)	81, 284
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	325, 482
NdeII	GATC	4 cut(s)	63, 166, 523, 589
NlaIII	CATG	3 cut(s)	223, 283, 422
NlaIV	GGNNCC	1 cut(s)	580
NmeAIII	GCCGAG	2 cut(s)	35, 85
NmuCI	GTSAC	2 cut(s)	144, 838
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	4 cut(s)	400, 496, 851, 869
PinAI	ACCGGT	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	278, 330, 484
PleI	GAGTC	2 cut(s)	151, 181
PpsI	GAGTC	2 cut(s)	151, 181
PshBI	ATTAAT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	12, 88, 119
RsaNI	GTAC	3 cut(s)	11, 87, 118
RseI	CAYNNNNRTG	2 cut(s)	81, 284
SaqAI	TTAA	4 cut(s)	306, 519, 759, 822
SatI	GCNGC	3 cut(s)	277, 329, 483
Sau3AI	GATC	4 cut(s)	63, 166, 523, 589
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	152, 182
ScrFI	CCNGG	1 cut(s)	50
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	4 cut(s)	426, 457, 529, 727
Sfr274I	CTCGAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	2 cut(s)	81, 284
SmlI	CTYRAG	2 cut(s)	341, 606
SmoI	CTYRAG	2 cut(s)	341, 606
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	2 cut(s)	80, 273
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	79, 777
TaqI	TCGA	1 cut(s)	607
TatI	WGTACW	2 cut(s)	10, 117
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	4 cut(s)	400, 496, 851, 869
Tru1I	TTAA	4 cut(s)	306, 519, 759, 822
Tru9I	TTAA	4 cut(s)	306, 519, 759, 822
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	144, 838
TseI	GCWGC	2 cut(s)	276, 328
Tsp45I	GTSAC	2 cut(s)	144, 838
TspDTI	ATGAA	6 cut(s)	17, 326, 399, 407, 822, 864
TspGWI	ACGGA	2 cut(s)	591, 857
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	4 cut(s)	128, 386, 414, 446
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	606
XmaJI	CCTAGG	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 273
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.