Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000902.1

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

35923 .. 36517

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000902.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgatcaggtctgtggttatgcttaataagaatggacagaactctatatgttacatgcctaaggtggaggaagcaaagagtgggaagccaattctccagcagaatactagcagcatgattgtggaaactgagaaacgagttaagaagaaaacgccagatgagctgcttgaaatactcaaggaccaatgctttatcagacaagagggttggtggtcatatgaattttgctatcagaagagattacgacaaattcatttggaagatgagaaggtatccacttatgcgcctctgaaatgcacattttcaactatactatcttctgttattagttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

111

Amino Acids

12.95

Weight (kDa)

8.91

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	221, 249
AgsI	TTSAA	2 cut(s)	170, 306
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	111, 163
ApoI	RAATTY	2 cut(s)	221, 249
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	123, 150
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	112, 164
BlsI	GCNGC	2 cut(s)	113, 165
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	123, 150
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	121
BssMI	GATC	1 cut(s)	3
Bst6I	CTCTTC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	60, 129
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	123, 150
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	2 cut(s)	55, 115
CviJI	RGCY	2 cut(s)	88, 163
CviKI_1	RGCY	2 cut(s)	88, 163
DdeI	CTNAG	2 cut(s)	60, 129
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	58, 118
FaiI	YATR	9 cut(s)	20, 47, 49, 56, 116, 217, 219, 282, 311
FatI	CATG	2 cut(s)	54, 114
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	112, 164
Fsp4HI	GCNGC	2 cut(s)	112, 164
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	112, 164
GsuI	CTGGAG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	58, 118
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	197, 234, 291
HpyAV	CCTTC	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	60, 129
Hsp92II	CATG	2 cut(s)	58, 118
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	110, 168
Lsp1109I	GCAGC	2 cut(s)	123, 150
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	157, 247, 272, 309
MluCI	AATT	3 cut(s)	90, 221, 249
MnlI	CCTC	3 cut(s)	61, 196, 297
MseI	TTAA	2 cut(s)	24, 141
MslI	CAYNNNNRTG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	58, 118
NspI	RCATGY	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	113, 165
PspPI	GGNCC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	24, 141
SatI	GCNGC	2 cut(s)	112, 164
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	181
SetI	ASST	4 cut(s)	11, 66, 165, 273
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	90, 221, 249
SspMI	CTAG	1 cut(s)	108
TasI	AATT	3 cut(s)	90, 221, 249
Tru1I	TTAA	2 cut(s)	24, 141
Tru9I	TTAA	2 cut(s)	24, 141
TseI	GCWGC	2 cut(s)	111, 163
TspDTI	ATGAA	2 cut(s)	234, 242
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	221, 249
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.