Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Forward (+)

8998324 .. 8999347

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTTAATAAGAATGGACAGAACTCTATATGTTACATGCCTAAGGTGGAGGAAGCAAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGAAGAAAACGCCAGATGAGCTGCTTGAAATACTCAAGGACCAATGCTTTATCAGACAAGAGGGTTGGTGGTCATATGAATTTTGCTATCAGAAGAGATTACGACAAATTCATTTGGAAGATGAGAAGATTATTCCAAGCGGAGAAAGTATGGCAGACCATTGTAATGTTCTTCCCAAGGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTGAAATTAAGCAGATAGTTATGGTCACAGACGGTGAATCTCATTCCAATGATGATTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

134

Amino Acids

15.66

Weight (kDa)

4.83

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	55 - 84	6.8e-09	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	203, 231
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	93, 145
ApoI	RAATTY	2 cut(s)	203, 231
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	105, 132
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	94, 146
BlsI	GCNGC	2 cut(s)	95, 147
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse21I	CCTNAGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	334, 403
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	105, 132
BslI	CCNNNNNNNGG	1 cut(s)	325
BspACI	CCGC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	42, 111
BstF5I	GGATG	2 cut(s)	334, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	105, 132
Bsu36I	CCTNAGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	334, 403
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	2 cut(s)	37, 97
CviJI	RGCY	2 cut(s)	70, 145
CviKI_1	RGCY	2 cut(s)	70, 145
DdeI	CTNAG	2 cut(s)	42, 111
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	8 cut(s)	29, 31, 38, 98, 199, 201, 275, 359
FatI	CATG	2 cut(s)	36, 96
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	94, 146
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	94, 146
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	2 cut(s)	94, 146
GsuI	CTGGAG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	40, 100
HinfI	GANTC	3 cut(s)	335, 374, 392
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	179, 216, 340, 397
HpyCH4III	ACNGT	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	42, 111
Hsp92II	CATG	2 cut(s)	40, 100
LpnPI	CCDG	2 cut(s)	92, 150
Lsp1109I	GCAGC	2 cut(s)	105, 132
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	32, 361
MboII	GAAGA	6 cut(s)	139, 229, 254, 262, 287, 344
MluCI	AATT	4 cut(s)	72, 203, 231, 342
MnlI	CCTC	3 cut(s)	43, 178, 319
MseI	TTAA	3 cut(s)	6, 123, 345
MslI	CAYNNNNRTG	3 cut(s)	101, 288, 384
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeI	CATATG	1 cut(s)	199
NlaIII	CATG	2 cut(s)	40, 100
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	335, 374, 392
PkrI	GCNGC	2 cut(s)	95, 147
PspPI	GGNCC	1 cut(s)	163
RseI	CAYNNNNRTG	3 cut(s)	101, 288, 384
SaqAI	TTAA	3 cut(s)	6, 123, 345
SatI	GCNGC	2 cut(s)	94, 146
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	2 cut(s)	48, 147
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	3 cut(s)	101, 288, 384
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	72, 203, 231, 342
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	371
TasI	AATT	4 cut(s)	72, 203, 231, 342
TfiI	GAWTC	3 cut(s)	335, 374, 392
Tru1I	TTAA	3 cut(s)	6, 123, 345
Tru9I	TTAA	3 cut(s)	6, 123, 345
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	93, 145
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	216, 224, 345
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	203, 231
XceI	RCATGY	1 cut(s)	40
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.