Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1675527 .. 1678385

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAGGTAGTACTGGTTTTCACTCTACTCGCGCTCGTTCTCTTCCACCTGGTCTCGGCCGAGATCAACCCAGCTCACCTAGCAGGTGGTACTTTTAGTCGCAGTTCTCGTGAGCCAAAGTACAAGATTGAATTCCATTCTGAAGAGTCACCTTTTCCTCCTGAAGATGATCAGGAGTCTGTGGTTATGCCCAATAAGAATGGACAGAACTTTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACGCCAGATGAGCTGCTTGAAATACTCAAGGGCCAATGCTTTATCAGAGAAGAGGGTTGGTGGTCGTATGAATTTTGCTATCAGAATCAATTACGACAAATTCATGTGGAAGATGGGAAGATGCTTCAGGAATTTGTTTTAGGTGTATATGATGCTGAGGCCACTGCGGCATTCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTATCATCCTCATCAATATACAAACGGAACCACTTGTGATCTTACAAACCAACCTCGAGAGACTGAGGTGAGATTTGTATGCTCTGAGCGAGCTATGATTAGTTCGATTACCGAGATATCCACTTGCAAGTATGCAGTTACAATTCAATGCCCCACACTTTGCAAGCATCCATTATTCCAAGCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTTCTTCCCAAGGATTACAAGGAAACCAAAGTTGAGGATGAAGTATCTGAAATTAAGCAGATAGATATGGTCACAGACAATGAATCTCAGTCCAATGGCGATTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

294

Amino Acids

33.75

Weight (kDa)

5.05

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH_1	PF13015	79 - 244	4.4e-07	Glucosidase II beta subunit-like protein
PRKCSH	PF07915	117 - 197	1.7e-16	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	131, 389, 417, 449
AcuI	CTGAAG	3 cut(s)	162, 183, 428
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	3 cut(s)	12, 91, 122
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgeI	ACCGGT	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	131, 338, 493, 701
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	74, 242, 331, 647
AluI	AGCT	4 cut(s)	74, 242, 331, 647
Alw26I	GTCTC	3 cut(s)	58, 608, 736
AlwI	GGATC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	3 cut(s)	57, 349, 477
ApeKI	GCWGC	2 cut(s)	279, 331
ApoI	RAATTY	4 cut(s)	131, 389, 417, 449
AseI	ATTAAT	1 cut(s)	762
AsiGI	ACCGGT	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	68, 141, 634
AvaI	CYCGRG	1 cut(s)	609
AxyI	CCTNAGG	1 cut(s)	228
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	291, 318
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	58, 608, 736
BfaI	CTAG	2 cut(s)	80, 276
BfuAI	ACCTGC	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	3 cut(s)	280, 332, 486
BlsI	GCNGC	3 cut(s)	281, 333, 487
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	4 cut(s)	429, 460, 532, 730
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	320
BsaI	GGTCTC	2 cut(s)	58, 736
BsaJI	CCNNGG	1 cut(s)	780
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	4 cut(s)	559, 721, 814, 883
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	5 cut(s)	288, 465, 609, 630, 872
BseNI	ACTGG	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	291, 318
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	59, 351, 479
BshTI	ACCGGT	1 cut(s)	745
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	3 cut(s)	58, 608, 736
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	59, 351, 479
Bso31I	GGTCTC	2 cut(s)	58, 736
BsoBI	CYCGRG	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	63, 169, 526, 592
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	3 cut(s)	59, 351, 479
BspCNI	CTCAG	5 cut(s)	289, 466, 610, 631, 871
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	521
BspTNI	GGTCTC	2 cut(s)	58, 736
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	4 cut(s)	63, 169, 526, 592
BssNI	GRCGYC	1 cut(s)	320
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	3 cut(s)	47, 138, 363
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	645, 719
BstDEI	CTNAG	7 cut(s)	228, 243, 297, 474, 618, 639, 858
BstF5I	GGATG	4 cut(s)	559, 721, 814, 883
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	4 cut(s)	66, 172, 529, 595
BstMAI	GTCTC	3 cut(s)	58, 608, 736
BstMBI	GATC	4 cut(s)	63, 169, 526, 592
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 328, 485
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	291, 318
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	59, 351, 479
BtsCI	GGATG	4 cut(s)	559, 721, 814, 883
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	645, 719
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	11, 90, 121
CspAI	ACCGGT	1 cut(s)	745
CviAII	CATG	3 cut(s)	223, 283, 422
CviJI	RGCY	9 cut(s)	59, 74, 115, 242, 256, 331, 351, 479, 647
CviKI_1	RGCY	9 cut(s)	59, 74, 115, 242, 256, 331, 351, 479, 647
CviQI	GTAC	3 cut(s)	11, 90, 121
DdeI	CTNAG	7 cut(s)	228, 243, 297, 474, 618, 639, 858
DpnI	GATC	4 cut(s)	65, 171, 528, 594
DpnII	GATC	4 cut(s)	63, 169, 526, 592
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	47, 138, 363
EarI	CTCTTC	3 cut(s)	47, 138, 363
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	780
Eco31I	GGTCTC	2 cut(s)	58, 736
Eco32I	GATATC	1 cut(s)	672
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	162, 183, 428
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	3 cut(s)	226, 286, 425
FatI	CATG	3 cut(s)	222, 282, 421
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	280, 332, 486
FokI	GGATG	3 cut(s)	546, 708, 821
Fsp4HI	GCNGC	3 cut(s)	280, 332, 486
FspBI	CTAG	2 cut(s)	80, 276
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	280, 332, 486
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	59, 351, 479
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	226, 286, 425
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	6 cut(s)	146, 176, 403, 499, 854, 872
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	68, 141, 634
Hpy188I	TCNGA	7 cut(s)	142, 365, 402, 508, 640, 820, 877
Hpy188III	TCNNGA	5 cut(s)	110, 161, 173, 446, 611
HpyCH4V	TGCA	4 cut(s)	545, 681, 689, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 328, 485
HpyF3I	CTNAG	7 cut(s)	228, 243, 297, 474, 618, 639, 858
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	226, 286, 425
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	63, 169, 526, 592
Lsp1109I	GCAGC	2 cut(s)	291, 318
LweI	GCATC	4 cut(s)	429, 460, 532, 730
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	2 cut(s)	80, 276
MaeIII	GTNAC	4 cut(s)	147, 218, 691, 841
MalI	GATC	4 cut(s)	65, 171, 528, 594
MboI	GATC	4 cut(s)	63, 169, 526, 592
MboII	GAAGA	8 cut(s)	34, 155, 176, 328, 380, 440, 448, 767
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	9 cut(s)	131, 258, 389, 407, 417, 449, 696, 763, 822
MlyI	GAGTC	2 cut(s)	155, 185
MnlI	CCTC	8 cut(s)	168, 229, 364, 469, 573, 613, 618, 799
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	4 cut(s)	309, 522, 762, 825
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	80, 328, 485
NdeII	GATC	4 cut(s)	63, 169, 526, 592
NlaIII	CATG	3 cut(s)	226, 286, 425
NlaIV	GGNNCC	1 cut(s)	583
NmeAIII	GCCGAG	2 cut(s)	35, 85
NmuCI	GTSAC	2 cut(s)	147, 841
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	403, 499, 854, 872
PinAI	ACCGGT	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	281, 333, 487
PleI	GAGTC	2 cut(s)	154, 184
PpsI	GAGTC	2 cut(s)	154, 184
PshBI	ATTAAT	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	3 cut(s)	12, 91, 122
RsaNI	GTAC	3 cut(s)	11, 90, 121
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	309, 522, 762, 825
SatI	GCNGC	3 cut(s)	280, 332, 486
Sau3AI	GATC	4 cut(s)	63, 169, 526, 592
Sau96I	GGNCC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	155, 185
ScrFI	CCNGG	1 cut(s)	50
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	4 cut(s)	429, 460, 532, 730
Sfr274I	CTCGAG	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	344, 609
SmoI	CTYRAG	2 cut(s)	344, 609
Sse9I	AATT	9 cut(s)	131, 258, 389, 407, 417, 449, 696, 763, 822
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	80, 276
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	780
TaqI	TCGA	2 cut(s)	610, 659
TasI	AATT	9 cut(s)	131, 258, 389, 407, 417, 449, 696, 763, 822
TatI	WGTACW	2 cut(s)	10, 120
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	4 cut(s)	403, 499, 854, 872
Tru1I	TTAA	4 cut(s)	309, 522, 762, 825
Tru9I	TTAA	4 cut(s)	309, 522, 762, 825
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	147, 841
TseI	GCWGC	2 cut(s)	279, 331
Tsp45I	GTSAC	2 cut(s)	147, 841
TspDTI	ATGAA	6 cut(s)	17, 329, 402, 410, 825, 867
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	4 cut(s)	131, 389, 417, 449
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	609
XspI	CTAG	2 cut(s)	80, 276
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.