Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

31299250 .. 31304067

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG320700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCCTAAGGTGGAGGAAGCAAAGAGTGGGAAGCCAGTTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAAACGCCAGATGAGCTGCTTGAAATACTCAAGGACCAATGCTTTATCAGACAAGAGGGTTGGTGGTCATATGAATTTTGCTATCAGAAGAGATTACGACAAATTCATTTGGAAGATGAGAAGAGAGCAACCTCTGTAAGTAAAGACCCTCAAATAAACTCAGACTCAAAGCCGTTCTCTTGTGCTTCGCCGAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

97

Amino Acids

11.35

Weight (kDa)

7.68

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	43 - 75	4.5e-10	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	167, 195
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	57, 109
ApoI	RAATTY	2 cut(s)	167, 195
AspS9I	GGNCC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	69, 96
BceAI	ACGGC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	58, 110
BlsI	GCNGC	2 cut(s)	59, 111
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	66, 267
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	69, 96
BspCNI	CTCAG	2 cut(s)	67, 266
BsrI	ACTGG	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	176, 209
BstDEI	CTNAG	3 cut(s)	6, 75, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	69, 96
Bsu36I	CCTNAGG	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	3 cut(s)	34, 109, 265
CviKI_1	RGCY	3 cut(s)	34, 109, 265
DdeI	CTNAG	3 cut(s)	6, 75, 253
Eam1104I	CTCTTC	2 cut(s)	176, 209
EarI	CTCTTC	2 cut(s)	176, 209
Eco47I	GGWCC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 163, 165
FatI	CATG	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	58, 110
Fsp4HI	GCNGC	2 cut(s)	58, 110
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	58, 110
GsuI	CTGGAG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	2 cut(s)	257, 286
Hpy188I	TCNGA	3 cut(s)	143, 180, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	6, 75, 253
Hsp92II	CATG	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	48, 56, 114
Lsp1109I	GCAGC	2 cut(s)	69, 96
MaeI	CTAG	1 cut(s)	54
MboII	GAAGA	3 cut(s)	193, 218, 226
MluCI	AATT	2 cut(s)	167, 195
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	7, 142, 235, 252
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	163
NlaIII	CATG	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	59, 111
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	58, 110
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	251
SetI	ASST	3 cut(s)	12, 111, 227
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	167, 195
SspMI	CTAG	1 cut(s)	54
TasI	AATT	2 cut(s)	167, 195
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	2 cut(s)	57, 109
TspDTI	ATGAA	3 cut(s)	107, 180, 188
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	2 cut(s)	167, 195
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.