Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1669403 .. 1671973

Gene Structure 2571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAGGTAGTACTGGTTTTCACTCTACTCGTGCTCGTTCTCTGCCACCTGGTCTCGGCCGAGATCAACCCAGCTCACCTAGGTGGTACTTTTAGTCGCAGTTCTCGTGAGCCAAAGTACAAGATTGAATTCCATTCTGAAGAGTCACCTTTTCCTCCTGAAGATGATCAGGAGTCTGTGGTCATGCCCAATAAGAATGGACAGAACTTTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACGCCAGATGAGCTGCTTGAAATACTCAAGGAACAATGCTTTATCAGACAAGAGGGTTGGTGGTCGTATGAATTTTGCTATCAGAAGAAATTACGACAAATTCATGTGGAAGATGAGAAGGTGCTTCAGGAATTTGTTTTAGGTATATATGATGCTGAGGCCACTGCTGCATCCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTATCATCCTCATCAATATACAAACGGAACCACTTGTGATCTTACAAACCAACCTCGAGAGACTGAGGTGAGATTTGTATGCTCAGAGCCGAGAGCTATGATTAGTTCAATTACCGAGATATCCACTTGCAAGTACGCAGTTACAATTCAATGCCCCACACTTTGCAAGCATCCATTATTCCAAGCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTTCTTCCCAAGGATTACAAGGAAACCCAAGTTGAGGATGAAGTATCTGAAATTAAGCAGATAGACATGGTCAGAGACAATGAATCTCAGTCCAATGGCGATTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

295

Amino Acids

33.89

Weight (kDa)

5.12

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	117 - 196	4.7e-18	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	128, 386, 414, 446
AcuI	CTGAAG	3 cut(s)	159, 180, 425
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	4 cut(s)	12, 88, 119, 686
AfiI	CCNNNNNNNGG	2 cut(s)	55, 805
AgeI	ACCGGT	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	128, 335, 660, 701
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	74, 239, 328, 647
AluI	AGCT	4 cut(s)	74, 239, 328, 647
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	4 cut(s)	58, 605, 736, 840
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	2 cut(s)	57, 474
ApeKI	GCWGC	3 cut(s)	276, 328, 482
ApoI	RAATTY	4 cut(s)	128, 386, 414, 446
AseI	ATTAAT	1 cut(s)	762
AsiGI	ACCGGT	1 cut(s)	745
AspA2I	CCTAGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	68, 138, 631
AvaI	CYCGRG	1 cut(s)	606
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	225
BauI	CACGAG	2 cut(s)	29, 105
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	288, 315, 469
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	4 cut(s)	58, 605, 736, 840
BfaI	CTAG	2 cut(s)	80, 273
BisI	GCNGC	3 cut(s)	277, 329, 483
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	3 cut(s)	278, 330, 484
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	4 cut(s)	457, 494, 529, 730
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	2 cut(s)	58, 736
BsaJI	CCNNGG	2 cut(s)	79, 780
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 805
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	79, 780
BseGI	GGATG	5 cut(s)	485, 556, 721, 814, 883
BseLI	CCNNNNNNNGG	2 cut(s)	55, 805
BseMII	CTCAG	5 cut(s)	285, 462, 606, 648, 872
BseNI	ACTGG	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	288, 315, 469
BseYI	CCCAGC	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 476
BshTI	ACCGGT	1 cut(s)	745
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	55, 805
BsmAI	GTCTC	4 cut(s)	58, 605, 736, 840
BsnI	GGCC	2 cut(s)	59, 476
Bso31I	GGTCTC	2 cut(s)	58, 736
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	63, 166, 523, 589
BspANI	GGCC	2 cut(s)	59, 476
BspCNI	CTCAG	5 cut(s)	286, 463, 607, 647, 871
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	518
BspTNI	GGTCTC	2 cut(s)	58, 736
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	79, 780
BssMI	GATC	4 cut(s)	63, 166, 523, 589
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	2 cut(s)	29, 105
BssT1I	CCWWGG	2 cut(s)	79, 780
Bst2BI	CACGAG	2 cut(s)	29, 105
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	719
BstDEI	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 634, 858
BstF5I	GGATG	5 cut(s)	485, 556, 721, 814, 883
BstKTI	GATC	4 cut(s)	66, 169, 526, 592
BstMAI	GTCTC	4 cut(s)	58, 605, 736, 840
BstMBI	GATC	4 cut(s)	63, 166, 523, 589
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 482
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	288, 315, 469
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	59, 476
BtsCI	GGATG	5 cut(s)	485, 556, 721, 814, 883
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	745
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	11, 87, 118, 685
CspAI	ACCGGT	1 cut(s)	745
CviAII	CATG	5 cut(s)	184, 220, 280, 419, 838
CviJI	RGCY	9 cut(s)	59, 74, 112, 239, 253, 328, 476, 640, 647
CviKI_1	RGCY	9 cut(s)	59, 74, 112, 239, 253, 328, 476, 640, 647
CviQI	GTAC	4 cut(s)	11, 87, 118, 685
DdeI	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 634, 858
DpnI	GATC	4 cut(s)	65, 168, 525, 591
DpnII	GATC	4 cut(s)	63, 166, 523, 589
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	79, 780
Eco31I	GGTCTC	2 cut(s)	58, 736
Eco32I	GATATC	1 cut(s)	672
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	159, 180, 425
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	2 cut(s)	79, 780
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	2 cut(s)	79, 780
FaeI	CATG	5 cut(s)	187, 223, 283, 422, 841
FatI	CATG	5 cut(s)	183, 219, 279, 418, 837
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	277, 329, 483
FokI	GGATG	4 cut(s)	472, 543, 708, 821
Fsp4HI	GCNGC	3 cut(s)	277, 329, 483
FspBI	CTAG	2 cut(s)	80, 273
GluI	GCNGC	3 cut(s)	277, 329, 483
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	59, 476
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	187, 223, 283, 422, 841
HinfI	GANTC	5 cut(s)	143, 173, 496, 854, 872
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	68, 138, 631
Hpy188I	TCNGA	8 cut(s)	139, 362, 399, 505, 637, 820, 845, 877
Hpy188III	TCNNGA	5 cut(s)	107, 158, 170, 443, 608
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	485, 542, 681, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 482
HpyF3I	CTNAG	7 cut(s)	225, 240, 294, 471, 615, 634, 858
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	5 cut(s)	187, 223, 283, 422, 841
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	63, 166, 523, 589
Lsp1109I	GCAGC	3 cut(s)	288, 315, 469
LweI	GCATC	4 cut(s)	457, 494, 529, 730
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	2 cut(s)	80, 273
MaeIII	GTNAC	3 cut(s)	144, 215, 691
MalI	GATC	4 cut(s)	65, 168, 525, 591
MboI	GATC	4 cut(s)	63, 166, 523, 589
MboII	GAAGA	6 cut(s)	152, 173, 325, 412, 437, 767
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	152, 182
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	165, 226, 361, 466, 570, 610, 615, 799
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	4 cut(s)	306, 519, 762, 825
MslI	CAYNNNNRTG	2 cut(s)	81, 284
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	325, 482
NdeII	GATC	4 cut(s)	63, 166, 523, 589
NlaIII	CATG	5 cut(s)	187, 223, 283, 422, 841
NlaIV	GGNNCC	1 cut(s)	580
NmeAIII	GCCGAG	3 cut(s)	35, 85, 666
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	496, 854, 872
PflFI	GACNNNGTC	1 cut(s)	839
PinAI	ACCGGT	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	278, 330, 484
PleI	GAGTC	2 cut(s)	151, 181
PpsI	GAGTC	2 cut(s)	151, 181
PshBI	ATTAAT	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	523
PsyI	GACNNNGTC	1 cut(s)	839
RsaI	GTAC	4 cut(s)	12, 88, 119, 686
RsaNI	GTAC	4 cut(s)	11, 87, 118, 685
RseI	CAYNNNNRTG	2 cut(s)	81, 284
SaqAI	TTAA	4 cut(s)	306, 519, 762, 825
SatI	GCNGC	3 cut(s)	277, 329, 483
Sau3AI	GATC	4 cut(s)	63, 166, 523, 589
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	152, 182
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	36
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	4 cut(s)	457, 494, 529, 730
Sfr274I	CTCGAG	1 cut(s)	606
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	2 cut(s)	81, 284
SmlI	CTYRAG	2 cut(s)	341, 606
SmoI	CTYRAG	2 cut(s)	341, 606
SspMI	CTAG	2 cut(s)	80, 273
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	79, 780
TaqI	TCGA	1 cut(s)	607
TatI	WGTACW	2 cut(s)	10, 117
TfiI	GAWTC	3 cut(s)	496, 854, 872
Tru1I	TTAA	4 cut(s)	306, 519, 762, 825
Tru9I	TTAA	4 cut(s)	306, 519, 762, 825
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	276, 328, 482
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	6 cut(s)	17, 326, 399, 407, 825, 867
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	839
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	4 cut(s)	128, 386, 414, 446
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	606
XmaJI	CCTAGG	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 273
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.