Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Forward (+)

56267609 .. 56269616

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0471900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCATTAGCTGTTACAGAAGCAGCAGCAACAACAACGTTAACCTCATTGCCAAAGCCAAATAACACCGGCAAGATCCCAGTTACTGTCATCAGCTACAAGGACTGGTCACCCCAAGATGATGGCATTGGGGTTATCTTGTCTCCAACTGAAATACCTTCAATGAAGGAAGATACGGATGCACCCAGCAATGCTGTGCTGAGTCTTGTCTATGGTTCTACTACAAGAAGAAGATTGCCACTGTTTGCTGAATTTGCCCTGAGTAGGAAAATTTGGTACCAACTATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

6.14

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AclI	AACGTT	1 cut(s)	38
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	251, 270
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	162
AluBI	AGCT	2 cut(s)	11, 96
AluI	AGCT	2 cut(s)	11, 96
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	23, 26
ApoI	RAATTY	2 cut(s)	251, 270
Asp718I	GGTACC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
BmiI	GGNNCC	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	80, 110
Bse3DI	GCAATG	2 cut(s)	47, 196
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	2 cut(s)	47, 196
BseMII	CTCAG	2 cut(s)	191, 251
BseNI	ACTGG	2 cut(s)	80, 110
BseXI	GCAGC	2 cut(s)	35, 38
BseYI	CCCAGC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	192, 252
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	47, 196
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	80, 110
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	88, 243
BstDEI	CTNAG	2 cut(s)	200, 260
BstEII	GGTNACC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	35, 38
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	3 cut(s)	11, 58, 96
CviKI_1	RGCY	3 cut(s)	11, 58, 96
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	200, 260
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	108
FaiI	YATR	2 cut(s)	213, 286
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	24, 27
GluI	GCNGC	2 cut(s)	24, 27
GsaI	CCCAGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	202
HpaI	GTTAAC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	160, 168
HpyCH4III	ACNGT	2 cut(s)	88, 243
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	200, 260
HpySE526I	ACGT	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	82, 91, 93, 199, 272
Lsp1109I	GCAGC	2 cut(s)	35, 38
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	3 cut(s)	13, 82, 108
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	182, 240, 243
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	2 cut(s)	251, 270
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	41
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	25, 28
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	211
SetI	ASST	5 cut(s)	13, 41, 47, 98, 160
SfaNI	GCATC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	251, 270
TaaI	ACNGT	2 cut(s)	88, 243
TaiI	ACGT	1 cut(s)	41
TasI	AATT	2 cut(s)	251, 270
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	23, 26
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	2 cut(s)	251, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.