Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

75345952 .. 75350587

Gene Structure 4636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATTAGTTCGATTACAGAGATATCCACCTACAAGTATGCAGTTGCTATTAAATGCCCCACACTTTGCAAGCATCCATTATTCCAAGCAGAGAGACCGGTATGGGAGACCATTAATTGTAATGTGCTTCCCAAAGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTGAAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

60

Amino Acids

6.96

Weight (kDa)

4.97

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	88, 101
AseI	ATTAAT	1 cut(s)	114
AsiGI	ACCGGT	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	88, 101
BmsI	GCATC	1 cut(s)	82
BsaI	GGTCTC	2 cut(s)	88, 101
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	97
BseGI	GGATG	2 cut(s)	73, 166
BseLI	CCNNNNNNNGG	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	88, 101
Bso31I	GGTCTC	2 cut(s)	88, 101
BspTNI	GGTCTC	2 cut(s)	88, 101
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	73, 166
BstMAI	GTCTC	2 cut(s)	88, 101
BtsCI	GGATG	2 cut(s)	73, 166
Cac8I	GCNNGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	97
Eco31I	GGTCTC	2 cut(s)	88, 101
Eco32I	GATATC	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	24
FaiI	YATR	2 cut(s)	39, 103
FokI	GGATG	2 cut(s)	60, 173
HapII	CCGG	1 cut(s)	98
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	41, 69
LpnPI	CCDG	1 cut(s)	111
LweI	GCATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	2 cut(s)	115, 174
MnlI	CCTC	1 cut(s)	151
MseI	TTAA	3 cut(s)	51, 114, 177
MspI	CCGG	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	51, 114, 177
SetI	ASST	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	82
SgeI	CNNG	6 cut(s)	46, 82, 98, 110, 154, 164
Sse9I	AATT	2 cut(s)	115, 174
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	115, 174
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	51, 114, 177
Tru9I	TTAA	3 cut(s)	51, 114, 177
TspDTI	ATGAA	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.