Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

1784267 .. 1786316

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG025300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGGTAGTACTGGTTTTCACTCTACTCGCGCTCGTTCTCTTCCACCTGGTCTCGGCCGAGATCAACCCAGCTCACCTAGGTGGTACTTTTAGTCGCAGTTCTCGTGAGCCAAAGTACAAGATTGAATTCCATTCTGAAGAGTCACCTTTTCCTCCTGAAGATGATCAGGAGTCTGTGGTTATGCCCAATAAGAATGGACAGAACTTTATATGTTACATGCCTAAGGTGGAGGAAGCTAAGAGTGGGAAGCCAATTCTCCAGCAGAATACTAGCAGCATGATTGTGGAAACTGAGAAACGAGTTAAGATGAAGACGCCAGATGAGCTGCTTGAAATACTCAAGGGCCAATGCTTTATCAGAGAAGAGGGTTGGTGGTCGTATGAATTTTGCTATCAGAATCAATTACGACAAATTCATGTGGAAGATGGGAAGATGCTTCAGGAATTTGTTTTAGGTGTATATGATGCTGAGGGCACTGCGGCATTCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGATGCATACCAAAGGTCTGATTTTGTTTTTATGAAAATTTGCTGGACATGGAAGACTTGCTGCAGATCAGAACAAAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

206

Amino Acids

23.98

Weight (kDa)

5.67

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	116 - 165	6.6e-12	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	5 cut(s)	128, 386, 414, 446, 573
AcuI	CTGAAG	3 cut(s)	159, 180, 425
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	3 cut(s)	12, 88, 119
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	128, 335, 490
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	74, 239, 328
AluI	AGCT	3 cut(s)	74, 239, 328
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	2 cut(s)	57, 346
ApeKI	GCWGC	3 cut(s)	276, 328, 597
ApoI	RAATTY	5 cut(s)	128, 386, 414, 446, 573
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	68, 138
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	320, 596
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	288, 315, 584
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	80, 273
BfmI	CTRYAG	1 cut(s)	598
BisI	GCNGC	4 cut(s)	277, 329, 483, 598
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	4 cut(s)	278, 330, 484, 599
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	426, 457, 529
BpiI	GAAGAC	2 cut(s)	320, 596
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	285, 462
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	479
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	288, 315, 584
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 348
BsiEI	CGRYCG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	59, 348
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	63, 166, 523, 602
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	59, 348
BspCNI	CTCAG	2 cut(s)	286, 463
BspFNI	CGCG	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	602
BspPI	GGATC	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	4 cut(s)	63, 166, 523, 602
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	3 cut(s)	47, 135, 360
BstACI	GRCGYC	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	225, 240, 294, 471
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	4 cut(s)	66, 169, 526, 605
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	4 cut(s)	63, 166, 523, 602
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	288, 315, 584
BstV2I	GAAGAC	2 cut(s)	320, 596
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	59, 348
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	11, 87, 118
CviAII	CATG	4 cut(s)	220, 280, 419, 585
CviJI	RGCY	7 cut(s)	59, 74, 112, 239, 253, 328, 348
CviKI_1	RGCY	7 cut(s)	59, 74, 112, 239, 253, 328, 348
CviQI	GTAC	3 cut(s)	11, 87, 118
DdeI	CTNAG	4 cut(s)	225, 240, 294, 471
DpnI	GATC	4 cut(s)	65, 168, 525, 604
DpnII	GATC	4 cut(s)	63, 166, 523, 602
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	47, 135, 360
EarI	CTCTTC	3 cut(s)	47, 135, 360
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	159, 180, 425
Eco81I	CCTNAGG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	223, 283, 422, 588
FatI	CATG	4 cut(s)	219, 279, 418, 584
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	277, 329, 483, 598
Fsp4HI	GCNGC	4 cut(s)	277, 329, 483, 598
FspBI	CTAG	2 cut(s)	80, 273
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	277, 329, 483, 598
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	59, 348
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	223, 283, 422, 588
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	4 cut(s)	143, 173, 400, 496
HphI	GGTGA	2 cut(s)	68, 138
Hpy188I	TCNGA	6 cut(s)	139, 362, 399, 505, 556, 607
Hpy188III	TCNNGA	4 cut(s)	107, 158, 170, 443
HpyCH4V	TGCA	2 cut(s)	542, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	4 cut(s)	225, 240, 294, 471
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	223, 283, 422, 588
HspAI	GCGC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	63, 166, 523, 602
Lsp1109I	GCAGC	3 cut(s)	288, 315, 584
LweI	GCATC	3 cut(s)	426, 457, 529
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	2 cut(s)	80, 273
MaeIII	GTNAC	2 cut(s)	144, 215
MalI	GATC	4 cut(s)	65, 168, 525, 604
MboI	GATC	4 cut(s)	63, 166, 523, 602
MboII	GAAGA	8 cut(s)	34, 152, 173, 325, 377, 437, 445, 601
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	7 cut(s)	128, 255, 386, 404, 414, 446, 573
MlyI	GAGTC	2 cut(s)	152, 182
MnlI	CCTC	4 cut(s)	165, 226, 361, 466
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	3 cut(s)	306, 519, 619
MslI	CAYNNNNRTG	2 cut(s)	81, 284
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	4 cut(s)	63, 166, 523, 602
NlaIII	CATG	4 cut(s)	223, 283, 422, 588
NmeAIII	GCCGAG	2 cut(s)	35, 85
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	400, 496
PkrI	GCNGC	4 cut(s)	278, 330, 484, 599
PleI	GAGTC	2 cut(s)	151, 181
PpsI	GAGTC	2 cut(s)	151, 181
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	12, 88, 119
RsaNI	GTAC	3 cut(s)	11, 87, 118
RseI	CAYNNNNRTG	2 cut(s)	81, 284
SaqAI	TTAA	3 cut(s)	306, 519, 619
SatI	GCNGC	4 cut(s)	277, 329, 483, 598
Sau3AI	GATC	4 cut(s)	63, 166, 523, 602
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	152, 182
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	479
SexAI	ACCWGGT	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	426, 457, 529
SfcI	CTRYAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	2 cut(s)	81, 284
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	7 cut(s)	128, 255, 386, 404, 414, 446, 573
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	2 cut(s)	80, 273
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	79
TasI	AATT	7 cut(s)	128, 255, 386, 404, 414, 446, 573
TatI	WGTACW	2 cut(s)	10, 117
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	400, 496
Tru1I	TTAA	3 cut(s)	306, 519, 619
Tru9I	TTAA	3 cut(s)	306, 519, 619
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	276, 328, 597
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	5 cut(s)	17, 326, 399, 407, 584
TspRI	CASTG	1 cut(s)	484
XapI	RAATTY	5 cut(s)	128, 386, 414, 446, 573
XceI	RCATGY	1 cut(s)	223
XmaJI	CCTAGG	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 273
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.