Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010698.1

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

61791 .. 64689

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010698.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgactgtatatgcatcagcaggtggtacttttagtcgcagttctcgtgagccaaagtacaagattgaattccattctgaagagtcaccttttcctcctgaagatgatcaggagtctgtggttatgcccaataagaatggacagaactttatatgttacatgcctaaggtggaggaagctaagagtgggaagccaattctccagcagaatactagcagcatgattgtggaaactgagaaacgagttaagatgaagacgccagatgaactgcttgaaatactcaagggccaatgctttatcagagaagagggttggtggtcgtatgaattttgctatcagaatcaattacgacaaattcatgtggaagatgggaagatgcttcaggaatttgttttaggtgtatatgatgctgaggccactgcggcattcaaccagaatctctctgacatatctttgcttaaagatccacgctcaaaagatgcataccaaaggtatcatcctcatcaatatacaaacggaaccacttgtgatcttacaaaccaacctcgagagactgaggtgagatttgtatgctctgagcgagctatgattagttcaattaccgagatatccacttgcaagtatgcagttacaattcaatgccccacactttgcaagcatccattattccaagcagagagaccggtatggcagaccattaattgtaatgttcttcccaaggattacaaggaaaccaaagttgaggatgaagtatctgaaattaagcagatagatatggtcacagacaatgaatctcagtccaatggcgattcggatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

273

Amino Acids

31.43

Weight (kDa)

4.93

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	4 cut(s)	68, 326, 354, 386
AcuI	CTGAAG	3 cut(s)	99, 120, 365
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	28, 59
AgeI	ACCGGT	1 cut(s)	682
AgsI	TTSAA	5 cut(s)	68, 275, 430, 597, 638
AluBI	AGCT	2 cut(s)	179, 584
AluI	AGCT	2 cut(s)	179, 584
Alw26I	GTCTC	2 cut(s)	545, 673
AlwI	GGATC	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	286, 414
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	4 cut(s)	68, 326, 354, 386
AseI	ATTAAT	1 cut(s)	699
AsiGI	ACCGGT	1 cut(s)	682
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	78, 571
AvaI	CYCGRG	1 cut(s)	546
AxyI	CCTNAGG	1 cut(s)	165
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	545, 673
BfaI	CTAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	217, 423
BlsI	GCNGC	2 cut(s)	218, 424
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	520
BmsI	GCATC	5 cut(s)	23, 366, 397, 469, 667
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	682
Bse118I	RCCGGY	1 cut(s)	682
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	4 cut(s)	496, 658, 751, 820
BseMII	CTCAG	5 cut(s)	225, 402, 546, 567, 809
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	2 cut(s)	288, 416
BshTI	ACCGGT	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	683
BsmAI	GTCTC	2 cut(s)	545, 673
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	288, 416
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	106, 463, 529
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	288, 416
BspCNI	CTCAG	5 cut(s)	226, 403, 547, 568, 808
BspLI	GGNNCC	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	3 cut(s)	106, 463, 529
BssNI	GRCGYC	1 cut(s)	257
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	2 cut(s)	75, 300
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	582, 656
BstDEI	CTNAG	7 cut(s)	165, 180, 234, 411, 555, 576, 795
BstF5I	GGATG	4 cut(s)	496, 658, 751, 820
BstKTI	GATC	3 cut(s)	109, 466, 532
BstMAI	GTCTC	2 cut(s)	545, 673
BstMBI	GATC	3 cut(s)	106, 463, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	288, 416
BtsCI	GGATG	4 cut(s)	496, 658, 751, 820
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	582, 656
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	27, 58
CspAI	ACCGGT	1 cut(s)	682
CviAII	CATG	3 cut(s)	160, 220, 359
CviJI	RGCY	6 cut(s)	52, 179, 193, 288, 416, 584
CviKI_1	RGCY	6 cut(s)	52, 179, 193, 288, 416, 584
CviQI	GTAC	2 cut(s)	27, 58
DdeI	CTNAG	7 cut(s)	165, 180, 234, 411, 555, 576, 795
DpnI	GATC	3 cut(s)	108, 465, 531
DpnII	GATC	3 cut(s)	106, 463, 529
Eam1104I	CTCTTC	2 cut(s)	75, 300
EarI	CTCTTC	2 cut(s)	75, 300
Eco130I	CCWWGG	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	609
Eco57I	CTGAAG	3 cut(s)	99, 120, 365
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	717
EcoT22I	ATGCAT	2 cut(s)	16, 484
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	3 cut(s)	163, 223, 362
FatI	CATG	3 cut(s)	159, 219, 358
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	217, 423
FokI	GGATG	3 cut(s)	483, 645, 758
Fsp4HI	GCNGC	2 cut(s)	217, 423
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	217, 423
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	288, 416
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	163, 223, 362
HinfI	GANTC	6 cut(s)	83, 113, 340, 436, 791, 809
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	2 cut(s)	78, 571
Hpy188I	TCNGA	7 cut(s)	79, 302, 339, 445, 577, 757, 814
Hpy188III	TCNNGA	5 cut(s)	47, 98, 110, 383, 548
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	14, 482, 618, 626, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	7 cut(s)	165, 180, 234, 411, 555, 576, 795
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	163, 223, 362
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 463, 529
LpnPI	CCDG	8 cut(s)	6, 95, 111, 215, 273, 368, 446, 696
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	5 cut(s)	23, 366, 397, 469, 667
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	4 cut(s)	84, 155, 628, 778
MalI	GATC	3 cut(s)	108, 465, 531
MboI	GATC	3 cut(s)	106, 463, 529
MboII	GAAGA	7 cut(s)	92, 113, 265, 317, 377, 385, 704
MflI	RGATCY	1 cut(s)	463
MlyI	GAGTC	2 cut(s)	92, 122
MnlI	CCTC	8 cut(s)	105, 166, 301, 406, 510, 550, 555, 736
Mph1103I	ATGCAT	2 cut(s)	16, 484
MseI	TTAA	4 cut(s)	246, 459, 699, 762
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	1 cut(s)	683
Mva1269I	GAATGC	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	3 cut(s)	106, 463, 529
NlaIII	CATG	3 cut(s)	163, 223, 362
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	84, 778
NsiI	ATGCAT	2 cut(s)	16, 484
NspI	RCATGY	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	4 cut(s)	340, 436, 791, 809
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	218, 424
PleI	GAGTC	2 cut(s)	91, 121
PpsI	GAGTC	2 cut(s)	91, 121
PshBI	ATTAAT	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	2 cut(s)	28, 59
RsaNI	GTAC	2 cut(s)	27, 58
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	246, 459, 699, 762
SatI	GCNGC	2 cut(s)	217, 423
Sau3AI	GATC	3 cut(s)	106, 463, 529
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	92, 122
SetI	ASST	9 cut(s)	25, 91, 171, 181, 400, 494, 547, 561, 586
SfaNI	GCATC	5 cut(s)	23, 366, 397, 469, 667
Sfr274I	CTCGAG	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	281, 546
SmoI	CTYRAG	2 cut(s)	281, 546
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	547
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	4 cut(s)	340, 436, 791, 809
Tru1I	TTAA	4 cut(s)	246, 459, 699, 762
Tru9I	TTAA	4 cut(s)	246, 459, 699, 762
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	84, 778
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	2 cut(s)	84, 778
TspDTI	ATGAA	6 cut(s)	266, 279, 339, 347, 762, 804
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	424
VspI	ATTAAT	1 cut(s)	699
XapI	RAATTY	4 cut(s)	68, 326, 354, 386
XceI	RCATGY	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	546
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	2 cut(s)	16, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.