Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

57057104 .. 57058305

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACGGCAACTTGTAGGCGGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACGGACAAGGTGAGATTTGTATGCTCAGAGCTGAGAGCTATGATTAGTTCAATTACAGAGATATCCACCTGCAAGTATGCAGTTGCAATTAAATGCCCCACACTTTGCAAGCATCCATTATTCCAGTCAGAGAGACCGGTATGGCAGACCATTAATTGTAATGTACTTCCCAAGGATTACAAGGAAACCCAAGTTGAGGATGAAGAATCTAAAATTAAGCAGATAGTTATGGTCATAGACAGTGAATCTCATTCCAATGATGAATCTGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

6.89

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AciI	CCGC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	135
AluBI	AGCT	2 cut(s)	115, 122
AluI	AGCT	2 cut(s)	115, 122
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	237
AsiGI	ACCGGT	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	4 cut(s)	41, 46, 51, 106
AvaII	GGWCC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	196, 289
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	3 cut(s)	107, 123, 342
BseNI	ACTGG	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	19
BspCNI	CTCAG	3 cut(s)	108, 122, 343
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	109, 116, 351
BstF5I	GGATG	2 cut(s)	196, 289
BstMAI	GTCTC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	196, 289
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	248
CspAI	ACCGGT	1 cut(s)	220
CviJI	RGCY	2 cut(s)	115, 122
CviKI_1	RGCY	2 cut(s)	115, 122
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	109, 116, 351
Eco130I	CCWWGG	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaiI	YATR	7 cut(s)	84, 106, 125, 162, 226, 314, 320
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	183, 296
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	221
HinfI	GANTC	3 cut(s)	290, 329, 347
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	4 cut(s)	41, 46, 51, 106
Hpy188I	TCNGA	3 cut(s)	112, 214, 352
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	156, 164, 170, 192
HpyF3I	CTNAG	3 cut(s)	109, 116, 351
LpnPI	CCDG	4 cut(s)	78, 166, 221, 234
LweI	GCATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	5 cut(s)	73, 135, 171, 238, 297
MnlI	CCTC	4 cut(s)	57, 62, 67, 274
MseI	TTAA	3 cut(s)	174, 237, 300
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	290, 329, 347
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	174, 237, 300
SatI	GCNGC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	7 cut(s)	49, 54, 59, 96, 117, 124, 155
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	5 cut(s)	73, 135, 171, 238, 297
SsiI	CCGC	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	326
TasI	AATT	5 cut(s)	73, 135, 171, 238, 297
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	290, 329, 347
Tru1I	TTAA	3 cut(s)	174, 237, 300
Tru9I	TTAA	3 cut(s)	174, 237, 300
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	300, 360
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.