Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002781

Physical Location & Seq

Genomic Coordinates Reverse (-)

970525 .. 973547

Gene Structure 3023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGACGCTGCCATCGATGAAGGTTTCAAATTCAATACCTCTTCCCCTCTGCATCTCTCTGGTTCATCCTCGAGACGTAGCAACAGCAGAAGGTTTCAATACCTCTTCCTCCTCCTCCTCTCTCTCTCTCTCTGCTTCGCTCTGGTTTCTGCAACTTTTCGTTTTCTCTGAAGAGGTTGAAAAAATGAAGGTGTTGGTGTTTTTTGTTCAAGTTTTGTACGTTCTGAGTTGCCTCGTCTCCGCCGATCAGATCTTCCCGGCTCACCTAGGTGGCGCATTTCGTCGCAGCTCTCGTGAGCCAAAATACAGGATCGAATTCCATTCTGAAGACTCACCTTTTCATCCTGATGATGGCCAGGAGTCTCTGGTTATGAATAACAATGGACAAAATTTTATATGCTACTTGCCTAAGGTGGAGGAGGCCAAGAGTGGGAAGCAAGTTCTTCAGCAGAATATTAGCAGCATGATTGTGGAAACTGAGAAACGAATTAAAATGAAGACACCGGATGAACTGCTTGAAGTACTCGAGGACCAATGCTTTATCAGACAAGAGGGTTGGTGGTCATATGAATTTTGCTATCACAAGAGATTACGACAAATTCATGTGGAAGATGATAAGGTGGTTCAGGAATTTGTTTTGGGTGTATATGATGCAGAGGCTACTGCTGGTGTCAACCGGAACCTCTCTGACATATCTACACTCAAAGATCCACGCTCAAAAGATGCATACCAAAGGTACCATGCTCATCAATTTACAAACGGGACTACTTGTGATCTTACAGACCTGCAACGAGAGACTGAGGTGAGATTTGCGTGCTCAGAGGGCAGAGCTATGATTAATTCAATCACAGAGGTATCCACATGCAAGTATGCAGTTACAATCCAATGCCCCACACTTTGCAAGCACCCAGCATTCCAATCAGAGAGACCAGTATGGCAGACCATTGATTGTAACGTGCTTCCCAAGGATTACAAGGAAACCAAAGCAGAGGAAGAATCTAATCCGGTTGCAGACGCAGATAGTGAAGATGCCGCCAATGAGGTTTCGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0030970 GO:0031974 GO:0032527 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH

Protein Analysis

352

Amino Acids

39.85

Weight (kDa)

4.98

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRKCSH	PF07915	177 - 257	3.6e-17	Glucosidase II beta subunit-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35080
fragaria_vesca	FvH4_1g02000
malus_domestica	MD02G1018200.v1.1 MD15G1162200.v1.1
prunus_persica	Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1 Prupe.7G257600_v2.0.a1
pyrus_communis	pycom02g01630
rosa_chinensis	RchiOBHm_Chr1g0314561 RchiOBHm_Chr2g0087061 RchiOBHm_Chr5g0069501 RchiOBHm_Chr7g0241391
rosa_laevigata	RLG00000002275 RLG00000015825 RLG00000036067 RLG00000036074
rosa_multiflora	Rmu_sc0000902.1_g000015 Rmu_sc0010698.1_g000015
rosa_roxburghii	Rroxscaffold_2G00153930
rosa_rugosa	Rorug01G0471800.1 Rorug01G0471900 Rorug02G0634900 Rorug07G0186900
rosa_samantha	Rh1AG011400 Rh2AG025300 Rh2BG025100 Rh2BG052100 Rh2BG213900 Rh2CG025600 Rh2CG054200 Rh2DG025500 Rh5CG497900 Rh7BG320700 Rh7CG348300 Rh7CG436400
rosa_wichuraiana	Rw0G022880 Rw2G002010 Rw4G004450 Rw7G027860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	792
Acc65I	GGTACC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	735
AciI	CCGC	2 cut(s)	240, 1032
AclWI	GGATC	2 cut(s)	317, 701
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	6 cut(s)	28, 314, 388, 569, 597, 629
AcuI	CTGAAG	3 cut(s)	189, 345, 428
AfaI	GTAC	3 cut(s)	218, 522, 737
AfiI	CCNNNNNNNGG	2 cut(s)	350, 429
AgsI	TTSAA	7 cut(s)	27, 33, 97, 179, 209, 518, 843
AjnI	CCWGG	1 cut(s)	354
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	288, 830
AluI	AGCT	2 cut(s)	288, 830
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	5 cut(s)	66, 241, 366, 788, 919
AlwI	GGATC	2 cut(s)	317, 701
Ama87I	CYCGRG	2 cut(s)	69, 524
AoxI	GGCC	2 cut(s)	352, 420
ApeKI	GCWGC	3 cut(s)	7, 285, 459
ApoI	RAATTY	6 cut(s)	28, 314, 388, 569, 597, 629
AseI	ATTAAT	1 cut(s)	837
Asp718I	GGTACC	1 cut(s)	735
AspA2I	CCTAGG	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	254, 324, 814
AvaI	CYCGRG	2 cut(s)	69, 524
AvaII	GGWCC	1 cut(s)	529
AvrII	CCTAGG	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	408
BaeI	ACNNNNGTAYC	2 cut(s)	837, 870
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	2 cut(s)	333, 503
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	2 cut(s)	297, 471
BccI	CCATC	2 cut(s)	19, 344
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	5 cut(s)	66, 241, 366, 788, 919
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	792
BfuI	GTATCC	1 cut(s)	865
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	4 cut(s)	8, 286, 460, 1032
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	4 cut(s)	9, 287, 461, 1033
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	2 cut(s)	257, 356
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	2 cut(s)	69, 524
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	2 cut(s)	680, 737
BmrFI	CCNGG	2 cut(s)	257, 356
BmsI	GCATC	4 cut(s)	60, 640, 712, 1018
BpiI	GAAGAC	2 cut(s)	333, 503
BpuMI	CCSGG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	919
BsaJI	CCNNGG	2 cut(s)	265, 963
BsaWI	WCCGGW	3 cut(s)	502, 675, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 429
Bse1I	ACTGG	1 cut(s)	929
Bse21I	CCTNAGG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	265, 963
BseGI	GGATG	4 cut(s)	64, 340, 511, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	350, 429
BseMII	CTCAG	4 cut(s)	215, 468, 789, 831
BseNI	ACTGG	1 cut(s)	929
BseRI	GAGGAG	4 cut(s)	100, 103, 106, 431
BseXI	GCAGC	2 cut(s)	297, 471
BseYI	CCCAGC	1 cut(s)	907
BshFI	GGCC	2 cut(s)	354, 422
BshNI	GGYRCC	1 cut(s)	735
BshVI	ATCGAT	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	818
BsiHKCI	CYCGRG	2 cut(s)	69, 524
BsiSI	CCGG	4 cut(s)	257, 503, 676, 1004
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	350, 429
BsmAI	GTCTC	5 cut(s)	66, 241, 366, 788, 919
BsmBI	CGTCTC	2 cut(s)	66, 241
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	2 cut(s)	354, 422
Bso31I	GGTCTC	1 cut(s)	919
BsoBI	CYCGRG	2 cut(s)	69, 524
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp143I	GATC	5 cut(s)	244, 249, 309, 706, 772
BspACI	CCGC	2 cut(s)	240, 1032
BspANI	GGCC	2 cut(s)	354, 422
BspCNI	CTCAG	4 cut(s)	216, 469, 790, 830
BspDI	ATCGAT	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	680, 737
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	317, 701
BspT107I	GGYRCC	1 cut(s)	735
BspTNI	GGTCTC	1 cut(s)	919
BsrI	ACTGG	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	265, 963
BssMI	GATC	5 cut(s)	244, 249, 309, 706, 772
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	265, 963
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	3 cut(s)	45, 109, 165
BstC8I	GCNNGC	2 cut(s)	814, 902
BstDEI	CTNAG	5 cut(s)	224, 408, 477, 798, 817
BstF5I	GGATG	4 cut(s)	64, 340, 511, 1054
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	5 cut(s)	247, 252, 312, 709, 775
BstMAI	GTCTC	5 cut(s)	66, 241, 366, 788, 919
BstMBI	GATC	5 cut(s)	244, 249, 309, 706, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	822
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	864
BstSCI	CCNGG	2 cut(s)	255, 354
BstV1I	GCAGC	2 cut(s)	297, 471
BstV2I	GAAGAC	2 cut(s)	333, 503
BstX2I	RGATCY	2 cut(s)	249, 706
BstYI	RGATCY	2 cut(s)	249, 706
Bsu15I	ATCGAT	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	865
BsuRI	GGCC	2 cut(s)	354, 422
BsuTUI	ATCGAT	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	64, 340, 511, 1054
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	2 cut(s)	814, 902
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	2 cut(s)	13, 1022
Csp6I	GTAC	3 cut(s)	217, 521, 736
CviAII	CATG	4 cut(s)	463, 602, 740, 861
CviJI	RGCY	7 cut(s)	260, 288, 298, 354, 422, 659, 830
CviKI_1	RGCY	7 cut(s)	260, 288, 298, 354, 422, 659, 830
CviQI	GTAC	3 cut(s)	217, 521, 736
DdeI	CTNAG	5 cut(s)	224, 408, 477, 798, 817
DpnI	GATC	5 cut(s)	246, 251, 311, 708, 774
DpnII	GATC	5 cut(s)	244, 249, 309, 706, 772
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	3 cut(s)	45, 109, 165
EarI	CTCTTC	3 cut(s)	45, 109, 165
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	265, 963
Eco31I	GGTCTC	1 cut(s)	919
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	3 cut(s)	189, 345, 428
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	69, 524
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	265, 963
EcoT22I	ATGCAT	1 cut(s)	727
ErhI	CCWWGG	2 cut(s)	265, 963
Esp3I	CGTCTC	2 cut(s)	66, 241
FaeI	CATG	4 cut(s)	466, 605, 743, 864
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	4 cut(s)	462, 601, 739, 860
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	4 cut(s)	8, 286, 460, 1032
FokI	GGATG	3 cut(s)	51, 327, 518
Fsp4HI	GCNGC	4 cut(s)	8, 286, 460, 1032
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	8, 286, 460, 1032
GsaI	CCCAGC	1 cut(s)	911
HaeIII	GGCC	2 cut(s)	354, 422
HapII	CCGG	4 cut(s)	257, 503, 676, 1004
HgaI	GACGC	2 cut(s)	13, 1022
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	466, 605, 743, 864
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	329, 359, 995
HpaII	CCGG	4 cut(s)	257, 503, 676, 1004
HphI	GGTGA	3 cut(s)	254, 324, 814
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	9 cut(s)	169, 225, 249, 325, 545, 688, 820, 922, 1048
Hpy188III	TCNNGA	4 cut(s)	71, 293, 344, 626
Hpy8I	GTNNAC	1 cut(s)	673
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	3 cut(s)	13, 83, 181
HpyCH4IV	ACGT	3 cut(s)	75, 219, 954
HpyCH4V	TGCA	9 cut(s)	51, 151, 653, 725, 787, 864, 872, 900, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	822
HpyF3I	CTNAG	5 cut(s)	224, 408, 477, 798, 817
HpySE526I	ACGT	3 cut(s)	75, 219, 954
Hsp92II	CATG	4 cut(s)	466, 605, 743, 864
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	244, 249, 309, 706, 772
Lsp1109I	GCAGC	2 cut(s)	297, 471
LweI	GCATC	4 cut(s)	60, 640, 712, 1018
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	3 cut(s)	75, 219, 954
MaeIII	GTNAC	2 cut(s)	874, 950
MalI	GATC	5 cut(s)	246, 251, 311, 708, 774
MboI	GATC	5 cut(s)	244, 249, 309, 706, 772
MflI	RGATCY	2 cut(s)	249, 706
MhlI	GDGCHC	1 cut(s)	818
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	9 cut(s)	28, 314, 388, 486, 569, 597, 629, 749, 838
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	323, 368
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	489, 837
MslI	CAYNNNNRTG	3 cut(s)	267, 345, 467
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	4 cut(s)	257, 503, 676, 1004
MspR9I	CCNGG	2 cut(s)	257, 356
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	822
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	5 cut(s)	244, 249, 309, 706, 772
NlaIII	CATG	4 cut(s)	466, 605, 743, 864
NlaIV	GGNNCC	2 cut(s)	680, 737
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	864
OliI	CACNNNNGTG	1 cut(s)	267
PaeR7I	CTCGAG	2 cut(s)	69, 524
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 240, 289
PctI	GAATGC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	995
PkrI	GCNGC	4 cut(s)	9, 287, 461, 1033
PleI	GAGTC	2 cut(s)	323, 367
PpsI	GAGTC	2 cut(s)	323, 367
PshBI	ATTAAT	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	907
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	680, 737
PspPI	GGNCC	1 cut(s)	529
PspXI	VCTCGAGB	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	249, 706
RsaI	GTAC	3 cut(s)	218, 522, 737
RsaNI	GTAC	3 cut(s)	217, 521, 736
RseI	CAYNNNNRTG	3 cut(s)	267, 345, 467
SaqAI	TTAA	2 cut(s)	489, 837
SatI	GCNGC	4 cut(s)	8, 286, 460, 1032
Sau3AI	GATC	5 cut(s)	244, 249, 309, 706, 772
Sau96I	GGNCC	1 cut(s)	529
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	2 cut(s)	323, 368
ScrFI	CCNGG	2 cut(s)	257, 356
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	4 cut(s)	60, 640, 712, 1018
Sfr274I	CTCGAG	2 cut(s)	69, 524
SinI	GGWCC	1 cut(s)	529
SlaI	CTCGAG	2 cut(s)	69, 524
SmiMI	CAYNNNNRTG	3 cut(s)	267, 345, 467
SmlI	CTYRAG	2 cut(s)	69, 524
SmoI	CTYRAG	2 cut(s)	69, 524
Sse9I	AATT	9 cut(s)	28, 314, 388, 486, 569, 597, 629, 749, 838
SsiI	CCGC	2 cut(s)	240, 1032
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	255, 354
StyI	CCWWGG	2 cut(s)	265, 963
TaiI	ACGT	3 cut(s)	78, 222, 957
TaqI	TCGA	4 cut(s)	14, 70, 312, 525
TasI	AATT	9 cut(s)	28, 314, 388, 486, 569, 597, 629, 749, 838
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	1034
TfiI	GAWTC	1 cut(s)	995
Tru1I	TTAA	2 cut(s)	489, 837
Tru9I	TTAA	2 cut(s)	489, 837
TseI	GCWGC	3 cut(s)	7, 285, 459
TspDTI	ATGAA	9 cut(s)	32, 53, 200, 329, 386, 509, 522, 582, 590
VpaK11BI	GGWCC	1 cut(s)	529
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	6 cut(s)	28, 314, 388, 569, 597, 629
XceI	RCATGY	1 cut(s)	864
XhoI	CTCGAG	2 cut(s)	69, 524
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.