Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Reverse (-)

1611043 .. 1613061

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGGAGGTTTGCGCGCAACAGCCTGGAAGGAGAATAAGGCTAGTATTTAATGATTGTCCTTACGTTTCATACGCACAGCTGCTCTTGGGTTATCTACCTCCTTCCCGGGATTTATGGGAAAAAGAACTGATCGAAAACCGACAAAAATATGCCAAGCTTAAAGAGGAGCTCCTCCTGAGTCCTTCACAAATCACAAAGAGAAAAATTGGTGATTTGAGTTATTGCGATCAGCCTGCTGACGGCAATGTTGATGGACCGCTGAAGCGATCTGAAATTTCCGAGGAAGATCACCCTTTAAGCCTTGGTAAGGCTAGTGTTTGGCATCAATACTTTCAGCATACAGAGATTGCAGAACAGATAGACCGCGATTTGCAACGAACACACCCGGATCTGAAATTCTTCTCAGGGGAGTCATCATTCAGCAGGAAACACAGGGAATCAATGAGAAGCATTCTTCTGCTGTTTGCAAAACTAAATCCAGCTATCCGTTACGTGCAAGGCATGAATGAGGTCTTGGCACCAATATACTATGTCTTTAGTACTGACCCGAATGAGCAAAATGCTGTAAGAGAATTGCCTGGAAATTTTTCTCATCTTTTTATTAGATGTCTTCTGTCTTATAAATCAGATAGCTTCTCTTGTTTTGTCCGACTCTTGAGTGACTCAGTGGATCACTTTTGCGAACAACTGGATAACAGTGCAGTTGGTATACTCTCCACTCTCTCCCGCTTGTCAGAATTATTGAAAGCCAACGATGAAGAACTGTGGAGGCATCTAGAGTTCACTACAAAGGATATGCTTCTAAAAGTTTGTTGCGCAATGCTGCTATGCGTGAAAAGTAGACTGTTAAGCGGCGATTTTGTGGCAAACTTAAAACTTCTGCAGCGCTATCCAGACATTAACATTGAACACCTTCTCCAGGTAGCTCGAGATCTTAGTTCTGACCCATCTTCGTATCGTTTGTCTTTGCCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

327

Amino Acids

37.56

Weight (kDa)

6.02

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	113 - 262	5e-20	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
Acc16I	TGCGCA	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	712, 844
AccII	CGCG	2 cut(s)	17, 369
AciI	CCGC	4 cut(s)	260, 367, 730, 855
AclWI	GGATC	2 cut(s)	399, 681
AcsI	RAATTY	3 cut(s)	276, 398, 586
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	544
AfeI	AGCGCT	1 cut(s)	890
AfiI	CCNNNNNNNGG	3 cut(s)	242, 310, 922
AgsI	TTSAA	2 cut(s)	748, 911
AjnI	CCWGG	3 cut(s)	25, 580, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AloI	GAACNNNNNNTCC	2 cut(s)	903, 935
AluBI	AGCT	6 cut(s)	82, 160, 172, 485, 636, 929
AluI	AGCT	6 cut(s)	82, 160, 172, 485, 636, 929
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	399, 681
Ama87I	CYCGRG	2 cut(s)	108, 930
Aor51HI	AGCGCT	1 cut(s)	890
ApeKI	GCWGC	3 cut(s)	82, 826, 886
ApoI	RAATTY	3 cut(s)	276, 398, 586
Asp700I	GAANNNNTTC	3 cut(s)	401, 589, 915
AspLEI	GCGC	4 cut(s)	17, 19, 821, 891
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	3 cut(s)	109, 110, 389
AsuHPI	GGTGA	2 cut(s)	224, 284
AvaI	CYCGRG	2 cut(s)	108, 930
AvaII	GGWCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	69, 813, 898
BccI	CCATC	2 cut(s)	248, 958
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	3 cut(s)	27, 582, 923
BcnI	CCSGG	3 cut(s)	109, 110, 389
BfaI	CTAG	3 cut(s)	44, 315, 779
BfmI	CTRYAG	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	892
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	4 cut(s)	83, 827, 856, 887
BlsI	GCNGC	4 cut(s)	84, 828, 857, 888
BmcAI	AGTACT	1 cut(s)	544
Bme1390I	CCNGG	6 cut(s)	27, 109, 110, 389, 582, 923
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	2 cut(s)	108, 930
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	6 cut(s)	27, 109, 110, 389, 582, 923
BmsI	GCATC	2 cut(s)	334, 784
BpiI	GAAGAC	1 cut(s)	605
BpmI	CTGGAG	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	679
BpuMI	CCSGG	3 cut(s)	109, 110, 389
BsaAI	YACGTR	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	108, 282, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 310, 922
Bse1I	ACTGG	1 cut(s)	696
Bse3DI	GCAATG	2 cut(s)	253, 828
BseBI	CCWGG	3 cut(s)	27, 582, 923
BseDI	CCNNGG	3 cut(s)	108, 282, 304
BseLI	CCNNNNNNNGG	3 cut(s)	242, 310, 922
BseMI	GCAATG	2 cut(s)	253, 828
BseMII	CTCAG	3 cut(s)	170, 420, 681
BseNI	ACTGG	1 cut(s)	696
BsePI	GCGCGC	1 cut(s)	15
BseRI	GAGGAG	3 cut(s)	20, 164, 182
BseXI	GCAGC	3 cut(s)	69, 813, 898
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	2 cut(s)	17, 369
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	2 cut(s)	108, 930
BsiSI	CCGG	2 cut(s)	109, 389
BslI	CCNNNNNNNGG	3 cut(s)	242, 310, 922
BsmI	GAATGC	1 cut(s)	453
BsoBI	CYCGRG	2 cut(s)	108, 930
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
BspACI	CCGC	4 cut(s)	260, 367, 730, 855
BspCNI	CTCAG	3 cut(s)	171, 419, 680
BspFNI	CGCG	2 cut(s)	17, 369
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	888
BspPI	GGATC	2 cut(s)	399, 681
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	253, 828
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	3 cut(s)	108, 282, 304
BssHII	GCGCGC	1 cut(s)	15
BssMI	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
BssNAI	GTATAC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	304
Bst1107I	GTATAC	1 cut(s)	713
Bst2UI	CCWGG	3 cut(s)	27, 582, 923
Bst4CI	ACNGT	4 cut(s)	701, 768, 849, 978
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	17, 237
BstDEI	CTNAG	4 cut(s)	179, 406, 667, 938
BstENI	CCTNNNNNAGG	2 cut(s)	308, 920
BstFNI	CGCG	2 cut(s)	17, 369
BstH2I	RGCGCY	1 cut(s)	892
BstHHI	GCGC	4 cut(s)	17, 19, 821, 891
BstKTI	GATC	7 cut(s)	135, 232, 272, 292, 394, 676, 937
BstMBI	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
BstNI	CCWGG	3 cut(s)	27, 582, 923
BstSCI	CCNGG	6 cut(s)	25, 107, 108, 387, 580, 921
BstSFI	CTRYAG	1 cut(s)	884
BstUI	CGCG	2 cut(s)	17, 369
BstV1I	GCAGC	3 cut(s)	69, 813, 898
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	2 cut(s)	391, 934
BstYI	RGATCY	2 cut(s)	391, 934
BstZ17I	GTATAC	1 cut(s)	713
BtsIMutI	CAGTG	3 cut(s)	675, 706, 974
Cac8I	GCNNGC	2 cut(s)	17, 237
CfoI	GCGC	4 cut(s)	17, 19, 821, 891
Cfr13I	GGNCC	1 cut(s)	257
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	4 cut(s)	179, 406, 667, 938
DpnI	GATC	7 cut(s)	134, 231, 271, 291, 393, 675, 936
DpnII	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	257
Eco47III	AGCGCT	1 cut(s)	890
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	108, 930
EcoICRI	GAGCTC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	2 cut(s)	308, 920
EcoRII	CCWGG	3 cut(s)	25, 580, 921
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	508
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	737
FblI	GTMKAC	2 cut(s)	712, 844
Fnu4HI	GCNGC	4 cut(s)	83, 827, 856, 887
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	83, 827, 856, 887
FspBI	CTAG	3 cut(s)	44, 315, 779
FspI	TGCGCA	1 cut(s)	820
GlaI	GCGC	4 cut(s)	16, 18, 820, 890
GluI	GCNGC	4 cut(s)	83, 827, 856, 887
GsuI	CTGGAG	1 cut(s)	905
HaeII	RGCGCY	1 cut(s)	892
HapII	CCGG	2 cut(s)	109, 389
HhaI	GCGC	4 cut(s)	17, 19, 821, 891
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	4 cut(s)	15, 17, 819, 889
HinP1I	GCGC	4 cut(s)	15, 17, 819, 889
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	181, 413, 440, 654, 665
HpaII	CCGG	2 cut(s)	109, 389
HphI	GGTGA	2 cut(s)	224, 284
Hpy166II	GTNNAC	3 cut(s)	713, 786, 845
Hpy188I	TCNGA	7 cut(s)	274, 283, 396, 631, 653, 739, 946
Hpy188III	TCNNGA	5 cut(s)	178, 658, 779, 896, 932
Hpy8I	GTNNAC	3 cut(s)	713, 786, 845
HpyAV	CCTTC	4 cut(s)	24, 114, 195, 926
HpyCH4III	ACNGT	4 cut(s)	701, 768, 849, 978
HpyCH4IV	ACGT	2 cut(s)	66, 495
HpyCH4V	TGCA	6 cut(s)	353, 376, 470, 499, 704, 886
HpyF3I	CTNAG	4 cut(s)	179, 406, 667, 938
HpySE526I	ACGT	2 cut(s)	66, 495
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	4 cut(s)	15, 17, 819, 889
Kzo9I	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
LmnI	GCTCC	2 cut(s)	169, 177
Lsp1109I	GCAGC	3 cut(s)	69, 813, 898
LweI	GCATC	2 cut(s)	334, 784
MaeI	CTAG	3 cut(s)	44, 315, 779
MaeII	ACGT	2 cut(s)	66, 495
MaeIII	GTNAC	2 cut(s)	491, 662
MalI	GATC	7 cut(s)	134, 231, 271, 291, 393, 675, 936
MboI	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
MboII	GAAGA	6 cut(s)	299, 394, 449, 605, 773, 945
MflI	RGATCY	2 cut(s)	391, 934
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	6 cut(s)	207, 276, 398, 575, 586, 740
MlyI	GAGTC	4 cut(s)	190, 422, 648, 659
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	6 cut(s)	111, 160, 185, 277, 505, 765
MroXI	GAANNNNTTC	3 cut(s)	401, 589, 915
MseI	TTAA	6 cut(s)	51, 162, 299, 851, 875, 903
MspA1I	CMGCKG	2 cut(s)	82, 262
MspI	CCGG	2 cut(s)	109, 389
MspR9I	CCNGG	6 cut(s)	27, 109, 110, 389, 582, 923
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	27, 582, 923
MvnI	CGCG	2 cut(s)	17, 369
NciI	CCSGG	3 cut(s)	109, 110, 389
NdeII	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	662
NsbI	TGCGCA	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	930
PauI	GCGCGC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	3 cut(s)	401, 589, 915
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	84, 828, 857, 888
PleI	GAGTC	4 cut(s)	189, 421, 648, 659
PpsI	GAGTC	4 cut(s)	189, 421, 648, 659
Ppu21I	YACGTR	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	25, 580, 921
PspGI	CCWGG	3 cut(s)	25, 580, 921
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	888
PsuI	RGATCY	2 cut(s)	391, 934
PteI	GCGCGC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	6 cut(s)	51, 162, 299, 851, 875, 903
SatI	GCNGC	4 cut(s)	83, 827, 856, 887
Sau3AI	GATC	7 cut(s)	132, 229, 269, 289, 391, 673, 934
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	544
SchI	GAGTC	4 cut(s)	190, 422, 648, 659
ScrFI	CCNGG	6 cut(s)	27, 109, 110, 389, 582, 923
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	334, 784
SfcI	CTRYAG	1 cut(s)	884
Sfr274I	CTCGAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	930
SmaI	CCCGGG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	658, 930
SmoI	CTYRAG	2 cut(s)	658, 930
Sse9I	AATT	6 cut(s)	207, 276, 398, 575, 586, 740
SsiI	CCGC	4 cut(s)	260, 367, 730, 855
SspMI	CTAG	3 cut(s)	44, 315, 779
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	6 cut(s)	25, 107, 108, 387, 580, 921
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	4 cut(s)	701, 768, 849, 978
TaiI	ACGT	2 cut(s)	69, 498
TaqI	TCGA	2 cut(s)	135, 931
TasI	AATT	6 cut(s)	207, 276, 398, 575, 586, 740
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	6 cut(s)	51, 162, 299, 851, 875, 903
Tru9I	TTAA	6 cut(s)	51, 162, 299, 851, 875, 903
TscAI	CASTG	3 cut(s)	675, 706, 981
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	82, 826, 886
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	3 cut(s)	60, 521, 774
TspGWI	ACGGA	1 cut(s)	479
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	3 cut(s)	675, 706, 981
VpaK11BI	GGWCC	1 cut(s)	257
XagI	CCTNNNNNAGG	2 cut(s)	308, 920
XapI	RAATTY	3 cut(s)	276, 398, 586
XbaI	TCTAGA	1 cut(s)	778
XhoI	CTCGAG	1 cut(s)	930
XmaI	CCCGGG	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	712, 844
XmnI	GAANNNNTTC	3 cut(s)	401, 589, 915
XspI	CTAG	3 cut(s)	44, 315, 779
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.