Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Reverse (-)

23214557 .. 23215120

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGGTGAATTCTTCAACTTCATTCAGGTATGGTCTTCAGTGTTTGCATGTTTCTTCTACAGCCATTCAATTGGGAAATTTGTCCCAAAAGGAACAACCAGACTTTTCTGTGTCCTCCCAGTTGTCTTCCTCTTCCTTTATCTTCCTCTCAACTTCTCCTCCATGCATCTTGAAGGTGGCACTGCCTTTTTCATTTCTTGGCTCGGCAGCTTCAAGCTCCTACTCTTTGCTTTTGGCAAAGGCCCCTTGGCTTCACATCCTCCAATCTCTATTGGACGTTTCTTGGCCATCGGTTGCCTTCCAATTGAGTTCCAAGAAAACCCACCTCCAAAATCCCCAAATCCCAAATTTGAAACCTACCCATCTCCCTCAAAATCCCACCCAAATGGCCAAATGACACAAAACCCACCTCCAAAATCTCAAACCCTAAAATTGAAACCTACCCATCTCCCTCAAAATCCAATCCAAATCGTCAAAACGGAGAAAACCCACCTAAAAAATCCCAAAATTCTAAAATTGAAACCAACCCATCTCCCCAAAACGCCCAAAAATTGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

188

Amino Acids

21.02

Weight (kDa)

9.83

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	288, 391
AcsI	RAATTY	4 cut(s)	11, 80, 350, 510
AcuI	CTGAAG	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	19, 72, 176, 217, 356, 439, 523
AluBI	AGCT	2 cut(s)	213, 220
AluI	AGCT	2 cut(s)	213, 220
AoxI	GGCC	3 cut(s)	244, 288, 391
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	4 cut(s)	11, 80, 350, 510
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	20
BalI	TGGCCA	2 cut(s)	290, 393
BbsI	GAAGAC	2 cut(s)	30, 121
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	4 cut(s)	299, 373, 456, 540
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	30, 121
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	3 cut(s)	246, 290, 393
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	246, 290, 393
BspANI	GGCC	3 cut(s)	246, 290, 393
BspLI	GGNNCC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	2 cut(s)	30, 121
BstXI	CCANNNNNNTGG	2 cut(s)	74, 389
BsuRI	GGCC	3 cut(s)	246, 290, 393
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	48, 183
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	2 cut(s)	51, 166
CviJI	RGCY	8 cut(s)	66, 205, 213, 220, 246, 254, 290, 393
CviKI_1	RGCY	8 cut(s)	66, 205, 213, 220, 246, 254, 290, 393
EaeI	YGGCCR	2 cut(s)	288, 391
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	54, 169
FaiI	YATR	3 cut(s)	34, 52, 167
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	50, 165
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	246, 290, 393
Hin1II	CATG	2 cut(s)	54, 169
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	170, 311
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	50, 169
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	54, 169
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	3 cut(s)	14, 115, 135
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	280
MboII	GAAGA	6 cut(s)	7, 30, 49, 121, 127, 137
MfeI	CAATTG	2 cut(s)	72, 306
MlsI	TGGCCA	2 cut(s)	290, 393
MluCI	AATT	9 cut(s)	11, 72, 80, 306, 350, 434, 510, 518, 553
MluNI	TGGCCA	2 cut(s)	290, 393
MnlI	CCTC	9 cut(s)	128, 143, 159, 172, 273, 339, 382, 423, 465
Mox20I	TGGCCA	2 cut(s)	290, 393
Mph1103I	ATGCAT	1 cut(s)	171
MscI	TGGCCA	2 cut(s)	290, 393
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	2 cut(s)	290, 393
MunI	CAATTG	2 cut(s)	72, 306
NlaIII	CATG	2 cut(s)	54, 169
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	387
SatI	GCNGC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	245
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	9 cut(s)	11, 72, 80, 306, 350, 434, 510, 518, 553
StyI	CCWWGG	1 cut(s)	249
TaiI	ACGT	1 cut(s)	283
TasI	AATT	9 cut(s)	11, 72, 80, 306, 350, 434, 510, 518, 553
TscAI	CASTG	2 cut(s)	48, 190
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	13, 184
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	48, 190
XapI	RAATTY	4 cut(s)	11, 80, 350, 510
XceI	RCATGY	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.