Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Reverse (-)

215995 .. 217898

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggctcgtgccttgctaggcatagagattgagccatacctctccacctcactccaagacttttggggcaagcgatggaatctcatggtctcaagtattctacgcccaacagtatacgaacccacccttaacatttccaaacatgtcgttgggccgaatgttgatgacggccaccgccaagcaaccatccttagccgagaaacctgcaaaaaccggcaaatcgagccctactggcaaatcgcaccacgccagaagtccattccaactcccacccacgatcgacgaagagaagaatcagatctgttaactcagccacgatccaagcagaagccaccaacttccatccctgagccaaaccccagccatagagccacgccactagccttcgttttcatcccctcaagccatggagcttcagttgaggatgcgtgttgttttcgatctagatctgaaatctatggtggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

155

Amino Acids

17.59

Weight (kDa)

9.15

Isoelectric Point (pI)

77.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	142
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	152, 169
AspS9I	GGNCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	6
BccI	CCATC	3 cut(s)	69, 194, 350
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	17, 380, 444
BfuAI	ACCTGC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	232
BglII	AGATCT	2 cut(s)	298, 446
BmgT120I	GGNCC	1 cut(s)	152
BmsI	GCATC	1 cut(s)	415
Bpu10I	CCTNAGC	2 cut(s)	191, 348
BpuEI	CTTGAG	2 cut(s)	76, 385
BsaBI	GATNNNNATC	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse118I	RCCGGY	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	4 cut(s)	186, 342, 393, 430
BseJI	GATNNNNATC	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	323, 339
BseNI	ACTGG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	154, 171
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	154, 171
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	5 cut(s)	277, 298, 317, 440, 446
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	154, 171
BspCNI	CTCAG	2 cut(s)	322, 340
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	277, 298, 317, 440, 446
BssNAI	GTATAC	1 cut(s)	115
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	191, 309, 348
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	4 cut(s)	186, 342, 393, 430
BstKTI	GATC	5 cut(s)	280, 301, 320, 443, 449
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	5 cut(s)	277, 298, 317, 440, 446
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 232
BstNSI	RCATGY	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	298, 446
BstYI	RGATCY	2 cut(s)	298, 446
BstZ17I	GTATAC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	154, 171
BtgI	CCRYGG	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	186, 342, 393, 430
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	3 cut(s)	85, 143, 407
DdeI	CTNAG	3 cut(s)	191, 309, 348
DpnI	GATC	5 cut(s)	279, 300, 319, 442, 448
DpnII	GATC	5 cut(s)	277, 298, 317, 440, 446
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	3 cut(s)	88, 146, 410
FaiI	YATR	8 cut(s)	23, 37, 86, 115, 144, 366, 408, 459
FatI	CATG	3 cut(s)	84, 142, 406
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	4 cut(s)	173, 329, 380, 437
FriOI	GRGCYC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	17, 380, 444
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	154, 171
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	3 cut(s)	88, 146, 410
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	2 cut(s)	79, 293
HpaI	GTTAAC	1 cut(s)	306
HpaII	CCGG	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	115, 306
Hpy188I	TCNGA	2 cut(s)	298, 451
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	2 cut(s)	115, 306
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 232
HpyF3I	CTNAG	3 cut(s)	191, 309, 348
Hsp92II	CATG	3 cut(s)	88, 146, 410
KspAI	GTTAAC	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	277, 298, 317, 440, 446
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	6 cut(s)	217, 217, 227, 263, 360, 373
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	17, 380, 444
MalI	GATC	5 cut(s)	279, 300, 319, 442, 448
MboI	GATC	5 cut(s)	277, 298, 317, 440, 446
MboII	GAAGA	2 cut(s)	297, 302
MflI	RGATCY	2 cut(s)	298, 446
MhlI	GDGCHC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	50, 58, 409, 415
MseI	TTAA	2 cut(s)	129, 305
MspI	CCGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	223, 232
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	277, 298, 317, 440, 446
NlaIII	CATG	3 cut(s)	88, 146, 410
NmeAIII	GCCGAG	1 cut(s)	221
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	79, 293
Ple19I	CGATCG	1 cut(s)	280
PscI	ACATGT	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	298, 446
PvuI	CGATCG	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	129, 305
Sau3AI	GATC	5 cut(s)	277, 298, 317, 440, 446
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	4 cut(s)	42, 50, 206, 415
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	91, 400
SmoI	CTYRAG	2 cut(s)	91, 400
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	3 cut(s)	17, 380, 444
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	222, 280, 439
TfiI	GAWTC	2 cut(s)	79, 293
Tru1I	TTAA	2 cut(s)	129, 305
Tru9I	TTAA	2 cut(s)	129, 305
TspDTI	ATGAA	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	3 cut(s)	17, 380, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.