Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

4124573 .. 4125709

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG030600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGGTGATACTAGCAACTTCTTTAAGGTATGGCGCTCTGTATTTTTCTGTCTATGTTATTGCAATGCCATTGGCAAATTAGTCCGTAAAGGTTGCATAAGACTTCTTTGTCTGCTTCCAATTGTGTGCCTCTTTCTCTATCTTCCTATCTACATTTCCTCTATACATCTTGTAGCCATCACATCCTTTTTCATTGCTTGGCTTGCAAACTTTAAGCTGTTGCTCTTTGCTTTCGATAAAGGACCTTTATCTTCTGAACCATCCATCACTCTTGGACGTTTTGTTGTTATTGCTTGCCTTCCTATCAAGGTCCAAAAGTCCCTCCCTCCAAATCAATTAGGCAAACCCAGAAAAATACAAAATGGAAAGAATTCATCTTCACCACAATCACATATTGATGACCAAACTAAAGGAAACAAAATCCATCAAAAGTCCAAAGAGGGTAACATATTGCATTCAAATTATGCAACTAAGGTTTTGCTTTTGGGCATTTTGTTACGTGCCTATGATTACATTAACTACATTCATCCCAATGCCTTATTACTTCTTTATTGTTTGCACATTTATCTGCTCCTTGAACTCATCCTAGCGGTGGTTGCATCCATGGCTCGTGCCTTGCTAGGCATAGAGCTTGAGCCACAATTTAATGAGCCATACCTCTCCACCTCACTCCAAGACTTTTGGGGCAAGCGATGGAATCTCATGGTCTCAAGTATTCTACGCCCAACAGTATACGAACCCACCCTTAACATTTCCAAACATGTCGTTGGTCGTAAGTGGGCCTCATTACCTGCCGTACTTGCAACATTTGGTGTATCGGCGTTGATGCATGAGCTCATTTTTTACCACATGGGCCGAATGCCGATAACGGGTGAAGTTACATGCTTCTTCACGCTCCACGGGATCTGCCTAGCGGTTGAGATCTTTTTCAACAAGGCACTAACAAATAGGTGGCAACTTCCGATGTTGATCTCTCGATTTATGACCATTGTATTCGTGATATCGACGTCCGTGTGGCTGTTTCTTCCGCAATTTCTTCGGATTGGGGTTGATGTTAGGGCGTTCGAAGAGTATGCTGCATTGGGAACATTTTTTAAGAATCTCATGAACATGACTGTTTTTAGGATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

378

Amino Acids

43.03

Weight (kDa)

9.47

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	213 - 299	1.1e-17	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	111
AatII	GACGTC	1 cut(s)	1013
Acc36I	ACCTGC	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	3 cut(s)	593, 917, 1031
AclWI	GGATC	1 cut(s)	914
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	1010
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	595, 872
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	462, 581, 934
AluBI	AGCT	4 cut(s)	220, 634, 838, 1134
AluI	AGCT	4 cut(s)	220, 634, 838, 1134
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	1 cut(s)	715
AlwI	GGATC	1 cut(s)	914
AoxI	GGCC	2 cut(s)	783, 856
ApeKI	GCWGC	1 cut(s)	1079
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	4 cut(s)	245, 313, 783, 856
AsuHPI	GGTGA	3 cut(s)	20, 375, 887
AsuII	TTCGAA	1 cut(s)	1068
AvaII	GGWCC	2 cut(s)	245, 313
BanII	GRGCYC	1 cut(s)	840
BauI	CACGAG	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	1066
BccI	CCATC	5 cut(s)	188, 271, 275, 435, 690
BceAI	ACGGC	1 cut(s)	782
BcgI	CGANNNNNNTGC	4 cut(s)	1022, 1056, 1058, 1092
BcoDI	GTCTC	1 cut(s)	715
BfaI	CTAG	5 cut(s)	15, 590, 623, 914, 1135
BfoI	RGCGCY	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	802
BglII	AGATCT	1 cut(s)	924
BisI	GCNGC	1 cut(s)	1080
BlsI	GCNGC	1 cut(s)	1081
Bme18I	GGWCC	2 cut(s)	245, 313
BmgT120I	GGNCC	4 cut(s)	245, 313, 783, 856
BmsI	GCATC	2 cut(s)	611, 819
Bpu14I	TTCGAA	1 cut(s)	1068
BpuEI	CTTGAG	2 cut(s)	656, 697
BsaAI	YACGTR	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	971
BsaHI	GRCGYC	1 cut(s)	1010
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	2 cut(s)	606, 901
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 872
Bse3DI	GCAATG	2 cut(s)	73, 195
Bse8I	GATNNNNATC	1 cut(s)	971
BseDI	CCNNGG	2 cut(s)	606, 901
BseGI	GGATG	5 cut(s)	185, 263, 529, 585, 602
BseJI	GATNNNNATC	1 cut(s)	971
BseLI	CCNNNNNNNGG	2 cut(s)	595, 872
BseMI	GCAATG	2 cut(s)	73, 195
BseXI	GCAGC	1 cut(s)	1066
BshFI	GGCC	2 cut(s)	785, 858
BsiHKAI	GWGCWC	1 cut(s)	840
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	595, 872
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	2 cut(s)	457, 867
BsnI	GGCC	2 cut(s)	785, 858
Bso31I	GGTCTC	1 cut(s)	715
Bsp119I	TTCGAA	1 cut(s)	1068
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	3 cut(s)	906, 924, 972
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	3 cut(s)	593, 917, 1031
BspANI	GGCC	2 cut(s)	785, 858
BspHI	TCATGA	1 cut(s)	1107
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	1 cut(s)	914
BspT104I	TTCGAA	1 cut(s)	1068
BspTNI	GGTCTC	1 cut(s)	715
BsrDI	GCAATG	2 cut(s)	73, 195
BssECI	CCNNGG	2 cut(s)	606, 901
BssMI	GATC	3 cut(s)	906, 924, 972
BssNAI	GTATAC	1 cut(s)	736
BssNI	GRCGYC	1 cut(s)	1010
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	736
Bst2BI	CACGAG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	733, 1120
Bst6I	CTCTTC	1 cut(s)	1065
BstACI	GRCGYC	1 cut(s)	1010
BstBAI	YACGTR	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	1068
BstC8I	GCNNGC	3 cut(s)	207, 298, 692
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	2 cut(s)	606, 901
BstF5I	GGATG	5 cut(s)	185, 263, 529, 585, 602
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	909, 927, 975
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	3 cut(s)	906, 924, 972
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 599, 608, 803
BstNSI	RCATGY	2 cut(s)	767, 888
BstV1I	GCAGC	1 cut(s)	1066
BstX2I	RGATCY	2 cut(s)	906, 924
BstYI	RGATCY	2 cut(s)	906, 924
BstZ17I	GTATAC	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	785, 858
BtgI	CCRYGG	2 cut(s)	606, 901
BtgZI	GCGATG	1 cut(s)	709
BtsCI	GGATG	5 cut(s)	185, 263, 529, 585, 602
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	207, 298, 692
CciI	TCATGA	1 cut(s)	1107
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	4 cut(s)	245, 313, 783, 856
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	8 cut(s)	607, 706, 764, 833, 853, 885, 1108, 1114
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	908, 926, 974
DpnII	GATC	3 cut(s)	906, 924, 972
DrdI	GACNNNNNNGTC	1 cut(s)	111
DseDI	GACNNNNNNGTC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	715
Eco32I	GATATC	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	245, 313
Eco53kI	GAGCTC	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	1005
EcoT14I	CCWWGG	1 cut(s)	606
EcoT22I	ATGCAT	1 cut(s)	834
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	8 cut(s)	610, 709, 767, 836, 856, 888, 1111, 1117
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	8 cut(s)	606, 705, 763, 832, 852, 884, 1107, 1113
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	1080
FokI	GGATG	5 cut(s)	172, 250, 516, 572, 589
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	1 cut(s)	1080
FspBI	CTAG	5 cut(s)	15, 590, 623, 914, 1135
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	1080
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	785, 858
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	1010
Hin1II	CATG	8 cut(s)	610, 709, 767, 836, 856, 888, 1111, 1117
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	700, 1102
HphI	GGTGA	3 cut(s)	20, 375, 887
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	3 cut(s)	259, 966, 1044
Hpy188III	TCNNGA	3 cut(s)	978, 1000, 1108
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	1 cut(s)	1012
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	2 cut(s)	733, 1120
HpyCH4IV	ACGT	3 cut(s)	280, 502, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 599, 608, 803
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	3 cut(s)	280, 502, 1010
Hsp92I	GRCGYC	1 cut(s)	1010
Hsp92II	CATG	8 cut(s)	610, 709, 767, 836, 856, 888, 1111, 1117
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	906, 924, 972
LmnI	GCTCC	2 cut(s)	579, 903
LpnPI	CCDG	2 cut(s)	364, 807
Lsp1109I	GCAGC	1 cut(s)	1066
LweI	GCATC	2 cut(s)	611, 819
MaeI	CTAG	5 cut(s)	15, 590, 623, 914, 1135
MaeII	ACGT	3 cut(s)	280, 502, 1010
MaeIII	GTNAC	3 cut(s)	446, 498, 880
MalI	GATC	3 cut(s)	908, 926, 974
MboI	GATC	3 cut(s)	906, 924, 972
MboII	GAAGA	7 cut(s)	137, 246, 372, 883, 1019, 1031, 1082
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	2 cut(s)	906, 924
MhlI	GDGCHC	1 cut(s)	840
MluCI	AATT	7 cut(s)	80, 123, 338, 373, 463, 644, 1034
MnlI	CCTC	8 cut(s)	143, 172, 335, 339, 436, 671, 679, 796
Mph1103I	ATGCAT	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	6 cut(s)	27, 216, 519, 648, 750, 1098
MslI	CAYNNNNRTG	3 cut(s)	399, 534, 1112
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	457, 867
MwoI	GCNNNNNNNGC	4 cut(s)	206, 599, 608, 803
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	3 cut(s)	906, 924, 972
NlaIII	CATG	8 cut(s)	610, 709, 767, 836, 856, 888, 1111, 1117
NsiI	ATGCAT	1 cut(s)	834
NspI	RCATGY	2 cut(s)	767, 888
NspV	TTCGAA	1 cut(s)	1068
PagI	TCATGA	1 cut(s)	1107
PciI	ACATGT	1 cut(s)	763
PctI	GAATGC	2 cut(s)	457, 867
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	700, 1102
PkrI	GCNGC	1 cut(s)	1081
Ppu21I	YACGTR	1 cut(s)	503
PpuMI	RGGWCCY	1 cut(s)	245
PscI	ACATGT	1 cut(s)	763
Psp124BI	GAGCTC	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	245
PspPI	GGNCC	4 cut(s)	245, 313, 783, 856
PspPPI	RGGWCCY	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	906, 924
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	3 cut(s)	399, 534, 1112
SacI	GAGCTC	1 cut(s)	840
SaqAI	TTAA	6 cut(s)	27, 216, 519, 648, 750, 1098
SatI	GCNGC	1 cut(s)	1080
Sau3AI	GATC	3 cut(s)	906, 924, 972
Sau96I	GGNCC	4 cut(s)	245, 313, 783, 856
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	611, 819
SfuI	TTCGAA	1 cut(s)	1068
SinI	GGWCC	2 cut(s)	245, 313
SmiMI	CAYNNNNRTG	3 cut(s)	399, 534, 1112
SmlI	CTYRAG	2 cut(s)	635, 712
SmoI	CTYRAG	2 cut(s)	635, 712
Sse9I	AATT	7 cut(s)	80, 123, 338, 373, 463, 644, 1034
SsiI	CCGC	3 cut(s)	593, 917, 1031
SspMI	CTAG	5 cut(s)	15, 590, 623, 914, 1135
SstI	GAGCTC	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	2 cut(s)	733, 1120
TaiI	ACGT	3 cut(s)	283, 505, 1013
TaqI	TCGA	4 cut(s)	237, 979, 1007, 1068
TasI	AATT	7 cut(s)	80, 123, 338, 373, 463, 644, 1034
TfiI	GAWTC	2 cut(s)	700, 1102
Tru1I	TTAA	6 cut(s)	27, 216, 519, 648, 750, 1098
Tru9I	TTAA	6 cut(s)	27, 216, 519, 648, 750, 1098
TseI	GCWGC	1 cut(s)	1079
TspDTI	ATGAA	4 cut(s)	184, 366, 518, 1124
TspGWI	ACGGA	2 cut(s)	77, 1003
VpaK11BI	GGWCC	2 cut(s)	245, 313
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	2 cut(s)	767, 888
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	5 cut(s)	15, 590, 623, 914, 1135
ZraI	GACGTC	1 cut(s)	1011
Zsp2I	ATGCAT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.