Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001304.1

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Reverse (-)

211127 .. 212248

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001304.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggaaggtgaatttggcaacttcattgaggtattaacttcaatatttgtttgcatattctattcctactcccttggcaaaatagtccccaaaggtaaaaccagactcctttgtgttctcccagttgtgtgtctcttcttgtacctccctcttcacctctcctctgtacatcttggaggtgccactgcttttttcatttcatggcttggcagcttcaagcttctgcttttcgcctttgacaaaggtcctttggcttcagacccatcaatctcgattggacgtttcatggccattgcttgcctcccaatcgatatccaagaaaacacacctccaaaacctcaaaatgcccaaattgaaaccaacccatctccatcaaaacctcatctgaatggccaaaatggggaaaccccacatcccagaaacaccaaaacaaaaaccccgaatcatgtaatcaagggcttccttttggccattctaataggggtcctttattatagcgagcatttccatccaaagctcatcttagtgcttcattgcctttacatatatcttctcctagagttcctcctagcaatggtaggagtcctggctcgagcccttttgggattggaactcaagccccacttcaacgagccctacctctccacatcgctacaagacttctggggcagaagatggaacctcatggccaccagtatcctacgcccggccgtatacgaacccgtcctcgacttctccacgcgcttcattggccgaaaatgggctccaattcctgctgtgatgggaagcttcgtagtgtccgggctcatgcacgagctgatttactactatcaggggcgcgtgaagcccacgtgggaggttacgttgttcttcattctgcaggggttgtgtttgacattggagatcgttttgaagaaggcgttgaggggcaggttccggttgccgactctggtctcggtggtgttgacagttgggtttgtggttgcgacttgcttctggctcttctttccgcagtttcttcggagcaaggctgacgttagaatgctcgaagagtatgttgcttttggtgcgtacatgaagaatgtggctcgaactttccaaaaatcgctgtctagctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

373

Amino Acids

42.13

Weight (kDa)

9.42

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	2 cut(s)	742, 840
AciI	CCGC	1 cut(s)	1010
AcoI	YGGCCR	6 cut(s)	288, 391, 468, 687, 708, 751
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	240
AcvI	CACGTG	1 cut(s)	852
AfaI	GTAC	3 cut(s)	143, 168, 1073
AfiI	CCNNNNNNNGG	4 cut(s)	400, 574, 706, 760
AgsI	TTSAA	5 cut(s)	42, 217, 356, 628, 913
AjnI	CCWGG	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	6 cut(s)	213, 220, 517, 789, 817, 1116
AluI	AGCT	6 cut(s)	213, 220, 517, 789, 817, 1116
Alw26I	GTCTC	2 cut(s)	137, 958
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	6 cut(s)	288, 391, 468, 687, 708, 751
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	744, 840
AspS9I	GGNCC	2 cut(s)	245, 484
AsuC2I	CCSGG	2 cut(s)	707, 802
AsuHPI	GGTGA	2 cut(s)	20, 146
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	2 cut(s)	245, 484
BalI	TGGCCA	4 cut(s)	290, 393, 470, 689
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	4 cut(s)	598, 636, 766, 807
BauI	CACGAG	1 cut(s)	812
BbrPI	CACGTG	1 cut(s)	852
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	6 cut(s)	271, 373, 379, 516, 669, 775
BceAI	ACGGC	1 cut(s)	695
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BciT130I	CCWGG	1 cut(s)	587
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	2 cut(s)	707, 802
BcoDI	GTCTC	2 cut(s)	137, 958
BfaI	CTAG	3 cut(s)	557, 569, 1113
BfmI	CTRYAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	921
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	587, 707, 802
Bme18I	GGWCC	2 cut(s)	245, 484
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	2 cut(s)	245, 484
BmiI	GGNNCC	5 cut(s)	181, 485, 680, 765, 935
BmrFI	CCNGG	3 cut(s)	587, 707, 802
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BoxI	GACNNNNGTC	2 cut(s)	243, 950
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	707, 802
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	852
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	936
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 574, 706, 760
Bse1I	ACTGG	2 cut(s)	122, 693
Bse3DI	GCAATG	3 cut(s)	291, 532, 579
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	412, 508
BseLI	CCNNNNNNNGG	4 cut(s)	400, 574, 706, 760
BseMI	GCAATG	3 cut(s)	291, 532, 579
BseNI	ACTGG	2 cut(s)	122, 693
BseRI	GAGGAG	1 cut(s)	151
BseX3I	CGGCCG	1 cut(s)	708
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	742, 840
Bsh1285I	CGRYCG	1 cut(s)	711
BshFI	GGCC	6 cut(s)	290, 393, 470, 689, 710, 753
BshNI	GGYRCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	707, 801, 937
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	400, 574, 706, 760
BsmAI	GTCTC	2 cut(s)	137, 958
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	1047
BsnI	GGCC	6 cut(s)	290, 393, 470, 689, 710, 753
Bso31I	GGTCTC	1 cut(s)	958
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	4 cut(s)	598, 636, 766, 807
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	903
BspACI	CCGC	1 cut(s)	1010
BspANI	GGCC	6 cut(s)	290, 393, 470, 689, 710, 753
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	742, 840
BspHI	TCATGA	1 cut(s)	1118
BspLI	GGNNCC	5 cut(s)	181, 485, 680, 765, 935
BspMAI	CTGCAG	1 cut(s)	882
BspMI	ACCTGC	1 cut(s)	921
BspQI	GCTCTTC	1 cut(s)	1007
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	3 cut(s)	291, 532, 579
BsrGI	TGTACA	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	122, 693
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	903
BssNAI	GTATAC	1 cut(s)	715
BssSI	CACGAG	1 cut(s)	812
BssT1I	CCWWGG	1 cut(s)	73
Bst1107I	GTATAC	1 cut(s)	715
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	970
Bst6I	CTCTTC	4 cut(s)	140, 156, 1007, 1044
BstAUI	TGTACA	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	298, 500
BstDEI	CTNAG	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	412, 508
BstFNI	CGCG	2 cut(s)	742, 840
BstHHI	GCGC	2 cut(s)	744, 840
BstKTI	GATC	1 cut(s)	906
BstMAI	GTCTC	2 cut(s)	137, 958
BstMBI	GATC	1 cut(s)	903
BstMCI	CGRYCG	1 cut(s)	711
BstMWI	GCNNNNNNNGC	3 cut(s)	750, 844, 1067
BstNI	CCWGG	1 cut(s)	587
BstPAI	GACNNNNGTC	2 cut(s)	243, 950
BstSCI	CCNGG	3 cut(s)	585, 705, 800
BstSFI	CTRYAG	1 cut(s)	878
BstUI	CGCG	2 cut(s)	742, 840
BstV1I	GCAGC	1 cut(s)	222
BstZ17I	GTATAC	1 cut(s)	715
BstZI	CGGCCG	1 cut(s)	708
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	6 cut(s)	290, 393, 470, 689, 710, 753
BsuTUI	ATCGAT	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	412, 508
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	2 cut(s)	298, 500
CciI	TCATGA	1 cut(s)	1118
CfoI	GCGC	2 cut(s)	744, 840
Cfr13I	GGNCC	2 cut(s)	245, 484
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	142, 167, 1072
CviAII	CATG	7 cut(s)	201, 286, 446, 685, 808, 1075, 1119
CviQI	GTAC	3 cut(s)	142, 167, 1072
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	1 cut(s)	905
DpnII	GATC	1 cut(s)	903
EaeI	YGGCCR	6 cut(s)	288, 391, 468, 687, 708, 751
EagI	CGGCCG	1 cut(s)	708
Eam1104I	CTCTTC	4 cut(s)	140, 156, 1007, 1044
EarI	CTCTTC	4 cut(s)	140, 156, 1007, 1044
EclXI	CGGCCG	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	4 cut(s)	598, 636, 766, 807
Eco31I	GGTCTC	1 cut(s)	958
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	245, 484
Eco52I	CGGCCG	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	240
Eco72I	CACGTG	1 cut(s)	852
Eco88I	CYCGRG	1 cut(s)	591
EcoO109I	RGGNCCY	2 cut(s)	245, 484
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	4 cut(s)	598, 636, 766, 807
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	7 cut(s)	204, 289, 449, 688, 811, 1078, 1122
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 608, 640
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	7 cut(s)	200, 285, 445, 684, 807, 1074, 1118
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	2 cut(s)	399, 495
FriOI	GRGCYC	4 cut(s)	598, 636, 766, 807
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	3 cut(s)	557, 569, 1113
GlaI	GCGC	2 cut(s)	743, 839
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	6 cut(s)	290, 393, 470, 689, 710, 753
HapII	CCGG	3 cut(s)	707, 801, 937
HhaI	GCGC	2 cut(s)	744, 840
Hin1II	CATG	7 cut(s)	204, 289, 449, 688, 811, 1078, 1122
Hin6I	GCGC	2 cut(s)	742, 838
HinP1I	GCGC	2 cut(s)	742, 838
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HindIII	AAGCTT	2 cut(s)	218, 787
HinfI	GANTC	4 cut(s)	105, 442, 582, 946
HpaII	CCGG	3 cut(s)	707, 801, 937
HphI	GGTGA	2 cut(s)	20, 146
Hpy166II	GTNNAC	2 cut(s)	715, 966
Hpy188I	TCNGA	3 cut(s)	259, 387, 1023
Hpy188III	TCNNGA	2 cut(s)	271, 1119
Hpy8I	GTNNAC	2 cut(s)	715, 966
HpyAV	CCTTC	1 cut(s)	910
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	4 cut(s)	280, 851, 863, 1035
HpyCH4V	TGCA	3 cut(s)	54, 811, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	750, 844, 1067
HpyF3I	CTNAG	1 cut(s)	523
HpySE526I	ACGT	4 cut(s)	280, 851, 863, 1035
Hsp92II	CATG	7 cut(s)	204, 289, 449, 688, 811, 1078, 1122
HspAI	GCGC	2 cut(s)	742, 838
Kzo9I	GATC	1 cut(s)	903
LguI	GCTCTTC	1 cut(s)	1007
LmnI	GCTCC	2 cut(s)	769, 1023
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	3 cut(s)	557, 569, 1113
MaeII	ACGT	4 cut(s)	280, 851, 863, 1035
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	1 cut(s)	905
MboI	GATC	1 cut(s)	903
MhlI	GDGCHC	4 cut(s)	598, 636, 766, 807
MlsI	TGGCCA	4 cut(s)	290, 393, 470, 689
MluCI	AATT	3 cut(s)	11, 351, 768
MluNI	TGGCCA	4 cut(s)	290, 393, 470, 689
MlyI	GAGTC	3 cut(s)	99, 591, 940
Mox20I	TGGCCA	4 cut(s)	290, 393, 470, 689
MscI	TGGCCA	4 cut(s)	290, 393, 470, 689
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	387, 524
Msp20I	TGGCCA	4 cut(s)	290, 393, 470, 689
MspI	CCGG	3 cut(s)	707, 801, 937
MspR9I	CCNGG	3 cut(s)	587, 707, 802
Mva1269I	GAATGC	1 cut(s)	1047
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	2 cut(s)	742, 840
MwoI	GCNNNNNNNGC	3 cut(s)	750, 844, 1067
NciI	CCSGG	2 cut(s)	707, 802
NdeII	GATC	1 cut(s)	903
NlaIII	CATG	7 cut(s)	204, 289, 449, 688, 811, 1078, 1122
NlaIV	GGNNCC	5 cut(s)	181, 485, 680, 765, 935
PaeR7I	CTCGAG	1 cut(s)	591
PagI	TCATGA	1 cut(s)	1118
PciSI	GCTCTTC	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	1047
PfeI	GAWTC	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	3 cut(s)	99, 590, 940
PmaCI	CACGTG	1 cut(s)	852
PmlI	CACGTG	1 cut(s)	852
PpsI	GAGTC	3 cut(s)	99, 590, 940
Ppu21I	YACGTR	1 cut(s)	852
PpuMI	RGGWCCY	2 cut(s)	245, 484
PshAI	GACNNNNGTC	2 cut(s)	243, 950
Psp5II	RGGWCCY	2 cut(s)	245, 484
Psp6I	CCWGG	1 cut(s)	585
PspCI	CACGTG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	5 cut(s)	181, 485, 680, 765, 935
PspPI	GGNCC	2 cut(s)	245, 484
PspPPI	RGGWCCY	2 cut(s)	245, 484
PspXI	VCTCGAGB	1 cut(s)	591
PstI	CTGCAG	1 cut(s)	882
RsaI	GTAC	3 cut(s)	143, 168, 1073
RsaNI	GTAC	3 cut(s)	142, 167, 1072
RseI	CAYNNNNRTG	2 cut(s)	387, 524
SapI	GCTCTTC	1 cut(s)	1007
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	903
Sau96I	GGNCC	2 cut(s)	245, 484
SchI	GAGTC	3 cut(s)	99, 591, 940
ScrFI	CCNGG	3 cut(s)	587, 707, 802
SduI	GDGCHC	4 cut(s)	598, 636, 766, 807
SfcI	CTRYAG	1 cut(s)	878
Sfr274I	CTCGAG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	245, 484
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	387, 524
SmlI	CTYRAG	2 cut(s)	591, 614
SmoI	CTYRAG	2 cut(s)	591, 614
Sse9I	AATT	3 cut(s)	11, 351, 768
SsiI	CCGC	1 cut(s)	1010
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	557, 569, 1113
StyD4I	CCNGG	3 cut(s)	585, 705, 800
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	4 cut(s)	283, 854, 866, 1038
TaqI	TCGA	6 cut(s)	272, 309, 592, 729, 1047, 1090
TasI	AATT	3 cut(s)	11, 351, 768
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	8 cut(s)	13, 184, 189, 274, 521, 736, 862, 1091
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	245, 484
XapI	RAATTY	1 cut(s)	11
XhoI	CTCGAG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	3 cut(s)	557, 569, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.