Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

6108833 .. 6110259

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTTTGCCATCACATCCTTTTTCATTGCTTGGCTTGCAAACTGTAAGCTGTTGCTCTTTGCTTTCGATAAAGGACCTTTATCTTCTGAACCATCCATCACTCTTGGACGTTTTGTTGTTATTGCTTGCCTTCCTATCAAGGTCCAAAAGTCCCTCCCTCCAAATCAATTAGGCAAACCCAGAAAAATACAAAATGGAAAGAATTCGTCTTCACCACAATCACATATTGATGACCAATCTAAAGGAAACAAAATCCATCAAAAGTCCAAAGAGGGTAACATATTGCATTCAAATTATGCAACTAAGGTTTTGCTTTTGGGCATTTTGTTACGTGCCTATGATTTCATTAACTACATTCATCCCAATGCCTTATTACTTCTTTATTGTTTGCACATTTATCTGCTCCTTGAACTCATCCTAGCGGTGGTTGCATCCATGGCTCGTGCCTTGCTAGGCGTAGAGATTGAGCCACAATTTAATGATCCATACCTCTCCACCTCACTCCAAATTTTTTGCGGCAAGCGATGGAATCTCATGGTCTCAAGTACTCTACGCCCAACAGCATACGAACCCACCCTTAACATTTCCAAACATGTCGTTGGTCGTAAGTGGGCCTCATTACCTGCCGTACTTGCAACATTTGGTGTATCGGCGTTGATGCATGAGCTCATTTTTTACCACATGGGCCGAATGCCGATAACGGGTGAAGTAACATGCTTCTTCACGCTCCACGGGATCTGCCTAGCGGTTGAGATCTTTTTCAACAAGGCACTAACAAATAGGTGGCAACTTCCGATGTTGATCTCTCGATTTATGACCATTGTATTCGTGATATCGACGTCCGTGTGGCTGTTTCTTCCGCAATTTCTTCGGATTGGGGTTGATGTTAGGGCGTTCGTGCTGCGTTGGGAACATTTTTTAAGAATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

310

Amino Acids

35.14

Weight (kDa)

9.69

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	156 - 242	4.2e-14	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	842
Acc36I	ACCTGC	1 cut(s)	631
AciI	CCGC	4 cut(s)	422, 516, 746, 860
AclWI	GGATC	2 cut(s)	476, 743
AcsI	RAATTY	2 cut(s)	202, 507
AcyI	GRCGYC	1 cut(s)	839
AfaI	GTAC	2 cut(s)	547, 630
AfiI	CCNNNNNNNGG	2 cut(s)	424, 701
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	3 cut(s)	291, 410, 763
AluBI	AGCT	2 cut(s)	49, 667
AluI	AGCT	2 cut(s)	49, 667
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	2 cut(s)	476, 743
AoxI	GGCC	2 cut(s)	612, 685
ApeKI	GCWGC	1 cut(s)	901
ApoI	RAATTY	2 cut(s)	202, 507
Asp700I	GAANNNNTTC	1 cut(s)	202
AspS9I	GGNCC	4 cut(s)	74, 142, 612, 685
AsuHPI	GGTGA	2 cut(s)	204, 716
AvaII	GGWCC	2 cut(s)	74, 142
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	888
BccI	CCATC	5 cut(s)	17, 100, 104, 264, 519
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	3 cut(s)	419, 452, 743
BfuAI	ACCTGC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	2 cut(s)	517, 902
BlsI	GCNGC	2 cut(s)	518, 903
BmcAI	AGTACT	1 cut(s)	547
Bme18I	GGWCC	2 cut(s)	74, 142
BmgT120I	GGNCC	4 cut(s)	74, 142, 612, 685
BmsI	GCATC	2 cut(s)	440, 648
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	800
BsaHI	GRCGYC	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	435, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 701
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	435, 730
BseGI	GGATG	5 cut(s)	14, 92, 358, 414, 431
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	2 cut(s)	424, 701
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	888
BshFI	GGCC	2 cut(s)	614, 687
BsiHKAI	GWGCWC	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	424, 701
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	2 cut(s)	286, 696
BsnI	GGCC	2 cut(s)	614, 687
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	4 cut(s)	481, 735, 753, 801
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	4 cut(s)	422, 516, 746, 860
BspANI	GGCC	2 cut(s)	614, 687
BspHI	TCATGA	1 cut(s)	929
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	476, 743
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	435, 730
BssMI	GATC	4 cut(s)	481, 735, 753, 801
BssNI	GRCGYC	1 cut(s)	839
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	839
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	36, 127, 521
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	2 cut(s)	435, 730
BstF5I	GGATG	5 cut(s)	14, 92, 358, 414, 431
BstKTI	GATC	4 cut(s)	484, 738, 756, 804
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	4 cut(s)	481, 735, 753, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 428, 437, 632
BstNSI	RCATGY	2 cut(s)	596, 717
BstV1I	GCAGC	1 cut(s)	888
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	735, 753
BstYI	RGATCY	2 cut(s)	735, 753
BsuRI	GGCC	2 cut(s)	614, 687
BtgI	CCRYGG	2 cut(s)	435, 730
BtgZI	GCGATG	1 cut(s)	538
BtsCI	GGATG	5 cut(s)	14, 92, 358, 414, 431
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	36, 127, 521
CciI	TCATGA	1 cut(s)	929
Cfr13I	GGNCC	4 cut(s)	74, 142, 612, 685
Csp6I	GTAC	2 cut(s)	546, 629
CviAII	CATG	7 cut(s)	436, 535, 593, 662, 682, 714, 930
CviJI	RGCY	8 cut(s)	34, 49, 440, 469, 614, 667, 687, 850
CviKI_1	RGCY	8 cut(s)	34, 49, 440, 469, 614, 667, 687, 850
CviQI	GTAC	2 cut(s)	546, 629
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	483, 737, 755, 803
DpnII	GATC	4 cut(s)	481, 735, 753, 801
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	669
Eco31I	GGTCTC	1 cut(s)	544
Eco32I	GATATC	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	74, 142
Eco53kI	GAGCTC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	834
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	7 cut(s)	439, 538, 596, 665, 685, 717, 933
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	7 cut(s)	435, 534, 592, 661, 681, 713, 929
Fnu4HI	GCNGC	2 cut(s)	517, 902
FokI	GGATG	4 cut(s)	79, 345, 401, 418
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	2 cut(s)	517, 902
FspBI	CTAG	3 cut(s)	419, 452, 743
GluI	GCNGC	2 cut(s)	517, 902
HaeIII	GGCC	2 cut(s)	614, 687
Hin1I	GRCGYC	1 cut(s)	839
Hin1II	CATG	7 cut(s)	439, 538, 596, 665, 685, 717, 933
HinfI	GANTC	2 cut(s)	529, 924
HphI	GGTGA	2 cut(s)	204, 716
Hpy188I	TCNGA	3 cut(s)	88, 795, 873
Hpy188III	TCNNGA	3 cut(s)	807, 829, 930
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	3 cut(s)	109, 331, 839
HpyCH4V	TGCA	7 cut(s)	38, 286, 299, 391, 431, 635, 661
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 428, 437, 632
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	3 cut(s)	109, 331, 839
Hsp92I	GRCGYC	1 cut(s)	839
Hsp92II	CATG	7 cut(s)	439, 538, 596, 665, 685, 717, 933
Kzo9I	GATC	4 cut(s)	481, 735, 753, 801
LmnI	GCTCC	2 cut(s)	408, 732
LpnPI	CCDG	2 cut(s)	193, 636
Lsp1109I	GCAGC	1 cut(s)	888
LweI	GCATC	2 cut(s)	440, 648
MaeI	CTAG	3 cut(s)	419, 452, 743
MaeII	ACGT	3 cut(s)	109, 331, 839
MaeIII	GTNAC	3 cut(s)	275, 327, 709
MalI	GATC	4 cut(s)	483, 737, 755, 803
MboI	GATC	4 cut(s)	481, 735, 753, 801
MboII	GAAGA	5 cut(s)	75, 201, 712, 848, 860
MflI	RGATCY	2 cut(s)	735, 753
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	6 cut(s)	167, 202, 292, 473, 507, 863
MnlI	CCTC	6 cut(s)	164, 168, 265, 500, 508, 625
Mph1103I	ATGCAT	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	4 cut(s)	348, 477, 579, 920
MslI	CAYNNNNRTG	2 cut(s)	228, 363
Mva1269I	GAATGC	2 cut(s)	286, 696
MwoI	GCNNNNNNNGC	4 cut(s)	35, 428, 437, 632
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	481, 735, 753, 801
NlaIII	CATG	7 cut(s)	439, 538, 596, 665, 685, 717, 933
NsiI	ATGCAT	1 cut(s)	663
NspI	RCATGY	2 cut(s)	596, 717
PagI	TCATGA	1 cut(s)	929
PciI	ACATGT	1 cut(s)	592
PctI	GAATGC	2 cut(s)	286, 696
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	529, 924
PkrI	GCNGC	2 cut(s)	518, 903
Ppu21I	YACGTR	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	74
PspPI	GGNCC	4 cut(s)	74, 142, 612, 685
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	735, 753
RsaI	GTAC	2 cut(s)	547, 630
RsaNI	GTAC	2 cut(s)	546, 629
RseI	CAYNNNNRTG	2 cut(s)	228, 363
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	4 cut(s)	348, 477, 579, 920
SatI	GCNGC	2 cut(s)	517, 902
Sau3AI	GATC	4 cut(s)	481, 735, 753, 801
Sau96I	GGNCC	4 cut(s)	74, 142, 612, 685
ScaI	AGTACT	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	2 cut(s)	440, 648
SinI	GGWCC	2 cut(s)	74, 142
SmiMI	CAYNNNNRTG	2 cut(s)	228, 363
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	6 cut(s)	167, 202, 292, 473, 507, 863
SsiI	CCGC	4 cut(s)	422, 516, 746, 860
SspMI	CTAG	3 cut(s)	419, 452, 743
SstI	GAGCTC	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	3 cut(s)	112, 334, 842
TaqI	TCGA	3 cut(s)	66, 808, 836
TasI	AATT	6 cut(s)	167, 202, 292, 473, 507, 863
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	529, 924
Tru1I	TTAA	4 cut(s)	348, 477, 579, 920
Tru9I	TTAA	4 cut(s)	348, 477, 579, 920
TseI	GCWGC	1 cut(s)	901
TspDTI	ATGAA	3 cut(s)	13, 334, 347
TspGWI	ACGGA	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	74, 142
XapI	RAATTY	2 cut(s)	202, 507
XceI	RCATGY	2 cut(s)	596, 717
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	3 cut(s)	419, 452, 743
ZraI	GACGTC	1 cut(s)	840
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.