Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

4960099 .. 4961327

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGTCATCAACTCAAGTGCCTTTTCATCAAAGAAATGGAAGGTGAATTTGGCAACTTCGTTGAGGTATTAACTTCAATATTTGTTTGCATATTCTATTCCTACTCCCTTGGCAAAATAGTCCCCAAAGGTAAAACCAGACTCCTTTGTGTTCTCCCAGTTGTGTGTTCTTCTTGTGCTACTGCTTTTTTCATTTCATGGCTTGGCAGCTTCAAGCTTCTGCTTTTCGCCTTTGACAAAGGTCCTTTGGCTTCAGACCCATCAATCTCGATTGGACGTTTCATGGCCATTGCTTGCCTCCCAATCGAAATCCAAGAAAACCCACCTCCAAAACCTGAAAATGCCCAAATTAAAACCAACCCATCTCCACCAAAACCCCATCTGAATGGCCAAAATGGGAAAAACCAACATCCCAGAAGCACCAAATCAAGGTCCCTGAATCATGTAATCAAGGGCTTCCTTTTGGCCATTCTAATAGGGGTCCTTTATTATAGTGAGCATTTCCATCCAAAGCTCATCTTAGTCCTTCATTGTCTTTACATATATCTCCTCCTAGAGTTCCTCCTAGCAATGGTAGGAGTCCTGGCTCGAGCCCTTTTGGGATTGGAACTCAAGCCCCACTTCAACGAGCCCTACCTCTCCACATCGCTACAAGACTTCTGGGGCAGAAGATGGAACCTCATGGCCACCAGTATCCTACGCCCGGCCGTATACGAACCCGTCCTCGACTTCTCCACGCGCTTCATTGGCCGGAAATGGGCTCCACTCCCTGCTGTGATGGGAAGCTTCGTAGTGTCCGGGCTCATGCACGAGCTGATTTACTACTATCAGGGGCGCGTGAAGCCCACGTGGGAGGTTACGTTGTTCTTCATGCTGCAGGGGTTGTGTTTGACATTGGAGATCGTTTTGAAGAAGGCGTTGAGGGGCAGGTTCCGGTTGCCGACGCTGGTCTCGGTGGTGTTGACAGTTGGGTTTGTGGTTGCGACTTGCTTCTGGCTCTTCTTTCCGCAGTTTCTTCGGAGCAAGGCTGACGTTAGAATGCTCGAAGAGTATGTTGCTTTTGGTGCGTACATGAAGAATGTGGCTCGAACTTTCCAAAAATCGCTGCCTAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

372

Amino Acids

42.19

Weight (kDa)

9.54

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	205 - 291	4e-18	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	918
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	2 cut(s)	739, 837
AciI	CCGC	1 cut(s)	1007
AcoI	YGGCCR	6 cut(s)	285, 388, 465, 684, 705, 748
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	1070
AfiI	CCNNNNNNNGG	4 cut(s)	429, 571, 703, 757
AgsI	TTSAA	4 cut(s)	78, 214, 625, 910
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	6 cut(s)	210, 217, 514, 786, 814, 1113
AluI	AGCT	6 cut(s)	210, 217, 514, 786, 814, 1113
Alw26I	GTCTC	1 cut(s)	955
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	6 cut(s)	285, 388, 465, 684, 705, 748
ApeKI	GCWGC	3 cut(s)	207, 874, 1105
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	741, 837
AspS9I	GGNCC	3 cut(s)	242, 432, 481
AsuC2I	CCSGG	2 cut(s)	704, 799
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	3 cut(s)	242, 432, 481
BalI	TGGCCA	4 cut(s)	287, 390, 467, 686
BanII	GRGCYC	4 cut(s)	595, 633, 763, 804
BauI	CACGAG	1 cut(s)	809
BbrPI	CACGTG	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	219, 861, 1092
BccI	CCATC	6 cut(s)	268, 370, 387, 513, 666, 772
BceAI	ACGGC	1 cut(s)	692
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	704
BcnI	CCSGG	2 cut(s)	704, 799
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	3 cut(s)	554, 566, 1110
BfmI	CTRYAG	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	3 cut(s)	208, 875, 1106
BlsI	GCNGC	3 cut(s)	209, 876, 1107
Bme1390I	CCNGG	3 cut(s)	584, 704, 799
Bme18I	GGWCC	3 cut(s)	242, 432, 481
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	3 cut(s)	242, 432, 481
BmiI	GGNNCC	5 cut(s)	434, 482, 677, 762, 932
BmrFI	CCNGG	3 cut(s)	584, 704, 799
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BoxI	GACNNNNGTC	2 cut(s)	240, 947
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	704, 799
BsaAI	YACGTR	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	933
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	4 cut(s)	429, 571, 703, 757
Bse1I	ACTGG	2 cut(s)	158, 690
Bse3DI	GCAATG	2 cut(s)	288, 576
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	409, 505
BseLI	CCNNNNNNNGG	4 cut(s)	429, 571, 703, 757
BseMI	GCAATG	2 cut(s)	288, 576
BseNI	ACTGG	2 cut(s)	158, 690
BseRI	GAGGAG	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	3 cut(s)	219, 861, 1092
Bsh1236I	CGCG	2 cut(s)	739, 837
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	6 cut(s)	287, 390, 467, 686, 707, 750
BsiEI	CGRYCG	1 cut(s)	708
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	704, 751, 798, 934
BslFI	GGGAC	2 cut(s)	107, 418
BslI	CCNNNNNNNGG	4 cut(s)	429, 571, 703, 757
BsmAI	GTCTC	1 cut(s)	955
BsmFI	GGGAC	2 cut(s)	107, 418
BsmI	GAATGC	1 cut(s)	1044
BsnI	GGCC	6 cut(s)	287, 390, 467, 686, 707, 750
Bso31I	GGTCTC	1 cut(s)	955
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	4 cut(s)	595, 633, 763, 804
Bsp143I	GATC	1 cut(s)	900
BspACI	CCGC	1 cut(s)	1007
BspANI	GGCC	6 cut(s)	287, 390, 467, 686, 707, 750
BspFNI	CGCG	2 cut(s)	739, 837
BspHI	TCATGA	1 cut(s)	1115
BspLI	GGNNCC	5 cut(s)	434, 482, 677, 762, 932
BspMAI	CTGCAG	1 cut(s)	879
BspMI	ACCTGC	1 cut(s)	918
BspQI	GCTCTTC	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	288, 576
BsrI	ACTGG	2 cut(s)	158, 690
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	900
BssNAI	GTATAC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	967
Bst6I	CTCTTC	2 cut(s)	1004, 1041
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	409, 505
BstFNI	CGCG	2 cut(s)	739, 837
BstHHI	GCGC	2 cut(s)	741, 837
BstKTI	GATC	1 cut(s)	903
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	1 cut(s)	900
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	3 cut(s)	747, 841, 1064
BstNI	CCWGG	1 cut(s)	584
BstPAI	GACNNNNGTC	2 cut(s)	240, 947
BstSCI	CCNGG	3 cut(s)	582, 702, 797
BstSFI	CTRYAG	1 cut(s)	875
BstUI	CGCG	2 cut(s)	739, 837
BstV1I	GCAGC	3 cut(s)	219, 861, 1092
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstZ17I	GTATAC	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	6 cut(s)	287, 390, 467, 686, 707, 750
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	409, 505
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	1115
CfoI	GCGC	2 cut(s)	741, 837
Cfr13I	GGNCC	3 cut(s)	242, 432, 481
CseI	GACGC	1 cut(s)	952
Csp6I	GTAC	1 cut(s)	1069
CviAII	CATG	8 cut(s)	198, 283, 443, 682, 805, 871, 1072, 1116
CviQI	GTAC	1 cut(s)	1069
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	1 cut(s)	902
DpnII	GATC	1 cut(s)	900
EaeI	YGGCCR	6 cut(s)	285, 388, 465, 684, 705, 748
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	1004, 1041
EarI	CTCTTC	2 cut(s)	1004, 1041
EclXI	CGGCCG	1 cut(s)	705
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	4 cut(s)	595, 633, 763, 804
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	242, 432, 481
Eco52I	CGGCCG	1 cut(s)	705
Eco57I	CTGAAG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	588
EcoO109I	RGGNCCY	3 cut(s)	242, 432, 481
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	4 cut(s)	595, 633, 763, 804
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	8 cut(s)	201, 286, 446, 685, 808, 874, 1075, 1119
FalI	AAGNNNNNCTT	4 cut(s)	503, 535, 605, 637
FaqI	GGGAC	2 cut(s)	107, 418
FatI	CATG	8 cut(s)	197, 282, 442, 681, 804, 870, 1071, 1115
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	3 cut(s)	208, 875, 1106
FokI	GGATG	2 cut(s)	396, 492
FriOI	GRGCYC	4 cut(s)	595, 633, 763, 804
Fsp4HI	GCNGC	3 cut(s)	208, 875, 1106
FspBI	CTAG	3 cut(s)	554, 566, 1110
GlaI	GCGC	2 cut(s)	740, 836
GluI	GCNGC	3 cut(s)	208, 875, 1106
HaeIII	GGCC	6 cut(s)	287, 390, 467, 686, 707, 750
HapII	CCGG	4 cut(s)	704, 751, 798, 934
HgaI	GACGC	1 cut(s)	952
HhaI	GCGC	2 cut(s)	741, 837
Hin1II	CATG	8 cut(s)	201, 286, 446, 685, 808, 874, 1075, 1119
Hin6I	GCGC	2 cut(s)	739, 835
HinP1I	GCGC	2 cut(s)	739, 835
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	2 cut(s)	215, 784
HinfI	GANTC	4 cut(s)	4, 141, 439, 579
HpaII	CCGG	4 cut(s)	704, 751, 798, 934
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	712, 963
Hpy188I	TCNGA	3 cut(s)	256, 384, 1020
Hpy188III	TCNNGA	2 cut(s)	268, 1116
Hpy8I	GTNNAC	2 cut(s)	712, 963
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	3 cut(s)	35, 536, 907
HpyCH4III	ACNGT	1 cut(s)	967
HpyCH4IV	ACGT	4 cut(s)	277, 848, 860, 1032
HpyCH4V	TGCA	3 cut(s)	90, 808, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	747, 841, 1064
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	4 cut(s)	277, 848, 860, 1032
Hsp92II	CATG	8 cut(s)	201, 286, 446, 685, 808, 874, 1075, 1119
HspAI	GCGC	2 cut(s)	739, 835
Kzo9I	GATC	1 cut(s)	900
LguI	GCTCTTC	1 cut(s)	1004
LmnI	GCTCC	2 cut(s)	766, 1020
Lsp1109I	GCAGC	3 cut(s)	219, 861, 1092
MaeI	CTAG	3 cut(s)	554, 566, 1110
MaeII	ACGT	4 cut(s)	277, 848, 860, 1032
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	1 cut(s)	902
MboI	GATC	1 cut(s)	900
MboII	GAAGA	8 cut(s)	162, 681, 859, 922, 991, 1007, 1058, 1087
MhlI	GDGCHC	4 cut(s)	595, 633, 763, 804
MlsI	TGGCCA	4 cut(s)	287, 390, 467, 686
MluCI	AATT	2 cut(s)	47, 348
MluNI	TGGCCA	4 cut(s)	287, 390, 467, 686
MlyI	GAGTC	3 cut(s)	13, 135, 588
Mox20I	TGGCCA	4 cut(s)	287, 390, 467, 686
MscI	TGGCCA	4 cut(s)	287, 390, 467, 686
MseI	TTAA	2 cut(s)	71, 351
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	4 cut(s)	287, 390, 467, 686
MspI	CCGG	4 cut(s)	704, 751, 798, 934
MspR9I	CCNGG	3 cut(s)	584, 704, 799
Mva1269I	GAATGC	1 cut(s)	1044
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	2 cut(s)	739, 837
MwoI	GCNNNNNNNGC	3 cut(s)	747, 841, 1064
NciI	CCSGG	2 cut(s)	704, 799
NdeII	GATC	1 cut(s)	900
NlaIII	CATG	8 cut(s)	201, 286, 446, 685, 808, 874, 1075, 1119
NlaIV	GGNNCC	5 cut(s)	434, 482, 677, 762, 932
PaeR7I	CTCGAG	1 cut(s)	588
PagI	TCATGA	1 cut(s)	1115
PciSI	GCTCTTC	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	1044
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	209, 876, 1107
PleI	GAGTC	3 cut(s)	12, 135, 587
PmaCI	CACGTG	1 cut(s)	849
PmlI	CACGTG	1 cut(s)	849
PpsI	GAGTC	3 cut(s)	12, 135, 587
Ppu21I	YACGTR	1 cut(s)	849
PpuMI	RGGWCCY	3 cut(s)	242, 432, 481
PshAI	GACNNNNGTC	2 cut(s)	240, 947
Psp5II	RGGWCCY	3 cut(s)	242, 432, 481
Psp6I	CCWGG	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	5 cut(s)	434, 482, 677, 762, 932
PspPI	GGNCC	3 cut(s)	242, 432, 481
PspPPI	RGGWCCY	3 cut(s)	242, 432, 481
PspXI	VCTCGAGB	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	879
RsaI	GTAC	1 cut(s)	1070
RsaNI	GTAC	1 cut(s)	1069
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	1004
SaqAI	TTAA	2 cut(s)	71, 351
SatI	GCNGC	3 cut(s)	208, 875, 1106
Sau3AI	GATC	1 cut(s)	900
Sau96I	GGNCC	3 cut(s)	242, 432, 481
SchI	GAGTC	3 cut(s)	13, 135, 588
ScrFI	CCNGG	3 cut(s)	584, 704, 799
SduI	GDGCHC	4 cut(s)	595, 633, 763, 804
SfcI	CTRYAG	1 cut(s)	875
Sfr274I	CTCGAG	1 cut(s)	588
SinI	GGWCC	3 cut(s)	242, 432, 481
SlaI	CTCGAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	14, 588, 611
SmoI	CTYRAG	3 cut(s)	14, 588, 611
Sse9I	AATT	2 cut(s)	47, 348
SsiI	CCGC	1 cut(s)	1007
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	3 cut(s)	554, 566, 1110
StyD4I	CCNGG	3 cut(s)	582, 702, 797
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	967
TaiI	ACGT	4 cut(s)	280, 851, 863, 1035
TaqI	TCGA	6 cut(s)	269, 306, 589, 726, 1044, 1087
TasI	AATT	2 cut(s)	47, 348
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	2 cut(s)	71, 351
Tru9I	TTAA	2 cut(s)	71, 351
TseI	GCWGC	3 cut(s)	207, 874, 1105
TspDTI	ATGAA	8 cut(s)	16, 181, 186, 271, 518, 733, 859, 1088
VpaK11BI	GGWCC	3 cut(s)	242, 432, 481
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	3 cut(s)	554, 566, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.