Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

55857441 .. 55858154

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0390800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATGTTGTTGAAATTCCTAGCATTAATCCTCCAGTACGCATATCTTCAGTCCCTCCAAGCTCCCTGGTATGGTGTAAGAATCCTAGCTTGGCCACAAAATGGGGATCAGAAGCTCAATGCAGAGGTGGTTGAGAGAAGTGGGCTTGGGATATGGGCCAGAACTTGGGCCTGGACCGGAGATGACCCGGTGGTGGTGGTGGTGGTGGTGGTGAAGGGGGAAGACATTGCTGTGAAGATCAAAGAGCTGATGCAGAGTGAAGAGCTGAGAGTGAAGGCTTTGAAGATTGGAGAAGAGGCTAAAAGGGTTGCTGGGTGCCGTGAGAAAATTTTCAAGGGACTGATTGAGGAGTGGAGCAAGGATAAAATGGATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

125

Amino Acids

14.25

Weight (kDa)

7.78

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccB7I	CCANNNNNTGG	2 cut(s)	101, 165
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	14, 327
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	71, 101, 165, 193
AgsI	TTSAA	3 cut(s)	13, 283, 334
AjnI	CCWGG	2 cut(s)	65, 170
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	5 cut(s)	62, 89, 115, 247, 265
AluI	AGCT	5 cut(s)	62, 89, 115, 247, 265
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	3 cut(s)	92, 156, 168
ApoI	RAATTY	2 cut(s)	14, 327
AseI	ATTAAT	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	156, 168, 174
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	2 cut(s)	67, 172
BciVI	GTATCC	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	2 cut(s)	20, 86
BfuI	GTATCC	1 cut(s)	364
Bme1390I	CCNGG	3 cut(s)	67, 172, 188
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	156, 168, 174
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	67, 172, 188
BmsI	GCATC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 101, 165, 193
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	67, 172
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	4 cut(s)	71, 101, 165, 193
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	3 cut(s)	94, 158, 170
BshNI	GGYRCC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	177, 188
BslFI	GGGAC	2 cut(s)	37, 351
BslI	CCNNNNNNNGG	4 cut(s)	71, 101, 165, 193
BsmFI	GGGAC	2 cut(s)	37, 351
BsnI	GGCC	3 cut(s)	94, 158, 170
Bsp143I	GATC	2 cut(s)	106, 237
BspANI	GGCC	3 cut(s)	94, 158, 170
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	106, 237
Bst2UI	CCWGG	2 cut(s)	67, 172
Bst6I	CTCTTC	2 cut(s)	255, 288
BstDEI	CTNAG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	109, 240
BstMBI	GATC	2 cut(s)	106, 237
BstNI	CCWGG	2 cut(s)	67, 172
BstSCI	CCNGG	3 cut(s)	65, 170, 186
BstV2I	GAAGAC	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	94, 158, 170
Cfr13I	GGNCC	3 cut(s)	156, 168, 174
Csp6I	GTAC	1 cut(s)	37
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	2 cut(s)	108, 239
DpnII	GATC	2 cut(s)	106, 237
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	255, 288
EarI	CTCTTC	2 cut(s)	255, 288
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	65, 170
FaiI	YATR	3 cut(s)	43, 72, 154
FaqI	GGGAC	2 cut(s)	37, 351
FspBI	CTAG	2 cut(s)	20, 86
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	94, 158, 170
HapII	CCGG	2 cut(s)	177, 188
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	177, 188
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	208, 268
HpyCH4V	TGCA	2 cut(s)	122, 253
HpyF3I	CTNAG	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	106, 237
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	67, 354
LpnPI	CCDG	9 cut(s)	47, 52, 79, 157, 172, 184, 190, 201, 297
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	20, 86
MalI	GATC	2 cut(s)	108, 239
MboI	GATC	2 cut(s)	106, 237
MboII	GAAGA	6 cut(s)	38, 233, 247, 272, 295, 305
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	2 cut(s)	14, 327
MluNI	TGGCCA	1 cut(s)	94
MnlI	CCTC	5 cut(s)	41, 65, 118, 289, 340
Mox20I	TGGCCA	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	94
MspI	CCGG	2 cut(s)	177, 188
MspR9I	CCNGG	3 cut(s)	67, 172, 188
MvaI	CCWGG	2 cut(s)	67, 172
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	106, 237
NlaIV	GGNNCC	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	2 cut(s)	101, 165
PshBI	ATTAAT	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	65, 170
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	65, 170
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	3 cut(s)	156, 168, 174
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	106, 237
Sau96I	GGNCC	3 cut(s)	156, 168, 174
ScrFI	CCNGG	3 cut(s)	67, 172, 188
SetI	ASST	6 cut(s)	64, 91, 117, 129, 249, 267
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	14, 327
SspMI	CTAG	2 cut(s)	20, 86
StyD4I	CCNGG	3 cut(s)	65, 170, 186
TasI	AATT	2 cut(s)	14, 327
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
Van91I	CCANNNNNTGG	2 cut(s)	101, 165
VpaK11BI	GGWCC	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	2 cut(s)	14, 327
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	20, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.