Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Reverse (-)

63032823 .. 63033377

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTCGTGCCTTGCTAGGATTAGAGATTGAGCGACAATTTAATGAGCCATACCTCTTCACCTCTCTCCAAGATTTTTGGGGTAAGCGATGGAATCTCATGGTCTCGAGTATTCTACGCCCCACCGTATACGAACCCACCCTTAACACTTCCAAACATGTCGTCGGTCGTAAGTGGGCTTCATTACCTGCCGTGGCAACTTCCGATGTTGATCTCTCGATTTATGACCTTGTATTCGTGATATCGACGTCCGTGTGGCTGCTTCTTCCGCAATTTCTTCGGATTGGGGTTGATGTTGGGGCGTTCGAGGAGTATGCTGCATTGGGAGCATTTTTTAAGAATCTCATGAACATGACTGTTTTTAGGGCTAGCTATGGGGGTGATGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

131

Amino Acids

14.69

Weight (kDa)

5.74

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	12 - 60	6.7e-08	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	157
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	259, 317
ArsI	GACNNNNNNTTYG	4 cut(s)	147, 179, 218, 250
AsuHPI	GGTGA	2 cut(s)	52, 392
AsuNHI	GCTAGC	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	246, 304
BccI	CCATC	2 cut(s)	84, 377
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 296, 330
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	17, 369
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	260, 318
BlsI	GCNGC	2 cut(s)	261, 319
BmeT110I	CYCGRG	1 cut(s)	106
BmtI	GCTAGC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	246, 304
Bsh1285I	CGRYCG	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	211
BssNAI	GTATAC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	127, 358
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 326
BstNSI	RCATGY	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	246, 304
BstZ17I	GTATAC	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	370
CciI	TCATGA	1 cut(s)	345
CviAII	CATG	4 cut(s)	100, 158, 346, 352
CviJI	RGCY	6 cut(s)	5, 49, 179, 259, 368, 372
CviKI_1	RGCY	6 cut(s)	5, 49, 179, 259, 368, 372
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	243
FaeI	CATG	4 cut(s)	103, 161, 349, 355
FaiI	YATR	9 cut(s)	52, 101, 130, 159, 225, 315, 347, 353, 375
FatI	CATG	4 cut(s)	99, 157, 345, 351
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	260, 318
Fsp4HI	GCNGC	2 cut(s)	260, 318
FspBI	CTAG	2 cut(s)	17, 369
GluI	GCNGC	2 cut(s)	260, 318
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	103, 161, 349, 355
HinfI	GANTC	2 cut(s)	94, 340
HphI	GGTGA	2 cut(s)	52, 392
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	205, 282
Hpy188III	TCNNGA	4 cut(s)	106, 217, 238, 346
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	167, 250
HpyCH4III	ACNGT	2 cut(s)	127, 358
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 326
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	103, 161, 349, 355
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	1 cut(s)	201
Lsp1109I	GCAGC	2 cut(s)	246, 304
MaeI	CTAG	2 cut(s)	17, 369
MaeII	ACGT	1 cut(s)	248
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	49, 257, 269
MluCI	AATT	2 cut(s)	38, 272
MnlI	CCTC	3 cut(s)	65, 73, 301
MseI	TTAA	3 cut(s)	42, 144, 336
MslI	CAYNNNNRTG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	268, 326
NdeII	GATC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	4 cut(s)	103, 161, 349, 355
NspI	RCATGY	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	106
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	94, 340
PkrI	GCNGC	2 cut(s)	261, 319
PscI	ACATGT	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	42, 144, 336
SatI	GCNGC	2 cut(s)	260, 318
Sau3AI	GATC	1 cut(s)	211
SetI	ASST	6 cut(s)	57, 65, 190, 231, 251, 374
Sfr274I	CTCGAG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	38, 272
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	17, 369
TaaI	ACNGT	2 cut(s)	127, 358
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	4 cut(s)	107, 218, 245, 306
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	38, 272
TfiI	GAWTC	2 cut(s)	94, 340
Tru1I	TTAA	3 cut(s)	42, 144, 336
Tru9I	TTAA	3 cut(s)	42, 144, 336
TseI	GCWGC	2 cut(s)	259, 317
TspDTI	ATGAA	2 cut(s)	171, 362
TspGWI	ACGGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	17, 369
ZraI	GACGTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.