Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

4132979 .. 4134587

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCCATTGCTTGTCTCCCAATCGAAATCCAAGAAAACCCACCTCCAAAACCTGAAAATGCCCAAATTAAAACCAACCCATCTCCACCAAAACCCCATCTGAATGGCCAAAATGGGAAAAACCAACATCCCAGAAGCACCAAATCAAGGTCCCTGAATCATGTAATCAAGGGCTTCCTTTTGGCCATTCTAATAGGGGTCCTTTATTATAGTGAGCATTTCCATCCAAAGCTCATCTTAGTCCTTCATTGTCTTTACATATATCTCCTCCTAGAGTTCCTCCTAGCAATGGTAGGAGTCCTGGCTCGAGCCCTTTTGGGATTGGAACTCAAGCCCCACTTCAACGAGCCCTACCTCTCCACATCGCTACAAGACTTCTGGGGCAGAAGATGGAACCTCATGGCCACCAGTATCCTACGCCCGGCCGTATACGAACCCGTCCTCGACTTCTCCACGCGCTTCATTGGCCGGAAATGGGCTCCACTCCCTGCTGTAATGGGAAGCTTTGTAGTGTCCGGGCTCATGCACGAGCTGATTTACTACTACCAGGGGCGCGTGAAGCCCACGTGGGAGGTTACGTGTTTCTTCGTTCTGCAGGGGTTGTGTTTGACACTGGAGATCGTTTTGAAGAAGGCGTTGAGGAGCAGGTTCCGGTGGTTTCCGACGCCGGTCTCGGTGGTGTTGACAGTTGGGTTTGTGGTTGCGACTTGCTTCTGGCTCTTCTTTCCGCAGTTTCTTCGGAGCAAGGCTGATGTTAGAATGCTCGAAGAGTATGTTGCTTTTGGTGCGTACATGAAGAATGTGGCTCGAACTTTCCAAAAATCGTTGTCTGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

279

Amino Acids

31.92

Weight (kDa)

9.71

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	111 - 197	2.2e-18	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	2 cut(s)	457, 555
AciI	CCGC	1 cut(s)	728
AcoI	YGGCCR	6 cut(s)	3, 106, 183, 402, 423, 466
AcvI	CACGTG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	4 cut(s)	147, 289, 421, 475
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	343, 628
AjnI	CCWGG	2 cut(s)	300, 546
AluBI	AGCT	3 cut(s)	232, 504, 532
AluI	AGCT	3 cut(s)	232, 504, 532
Alw26I	GTCTC	2 cut(s)	20, 676
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	6 cut(s)	3, 106, 183, 402, 423, 466
AspLEI	GCGC	2 cut(s)	459, 555
AspS9I	GGNCC	2 cut(s)	150, 199
AsuC2I	CCSGG	2 cut(s)	422, 517
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	150, 199
BalI	TGGCCA	4 cut(s)	5, 108, 185, 404
BanII	GRGCYC	4 cut(s)	313, 351, 481, 522
BauI	CACGAG	1 cut(s)	527
BbrPI	CACGTG	1 cut(s)	567
BccI	CCATC	4 cut(s)	88, 105, 231, 384
BceAI	ACGGC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	2 cut(s)	302, 548
BciVI	GTATCC	1 cut(s)	422
BcnI	CCSGG	2 cut(s)	422, 517
BcoDI	GTCTC	2 cut(s)	20, 676
BfaI	CTAG	2 cut(s)	272, 284
BfmI	CTRYAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	422
Bme1390I	CCNGG	4 cut(s)	302, 422, 517, 548
Bme18I	GGWCC	2 cut(s)	150, 199
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	150, 199
BmiI	GGNNCC	5 cut(s)	152, 200, 395, 480, 650
BmrFI	CCNGG	4 cut(s)	302, 422, 517, 548
BoxI	GACNNNNGTC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	422, 517
BsaAI	YACGTR	2 cut(s)	567, 579
BsaHI	GRCGYC	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	651
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 289, 421, 475
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	408, 618
Bse3DI	GCAATG	2 cut(s)	6, 294
BseBI	CCWGG	2 cut(s)	302, 548
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	127, 223
BseLI	CCNNNNNNNGG	4 cut(s)	147, 289, 421, 475
BseMI	GCAATG	2 cut(s)	6, 294
BseNI	ACTGG	2 cut(s)	408, 618
BseRI	GAGGAG	2 cut(s)	257, 655
BseX3I	CGGCCG	1 cut(s)	423
Bsh1236I	CGCG	2 cut(s)	457, 555
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	5, 108, 185, 404, 425, 468
BsiEI	CGRYCG	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	422, 469, 516, 652, 668
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	4 cut(s)	147, 289, 421, 475
BsmAI	GTCTC	2 cut(s)	20, 676
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	6 cut(s)	5, 108, 185, 404, 425, 468
Bso31I	GGTCTC	1 cut(s)	676
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	4 cut(s)	313, 351, 481, 522
Bsp143I	GATC	1 cut(s)	618
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	6 cut(s)	5, 108, 185, 404, 425, 468
BspFNI	CGCG	2 cut(s)	457, 555
BspHI	TCATGA	1 cut(s)	836
BspLI	GGNNCC	5 cut(s)	152, 200, 395, 480, 650
BspMAI	CTGCAG	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	636
BspQI	GCTCTTC	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	676
BsrDI	GCAATG	2 cut(s)	6, 294
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	408, 618
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	1 cut(s)	618
BssNAI	GTATAC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	665
BssSI	CACGAG	1 cut(s)	527
Bst1107I	GTATAC	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	2 cut(s)	302, 548
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	2 cut(s)	725, 762
BstACI	GRCGYC	1 cut(s)	665
BstBAI	YACGTR	2 cut(s)	567, 579
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	127, 223
BstFNI	CGCG	2 cut(s)	457, 555
BstHHI	GCGC	2 cut(s)	459, 555
BstKTI	GATC	1 cut(s)	621
BstMAI	GTCTC	2 cut(s)	20, 676
BstMBI	GATC	1 cut(s)	618
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	3 cut(s)	465, 559, 785
BstNI	CCWGG	2 cut(s)	302, 548
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSCI	CCNGG	4 cut(s)	300, 420, 515, 546
BstSFI	CTRYAG	1 cut(s)	593
BstUI	CGCG	2 cut(s)	457, 555
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	6 cut(s)	5, 108, 185, 404, 425, 468
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	127, 223
BtsIMutI	CAGTG	1 cut(s)	611
BveI	ACCTGC	1 cut(s)	636
CciI	TCATGA	1 cut(s)	836
CfoI	GCGC	2 cut(s)	459, 555
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	150, 199
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	5 cut(s)	161, 400, 523, 793, 837
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
EaeI	YGGCCR	6 cut(s)	3, 106, 183, 402, 423, 466
EagI	CGGCCG	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	725, 762
EarI	CTCTTC	2 cut(s)	725, 762
EclXI	CGGCCG	1 cut(s)	423
Eco24I	GRGCYC	4 cut(s)	313, 351, 481, 522
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	150, 199
Eco52I	CGGCCG	1 cut(s)	423
Eco72I	CACGTG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	150, 199
EcoRII	CCWGG	2 cut(s)	300, 546
EcoT38I	GRGCYC	4 cut(s)	313, 351, 481, 522
FaeI	CATG	5 cut(s)	164, 403, 526, 796, 840
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 323, 355
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	160, 399, 522, 792, 836
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	2 cut(s)	114, 210
FriOI	GRGCYC	4 cut(s)	313, 351, 481, 522
FspBI	CTAG	2 cut(s)	272, 284
GlaI	GCGC	2 cut(s)	458, 554
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	6 cut(s)	5, 108, 185, 404, 425, 468
HapII	CCGG	5 cut(s)	422, 469, 516, 652, 668
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	2 cut(s)	459, 555
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	164, 403, 526, 796, 840
Hin6I	GCGC	2 cut(s)	457, 553
HinP1I	GCGC	2 cut(s)	457, 553
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	2 cut(s)	157, 297
HpaII	CCGG	5 cut(s)	422, 469, 516, 652, 668
Hpy166II	GTNNAC	2 cut(s)	430, 684
Hpy188I	TCNGA	3 cut(s)	102, 663, 741
Hpy188III	TCNNGA	1 cut(s)	837
Hpy8I	GTNNAC	2 cut(s)	430, 684
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	2 cut(s)	254, 625
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	2 cut(s)	566, 578
HpyCH4V	TGCA	2 cut(s)	526, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	465, 559, 785
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	2 cut(s)	566, 578
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	5 cut(s)	164, 403, 526, 796, 840
HspAI	GCGC	2 cut(s)	457, 553
Kzo9I	GATC	1 cut(s)	618
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	3 cut(s)	484, 642, 741
MaeI	CTAG	2 cut(s)	272, 284
MaeII	ACGT	2 cut(s)	566, 578
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	1 cut(s)	620
MboI	GATC	1 cut(s)	618
MboII	GAAGA	7 cut(s)	399, 577, 640, 712, 728, 779, 808
MhlI	GDGCHC	4 cut(s)	313, 351, 481, 522
MlsI	TGGCCA	4 cut(s)	5, 108, 185, 404
MluCI	AATT	1 cut(s)	66
MluNI	TGGCCA	4 cut(s)	5, 108, 185, 404
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	8 cut(s)	54, 278, 290, 365, 407, 452, 565, 633
Mox20I	TGGCCA	4 cut(s)	5, 108, 185, 404
MscI	TGGCCA	4 cut(s)	5, 108, 185, 404
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	4 cut(s)	5, 108, 185, 404
MspI	CCGG	5 cut(s)	422, 469, 516, 652, 668
MspR9I	CCNGG	4 cut(s)	302, 422, 517, 548
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	302, 548
MvnI	CGCG	2 cut(s)	457, 555
MwoI	GCNNNNNNNGC	3 cut(s)	465, 559, 785
NciI	CCSGG	2 cut(s)	422, 517
NdeII	GATC	1 cut(s)	618
NlaIII	CATG	5 cut(s)	164, 403, 526, 796, 840
NlaIV	GGNNCC	5 cut(s)	152, 200, 395, 480, 650
PaeR7I	CTCGAG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	725
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	305
PmaCI	CACGTG	1 cut(s)	567
PmlI	CACGTG	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	2 cut(s)	567, 579
PpuMI	RGGWCCY	2 cut(s)	150, 199
PshAI	GACNNNNGTC	1 cut(s)	668
Psp5II	RGGWCCY	2 cut(s)	150, 199
Psp6I	CCWGG	2 cut(s)	300, 546
PspCI	CACGTG	1 cut(s)	567
PspGI	CCWGG	2 cut(s)	300, 546
PspN4I	GGNNCC	5 cut(s)	152, 200, 395, 480, 650
PspPI	GGNCC	2 cut(s)	150, 199
PspPPI	RGGWCCY	2 cut(s)	150, 199
PspXI	VCTCGAGB	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	597
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	618
Sau96I	GGNCC	2 cut(s)	150, 199
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	4 cut(s)	302, 422, 517, 548
SduI	GDGCHC	4 cut(s)	313, 351, 481, 522
SfcI	CTRYAG	1 cut(s)	593
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	150, 199
SlaI	CTCGAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	306, 329
SmoI	CTYRAG	2 cut(s)	306, 329
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	2 cut(s)	272, 284
StyD4I	CCNGG	4 cut(s)	300, 420, 515, 546
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	2 cut(s)	569, 581
TaqI	TCGA	5 cut(s)	24, 307, 444, 765, 808
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	618
TspDTI	ATGAA	3 cut(s)	236, 451, 809
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	150, 199
XhoI	CTCGAG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	2 cut(s)	272, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.