Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002564

Physical Location & Seq

Genomic Coordinates Forward (+)

6099334 .. 6103071

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCATCACATCCTTTTTCATTGCTTGGCTTGCAAACTGTAAGCTGTTGCTCTTTGCTTTCGATAAAGGACCTTTATCTTCTGAACCATCCATCACTCTTGGACGTTTTGTTGTTATTGCTTGCCTTCCTATCAAGGTCCAAAAGTCCCTCCCTCCAAATCAATTAGGCAAACCCAGAAAAATACAAAATGGAAAGAATTCGTCTTCACCACAATCACATATTGATGACCAATCTAAAGGAAACAAAATCCATCAAAAGTCCAAAGAGGGTAACATATTGCATTCAAATTATGCAACTAAGGTTTTGCTTTTGGGCATTTTGTTACGTGCCTATGATTTCATTAACTACATTCATCCCAATGCCTTATTACTTCTTTATTGTTTGCACATTTATCTGCTCCTTGAACTCATCCTAGCGGTGGTTGCATCCATGGCTCGTGCCTTGCTAGGCGTAGAGATTGAGCCACAATTTAATGATCCATACCTCTCCACCTCACTCCAAATTTTTTGCGGCAAGCGATGGAATCTCATGGTCTCAAGTACTCTACGCCCAACAGCATACGAACCCACCCTTAACATTTCCAAACATGTCGTTGGTCGTAAGTGGGCCTCATTACCTGCCGTACTTGCAACATTTGGTGTATCGGCGTTGATGCATGAGCTCATTTTTTACCACATGGGCCGAATGCCGATAACGGGTGAAGTAACATGCTTCTTCACGCTCCACGGGATCTGCCTAGCGGTTGAGATCTTTTTCAACAAGGCACTAACAAATAGGTGGCAACTTCCGATGTTGATCTCTCGATTTATGACCATTGTATTCGTGATATCGACGTCCGTGTGGCTGTTTCTTCCGCAATTTCTTCGGATTGGGGTTGATGTTAGGGCGTTCGTGCTGCGTTGGGAACATTTTTTAAGAATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006629 GO:0006706 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009987 GO:0016042 GO:0016125 GO:0016127 GO:0030258 GO:0034433 GO:0034434 GO:0044237 GO:0044238 GO:0044255 GO:0071704 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT_2

Protein Analysis

309

Amino Acids

34.99

Weight (kDa)

9.69

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBOAT_2	PF13813	155 - 241	4.2e-14	Membrane bound O-acyl transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51970
fragaria_vesca	FvH4_3g00990 FvH4_7g01920
malus_domestica	MD02G1299400.v1.1 MD02G1299700.v1.1 MD02G1299800.v1.1 MD10G1331600.v1.1
prunus_persica	Prupe.2G024800_v2.0.a1 Prupe.2G024900_v2.0.a1 Prupe.4G010500_v2.0.a1
pyrus_communis	pycom02g25180 pycom10g28120
rosa_chinensis	RchiOBHm_Chr1g0318541 RchiOBHm_Chr1g0318551 RchiOBHm_Chr5g0001521
rosa_laevigata	RLG00000030527 RLG00000030528 RLG00000030935
rosa_multiflora	Rmu_sc0001304.1_g000049 Rmu_sc0001304.1_g000050 Rmu_sc0002545.1_g000037 Rmu_sc0026087.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074890 Rroxscaffold_4G00329020
rosa_rugosa	Rorug01G0022100 Rorug01G0022200 Rorug04G0390800
rosa_samantha	Rh1AG034800 Rh1AG034900 Rh1BG030600 Rh1BG030700 Rh1BG031300 Rh1CG034200 Rh1DG036400 Rh5AG011900 Rh5BG014400 Rh5CG012900 Rh5DG012200
rosa_wichuraiana	Rw1G002750 Rw5G001120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	628
AciI	CCGC	4 cut(s)	419, 513, 743, 857
AclWI	GGATC	2 cut(s)	473, 740
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	199, 504
AcyI	GRCGYC	1 cut(s)	836
AfaI	GTAC	2 cut(s)	544, 627
AfiI	CCNNNNNNNGG	2 cut(s)	421, 698
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	288, 407, 760
AluBI	AGCT	2 cut(s)	46, 664
AluI	AGCT	2 cut(s)	46, 664
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	473, 740
AoxI	GGCC	3 cut(s)	3, 609, 682
ApeKI	GCWGC	1 cut(s)	898
ApoI	RAATTY	2 cut(s)	199, 504
Asp700I	GAANNNNTTC	1 cut(s)	199
AspS9I	GGNCC	4 cut(s)	71, 139, 609, 682
AsuHPI	GGTGA	2 cut(s)	201, 713
AvaII	GGWCC	2 cut(s)	71, 139
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	885
BccI	CCATC	5 cut(s)	14, 97, 101, 261, 516
BceAI	ACGGC	1 cut(s)	608
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	3 cut(s)	416, 449, 740
BfuAI	ACCTGC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	2 cut(s)	514, 899
BlsI	GCNGC	2 cut(s)	515, 900
BmcAI	AGTACT	1 cut(s)	544
Bme18I	GGWCC	2 cut(s)	71, 139
BmgT120I	GGNCC	4 cut(s)	71, 139, 609, 682
BmsI	GCATC	2 cut(s)	437, 645
BpiI	GAAGAC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	836
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	432, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 698
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	432, 727
BseGI	GGATG	5 cut(s)	11, 89, 355, 411, 428
BseJI	GATNNNNATC	1 cut(s)	797
BseLI	CCNNNNNNNGG	2 cut(s)	421, 698
BseMI	GCAATG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	885
BshFI	GGCC	3 cut(s)	5, 611, 684
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	421, 698
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	283, 693
BsnI	GGCC	3 cut(s)	5, 611, 684
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	4 cut(s)	478, 732, 750, 798
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	4 cut(s)	419, 513, 743, 857
BspANI	GGCC	3 cut(s)	5, 611, 684
BspHI	TCATGA	1 cut(s)	926
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	2 cut(s)	473, 740
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	432, 727
BssMI	GATC	4 cut(s)	478, 732, 750, 798
BssNI	GRCGYC	1 cut(s)	836
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	836
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	33, 124, 518
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	2 cut(s)	432, 727
BstF5I	GGATG	5 cut(s)	11, 89, 355, 411, 428
BstKTI	GATC	4 cut(s)	481, 735, 753, 801
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	4 cut(s)	478, 732, 750, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 425, 434, 629
BstNSI	RCATGY	2 cut(s)	593, 714
BstV1I	GCAGC	1 cut(s)	885
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	732, 750
BstYI	RGATCY	2 cut(s)	732, 750
BsuRI	GGCC	3 cut(s)	5, 611, 684
BtgI	CCRYGG	2 cut(s)	432, 727
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	5 cut(s)	11, 89, 355, 411, 428
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	33, 124, 518
CciI	TCATGA	1 cut(s)	926
Cfr13I	GGNCC	4 cut(s)	71, 139, 609, 682
Csp6I	GTAC	2 cut(s)	543, 626
CviAII	CATG	7 cut(s)	433, 532, 590, 659, 679, 711, 927
CviJI	RGCY	9 cut(s)	5, 31, 46, 437, 466, 611, 664, 684, 847
CviKI_1	RGCY	9 cut(s)	5, 31, 46, 437, 466, 611, 664, 684, 847
CviQI	GTAC	2 cut(s)	543, 626
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	4 cut(s)	480, 734, 752, 800
DpnII	GATC	4 cut(s)	478, 732, 750, 798
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	2 cut(s)	71, 139
Eco53kI	GAGCTC	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	7 cut(s)	436, 535, 593, 662, 682, 714, 930
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	7 cut(s)	432, 531, 589, 658, 678, 710, 926
Fnu4HI	GCNGC	2 cut(s)	514, 899
FokI	GGATG	4 cut(s)	76, 342, 398, 415
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	2 cut(s)	514, 899
FspBI	CTAG	3 cut(s)	416, 449, 740
GluI	GCNGC	2 cut(s)	514, 899
HaeIII	GGCC	3 cut(s)	5, 611, 684
Hin1I	GRCGYC	1 cut(s)	836
Hin1II	CATG	7 cut(s)	436, 535, 593, 662, 682, 714, 930
HinfI	GANTC	2 cut(s)	526, 921
HphI	GGTGA	2 cut(s)	201, 713
Hpy188I	TCNGA	3 cut(s)	85, 792, 870
Hpy188III	TCNNGA	3 cut(s)	804, 826, 927
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	3 cut(s)	106, 328, 836
HpyCH4V	TGCA	7 cut(s)	35, 283, 296, 388, 428, 632, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 425, 434, 629
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	3 cut(s)	106, 328, 836
Hsp92I	GRCGYC	1 cut(s)	836
Hsp92II	CATG	7 cut(s)	436, 535, 593, 662, 682, 714, 930
Kzo9I	GATC	4 cut(s)	478, 732, 750, 798
LmnI	GCTCC	2 cut(s)	405, 729
LpnPI	CCDG	2 cut(s)	190, 633
Lsp1109I	GCAGC	1 cut(s)	885
LweI	GCATC	2 cut(s)	437, 645
MaeI	CTAG	3 cut(s)	416, 449, 740
MaeII	ACGT	3 cut(s)	106, 328, 836
MaeIII	GTNAC	3 cut(s)	272, 324, 706
MalI	GATC	4 cut(s)	480, 734, 752, 800
MboI	GATC	4 cut(s)	478, 732, 750, 798
MboII	GAAGA	5 cut(s)	72, 198, 709, 845, 857
MflI	RGATCY	2 cut(s)	732, 750
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	164, 199, 289, 470, 504, 860
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	161, 165, 262, 497, 505, 622
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	660
MroXI	GAANNNNTTC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	345, 474, 576, 917
MslI	CAYNNNNRTG	2 cut(s)	225, 360
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	2 cut(s)	283, 693
MwoI	GCNNNNNNNGC	4 cut(s)	32, 425, 434, 629
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	4 cut(s)	478, 732, 750, 798
NlaIII	CATG	7 cut(s)	436, 535, 593, 662, 682, 714, 930
NsiI	ATGCAT	1 cut(s)	660
NspI	RCATGY	2 cut(s)	593, 714
PagI	TCATGA	1 cut(s)	926
PciI	ACATGT	1 cut(s)	589
PctI	GAATGC	2 cut(s)	283, 693
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	526, 921
PkrI	GCNGC	2 cut(s)	515, 900
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	71
PscI	ACATGT	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	71
PspPI	GGNCC	4 cut(s)	71, 139, 609, 682
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	732, 750
RsaI	GTAC	2 cut(s)	544, 627
RsaNI	GTAC	2 cut(s)	543, 626
RseI	CAYNNNNRTG	2 cut(s)	225, 360
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	345, 474, 576, 917
SatI	GCNGC	2 cut(s)	514, 899
Sau3AI	GATC	4 cut(s)	478, 732, 750, 798
Sau96I	GGNCC	4 cut(s)	71, 139, 609, 682
ScaI	AGTACT	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	437, 645
SinI	GGWCC	2 cut(s)	71, 139
SmiMI	CAYNNNNRTG	2 cut(s)	225, 360
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	6 cut(s)	164, 199, 289, 470, 504, 860
SsiI	CCGC	4 cut(s)	419, 513, 743, 857
SspMI	CTAG	3 cut(s)	416, 449, 740
SstI	GAGCTC	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	3 cut(s)	109, 331, 839
TaqI	TCGA	3 cut(s)	63, 805, 833
TasI	AATT	6 cut(s)	164, 199, 289, 470, 504, 860
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	526, 921
Tru1I	TTAA	4 cut(s)	345, 474, 576, 917
Tru9I	TTAA	4 cut(s)	345, 474, 576, 917
TseI	GCWGC	1 cut(s)	898
TspDTI	ATGAA	3 cut(s)	10, 331, 344
TspGWI	ACGGA	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	71, 139
XapI	RAATTY	2 cut(s)	199, 504
XceI	RCATGY	2 cut(s)	593, 714
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	3 cut(s)	416, 449, 740
ZraI	GACGTC	1 cut(s)	837
ZrmI	AGTACT	1 cut(s)	544
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.