Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

489459 .. 492606

Gene Structure 3148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCAGAAGGAGAGAAATTGGACTGCTCTGCTCGTGTGACCAATAAGGATGAGAGAGAGGGAGAGGACAATCAAACAAAGAAACGGGTAACCCTAAACAAAGGACACTTTTATATAAACTCCTACGGATATTCGTCTCTCTATCGACGCTGTGTCTGGGCGTTTACAGAGCCAAAACAAAAGCAAGCCACCGCCGTCGACTTCCAGTTCCTCAACCTTAATCCATCCTCTCCGATTCTCCCCCTTCAGGAGGCTGCTGACAGTTCTATAATGAGGGGAAGGAGTTACAGTCCATCACCACCACCGAGGGGAGGATATGGTAGGAGGGGACAACGAAGTCCTAGCCCCAGGGGTCGCTATAGCGGTGGTCGTGGTAGCAGTAGAGATCTTCCTACAAGCCTTCTAGTTCGCAACCTTCGCCATGATTGCAGGCCAGAAGATCTCCGCAGGCCATTTGGGCAGTTTGGCGTGCTTAAGGACATCTACCTGCCAAAGGATTACTATACTGGGGAGCCTCGTGGTTTTGGTTTTGTCCAGTTTGTTGACCCTTCTGATGCTGAAGAGGCTAAATATCAAATGGATGGTCAGCTTCTTCTTGGTCGGGAGATAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCATCTGATATGAGGCATAGGGAGCGTCCAAGCTCCCGGACTACTAGTCGATATCGTGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

236

Amino Acids

26.98

Weight (kDa)

9.72

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	134 - 204	1.1e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	192, 363, 445
AcuI	CTGAAG	2 cut(s)	230, 579
AfiI	CCNNNNNNNGG	5 cut(s)	247, 250, 308, 311, 493
AflII	CTTAAG	1 cut(s)	473
AhdI	GACNNNNNGTC	2 cut(s)	152, 687
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	589, 675
AluI	AGCT	2 cut(s)	589, 675
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	431, 449
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	1 cut(s)	288
BauI	CACGAG	2 cut(s)	33, 516
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	232, 301, 575, 652
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	342, 404, 687
BfmI	CTRYAG	1 cut(s)	358
BfrI	CTTAAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	457
BglII	AGATCT	2 cut(s)	385, 439
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	349, 679
BmeRI	GACNNNNNGTC	2 cut(s)	152, 687
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	349, 679
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	679
Bsa29I	ATCGAT	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	305, 347, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 250, 308, 311, 493
Bse1I	ACTGG	3 cut(s)	205, 511, 535
BseBI	CCWGG	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	3 cut(s)	305, 347, 348
BseGI	GGATG	3 cut(s)	55, 224, 586
BseLI	CCNNNNNNNGG	5 cut(s)	247, 250, 308, 311, 493
BseNI	ACTGG	3 cut(s)	205, 511, 535
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	433, 451
BshVI	ATCGAT	1 cut(s)	703
BsiSI	CCGG	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	5 cut(s)	247, 250, 308, 311, 493
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	433, 451
Bsp143I	GATC	3 cut(s)	385, 439, 700
BspACI	CCGC	3 cut(s)	192, 363, 445
BspANI	GGCC	2 cut(s)	433, 451
BspDI	ATCGAT	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	205, 511, 535
BssECI	CCNNGG	3 cut(s)	305, 347, 348
BssMI	GATC	3 cut(s)	385, 439, 700
BssSI	CACGAG	2 cut(s)	33, 516
Bst2BI	CACGAG	2 cut(s)	33, 516
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	263, 290, 613
Bst6I	CTCTTC	1 cut(s)	555
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	4 cut(s)	186, 431, 449, 470
BstEII	GGTNACC	1 cut(s)	88
BstENI	CCTNNNNNAGG	2 cut(s)	248, 491
BstF5I	GGATG	3 cut(s)	55, 224, 586
BstKTI	GATC	3 cut(s)	388, 442, 703
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	385, 439, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	417, 426, 457, 563, 664
BstNI	CCWGG	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	347, 677
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	385, 439
BstYI	RGATCY	2 cut(s)	385, 439
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	433, 451
BsuTUI	ATCGAT	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	55, 224, 586
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	4 cut(s)	186, 431, 449, 470
ClaI	ATCGAT	1 cut(s)	703
CseI	GACGC	2 cut(s)	156, 656
CviAII	CATG	1 cut(s)	422
DpnI	GATC	3 cut(s)	387, 441, 702
DpnII	GATC	3 cut(s)	385, 439, 700
DrdI	GACNNNNNNGTC	1 cut(s)	336
DriI	GACNNNNNGTC	2 cut(s)	152, 687
DseDI	GACNNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	2 cut(s)	152, 687
EarI	CTCTTC	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	230, 579
Eco91I	GGTNACC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 491
EcoO65I	GGTNACC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	1 cut(s)	425
FaiI	YATR	9 cut(s)	114, 116, 269, 318, 360, 423, 504, 653, 660
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	3 cut(s)	62, 211, 593
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	342, 404, 687
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	433, 451
HapII	CCGG	1 cut(s)	679
HgaI	GACGC	2 cut(s)	156, 656
Hin1II	CATG	1 cut(s)	425
HincII	GTYRAC	2 cut(s)	199, 544
HindII	GTYRAC	2 cut(s)	199, 544
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	165, 199, 544
Hpy188I	TCNGA	4 cut(s)	7, 234, 553, 649
Hpy188III	TCNNGA	3 cut(s)	248, 602, 698
Hpy8I	GTNNAC	3 cut(s)	165, 199, 544
Hpy99I	CGWCG	2 cut(s)	150, 200
HpyAV	CCTTC	5 cut(s)	254, 273, 410, 425, 558
HpyCH4III	ACNGT	3 cut(s)	263, 290, 613
HpyCH4V	TGCA	2 cut(s)	429, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	417, 426, 457, 563, 664
Hsp92II	CATG	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	385, 439, 700
LmnI	GCTCC	3 cut(s)	511, 664, 680
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	3 cut(s)	342, 404, 687
MaeIII	GTNAC	3 cut(s)	37, 88, 284
MalI	GATC	3 cut(s)	387, 441, 702
MboI	GATC	3 cut(s)	385, 439, 700
MboII	GAAGA	5 cut(s)	380, 449, 572, 584, 649
MflI	RGATCY	2 cut(s)	385, 439
MluCI	AATT	1 cut(s)	17
MseI	TTAA	2 cut(s)	219, 474
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	2 cut(s)	349, 679
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	5 cut(s)	417, 426, 457, 563, 664
NciI	CCSGG	1 cut(s)	679
NdeII	GATC	3 cut(s)	385, 439, 700
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	37
PasI	CCCWGGG	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	677
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	513
PsuI	RGATCY	2 cut(s)	385, 439
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	219, 474
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	3 cut(s)	385, 439, 700
ScrFI	CCNGG	2 cut(s)	349, 679
SetI	ASST	5 cut(s)	219, 417, 489, 591, 677
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	192, 363, 445
SspMI	CTAG	3 cut(s)	342, 404, 687
StyD4I	CCNGG	2 cut(s)	347, 677
TaaI	ACNGT	3 cut(s)	263, 290, 613
TaqI	TCGA	4 cut(s)	145, 198, 691, 703
TasI	AATT	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	219, 474
Tru9I	TTAA	2 cut(s)	219, 474
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	473
XagI	CCTNNNNNAGG	2 cut(s)	248, 491
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	3 cut(s)	342, 404, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.