Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002112

Physical Location & Seq

Genomic Coordinates Forward (+)

873326 .. 874467

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGTCATCTCGATCGATCACGACCAAAGTCAATCCCCAATTTTATGCATTTAGGTGGATCACCCTCCTCTTAACCCAGGAATTCAATTTCGCAGACAGCCTTCACATTTGGGATACACTTTTAAGTGACCCCGAAGGTCCTCAGGAAACCCTTCTTCGAGTATGCTGCGCAATGTTGATTCTCATTCGGAGACGCTTACTAGCAGGTGATTTTACCTCAAATCTCAAACTACTGCAGAGCTATCCTCCGACAAACATCAGCCATCTGCTCTACGTTGCCAACAAGTTGCGGGTACAATCCTCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

9.18

Isoelectric Point (pI)

74.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	10 - 67	3.2e-10	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04830 AT1G04830 AT1G04830 AT4G13730 AT4G13730 AT4G13730
fragaria_vesca	FvH4_1g03180 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770 FvH4_4g13770
malus_domestica	MD02G1030800.v1.1 MD04G1012300.v1.1 MD13G1283700.v1.1
prunus_persica	Prupe.1G158400_v2.0.a1 Prupe.7G243700_v2.0.a1 Prupe.7G243700_v2.0.a1
pyrus_communis	pycom02g02570 pycom04g00970 pycom04g00980 pycom15g15410 pycom420g01230
rosa_chinensis	RchiOBHm_Chr2g0088311 RchiOBHm_Chr4g0414611
rosa_laevigata	RLG00000008143 RLG00000015941
rosa_multiflora	Rmu_sc0004235.1_g000035 Rmu_sc0007034.1_g000031 Rmu_sc0012211.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358370
rosa_rugosa	Rorug01G0482800 Rorug04G0128100 Rorug04G0128200
rosa_samantha	Rh2AG037900 Rh2BG037100 Rh2CG038200 Rh2DG037600 Rh4AG186900 Rh4BG185600 Rh4CG199000 Rh4DG185100
rosa_wichuraiana	Rw2G002990 Rw4G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	55, 221
AvaII	GGWCC	1 cut(s)	140
AxyI	CCTNAGG	2 cut(s)	144, 304
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	273
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	80
BoxI	GACNNNNGTC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bsa29I	ATCGAT	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	78
Bse21I	CCTNAGG	2 cut(s)	144, 304
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	14, 18, 60
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	14, 18, 60
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	144, 304
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	17, 21, 63
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	14, 18, 60
BstMCI	CGRYCG	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	80
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	17
Bsu36I	CCTNAGG	2 cut(s)	144, 304
BsuI	GTATCC	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	296
CviJI	RGCY	4 cut(s)	102, 243, 264, 309
CviKI_1	RGCY	4 cut(s)	102, 243, 264, 309
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	2 cut(s)	144, 304
DpnI	GATC	3 cut(s)	16, 20, 62
DpnII	GATC	3 cut(s)	14, 18, 60
Eco47I	GGWCC	1 cut(s)	140
Eco81I	CCTNAGG	2 cut(s)	144, 304
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	187
FaiI	YATR	2 cut(s)	48, 166
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	203
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	169
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	2 cut(s)	55, 221
Hpy188I	TCNGA	2 cut(s)	192, 252
Hpy188III	TCNNGA	3 cut(s)	12, 22, 146
HpyAV	CCTTC	3 cut(s)	113, 131, 164
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	50, 238
HpyF3I	CTNAG	2 cut(s)	144, 304
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	14, 18, 60
LpnPI	CCDG	5 cut(s)	65, 92, 131, 192, 291
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	16, 20, 62
MboI	GATC	3 cut(s)	14, 18, 60
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	3 cut(s)	41, 83, 88
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	77, 80, 153, 229, 258
Mph1103I	ATGCAT	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	74, 125
MslI	CAYNNNNRTG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	14, 18, 60
NmuCI	GTSAC	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	170
Ple19I	CGATCG	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	140
PspPPI	RGGWCCY	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	240
PvuI	CGATCG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	74, 125
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	14, 18, 60
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	6 cut(s)	59, 142, 211, 221, 245, 279
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	41, 83, 88
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	13, 17, 160
TasI	AATT	3 cut(s)	41, 83, 88
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	74, 125
Tru9I	TTAA	2 cut(s)	74, 125
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.