Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Forward (+)

6450406 .. 6452792

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCCTGCATAGAAGTTTTCATTTCTAGCAAACAGGGTGAAATGCAGTTAGAAACTGAGGTAGATGGGGCTTTCTCTGAGTTTGAAGTTCTGGATATTGTGTGTGATGTCGCCATTTCATCTGGAAAGGAGAATCTGCACATTCTTTGCTCTAAAGTTGAGCCTACTATGGGTCCACAAACTGCACATTTGGTACATTTCAAAACTGGTGACATGAATAAGAGCTCACTTCTTACCTTCTCTTCTGGAAATGTTGATCATCCGTCTCCCAGGCTTGGTGATTCTAGTACCCTGAATCCAACCTCTGATTCCCAAGTGAATACAGAAAACCTTGTTGAAACTAACCACTTGGGTGGTGTCATTTTAGGGGAGGTGGTGCATTTAGAAGCTGTTATTGGGCCACCTGGAAAATTGAGTAGAAATAGAAACGCTTCTACAGCGTCAAATCTTCCTCATAAGTGCAAATCTTCTGTAACTGAGAAAGCTAAAGGTGAAACATTGTCCAGGCAGCCGAGGAAGAGGGTACCTCATAAACAAGTTGATGAGCTAGCAGATGAGGCTAACGACGATAGCTTCACTGCTGAACCTTATATTGATTCTAAGGTCAATGAAGATGTGAATAATGATGATGAATATAGGGAGCATAATACATCGGAGAGGAAAATAGTCCCCAGAAAGGCCAAAAAAACTGTATCTGAAAAAGAACCAGTTCAAAAACATAAGAGGACCAAGGAAGCATTTGATTATACTAACAATGATTCTCACAAGGAAGCTTCTCACAACGAAGATGAGTTTTTTCCTTCAGGACATGGCATTGATGAAAACCAAGCAACTTATCATGTTAATTCCTCTATCCTCAATTACCAGACTTGCATGGACAAAGCACCCACTGCAAGATGGTCTAAGCAGGACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

306

Amino Acids

33.86

Weight (kDa)

5.46

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	195, 289, 525
AfiI	CCNNNNNNNGG	3 cut(s)	170, 275, 676
AgsI	TTSAA	4 cut(s)	86, 202, 338, 713
AjnI	CCWGG	3 cut(s)	269, 403, 503
AjuI	GAANNNNNNNTTGG	4 cut(s)	292, 324, 378, 410
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	6 cut(s)	225, 389, 485, 547, 573, 773
AluI	AGCT	6 cut(s)	225, 389, 485, 547, 573, 773
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	398, 678
ApeKI	GCWGC	1 cut(s)	508
Asp700I	GAANNNNTTC	2 cut(s)	430, 708
Asp718I	GGTACC	1 cut(s)	523
AspS9I	GGNCC	3 cut(s)	173, 398, 726
AsuHPI	GGTGA	4 cut(s)	50, 221, 290, 503
AsuNHI	GCTAGC	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	173, 726
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	59, 891
BciT130I	CCWGG	3 cut(s)	271, 405, 505
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	3 cut(s)	27, 285, 548
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	3 cut(s)	271, 405, 505
Bme18I	GGWCC	2 cut(s)	173, 726
BmgT120I	GGNCC	3 cut(s)	173, 398, 726
BmiI	GGNNCC	2 cut(s)	174, 525
BmrFI	CCNGG	3 cut(s)	271, 405, 505
BmtI	GCTAGC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BsaJI	CCNNGG	3 cut(s)	269, 512, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 275, 676
Bse1I	ACTGG	2 cut(s)	211, 707
BseBI	CCWGG	3 cut(s)	271, 405, 505
BseDI	CCNNGG	3 cut(s)	269, 512, 729
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	170, 275, 676
BseMII	CTCAG	3 cut(s)	48, 69, 468
BseNI	ACTGG	2 cut(s)	211, 707
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	2 cut(s)	122, 168
BshFI	GGCC	2 cut(s)	400, 680
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	170, 275, 676
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	400, 680
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	400, 680
BspCNI	CTCAG	3 cut(s)	49, 70, 469
BspLI	GGNNCC	2 cut(s)	174, 525
BspOI	GCTAGC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	211, 707
BssECI	CCNNGG	3 cut(s)	269, 512, 729
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	3 cut(s)	271, 405, 505
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	2 cut(s)	247, 512
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	5 cut(s)	57, 78, 477, 600, 903
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 557, 890
BstNI	CCWGG	3 cut(s)	271, 405, 505
BstSCI	CCNGG	3 cut(s)	269, 403, 503
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	400, 680
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	2 cut(s)	576, 888
BtsIMutI	CAGTG	2 cut(s)	576, 888
Cac8I	GCNNGC	1 cut(s)	549
Cfr13I	GGNCC	3 cut(s)	173, 398, 726
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	194, 288, 524
CviAII	CATG	4 cut(s)	214, 809, 839, 874
CviQI	GTAC	3 cut(s)	194, 288, 524
DdeI	CTNAG	5 cut(s)	57, 78, 477, 600, 903
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	247, 512
EarI	CTCTTC	2 cut(s)	247, 512
Ecl136II	GAGCTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	173, 726
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	269, 403, 503
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	4 cut(s)	217, 812, 842, 877
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	4 cut(s)	213, 808, 838, 873
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	3 cut(s)	27, 285, 548
GluI	GCNGC	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	400, 680
HgaI	GACGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	217, 812, 842, 877
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	6 cut(s)	133, 281, 295, 308, 596, 758
HphI	GGTGA	4 cut(s)	50, 221, 290, 503
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	4 cut(s)	79, 307, 655, 697
Hpy188III	TCNNGA	4 cut(s)	92, 123, 246, 804
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	2 cut(s)	247, 810
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4V	TGCA	8 cut(s)	9, 46, 139, 185, 379, 462, 873, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 557, 890
HpyF3I	CTNAG	5 cut(s)	57, 78, 477, 600, 903
Hsp92II	CATG	4 cut(s)	217, 812, 842, 877
KpnI	GGTACC	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	520
MaeI	CTAG	3 cut(s)	27, 285, 548
MaeIII	GTNAC	2 cut(s)	209, 472
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	6 cut(s)	234, 440, 459, 529, 623, 797
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	410, 844, 859
MmeI	TCCRAC	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	430, 708
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	1 cut(s)	351
MspR9I	CCNGG	3 cut(s)	271, 405, 505
MvaI	CCWGG	3 cut(s)	271, 405, 505
MwoI	GCNNNNNNNGC	3 cut(s)	437, 557, 890
NdeII	GATC	1 cut(s)	256
NheI	GCTAGC	1 cut(s)	547
NlaIII	CATG	4 cut(s)	217, 812, 842, 877
NlaIV	GGNNCC	2 cut(s)	174, 525
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	351
PdmI	GAANNNNTTC	2 cut(s)	430, 708
PfeI	GAWTC	6 cut(s)	133, 281, 295, 308, 596, 758
PkrI	GCNGC	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	3 cut(s)	269, 403, 503
PspGI	CCWGG	3 cut(s)	269, 403, 503
PspN4I	GGNNCC	2 cut(s)	174, 525
PspPI	GGNCC	3 cut(s)	173, 398, 726
RsaI	GTAC	3 cut(s)	195, 289, 525
RsaNI	GTAC	3 cut(s)	194, 288, 524
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	3 cut(s)	173, 398, 726
ScrFI	CCNGG	3 cut(s)	271, 405, 505
SduI	GDGCHC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	173, 726
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	410, 844, 859
SspMI	CTAG	3 cut(s)	27, 285, 548
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	269, 403, 503
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	691
TasI	AATT	3 cut(s)	410, 844, 859
TfiI	GAWTC	6 cut(s)	133, 281, 295, 308, 596, 758
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TscAI	CASTG	2 cut(s)	583, 895
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	6 cut(s)	10, 108, 230, 624, 645, 834
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	583, 895
VpaK11BI	GGWCC	2 cut(s)	173, 726
XmnI	GAANNNNTTC	2 cut(s)	430, 708
XspI	CTAG	3 cut(s)	27, 285, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.