Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Reverse (-)

57766530 .. 57767650

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG368400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCATGCGAGGAGCTTCATACAGAACTTCATCCAGTGTTAATTTTGTTTTTATTTATCTTTCGTTCTGACAATTCGAAATATGTTTTGGTGATTAATGAGCTGCAAAAAGGTGCTCGGGAAAAGCTGGAGTCTAATGCAGATGAGTCGAGTGACATGGCAGGCCAGGAGGAGGTAGAGCTGACTCATGATAACAATGGGGAAGTGGCAAAACCTGAGTTGGATAAAATTGAAGATATGGAAACTGATGTTGCTGCTGAAGTTCAACACGAGGAACCTGCTGTTGCTGAAGTACATAGTCCGATGAAGTCTGATCAAAGTGATGATGGTGACGGTTTTGGCGGTTGGGATGATGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

4.11

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AciI	CCGC	1 cut(s)	342
AcuI	CTGAAG	2 cut(s)	279, 309
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	233, 266
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	16, 103, 127, 181
AluI	AGCT	4 cut(s)	16, 103, 127, 181
Alw21I	GWGCWC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	103, 254
AseI	ATTAAT	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	103, 341
AsuII	TTCGAA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	117
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	90, 241
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	4 cut(s)	129, 163, 260, 294
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	104, 255
BlsI	GCNGC	2 cut(s)	105, 256
Bme1390I	CCNGG	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	31, 355
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	26, 185
BseXI	GCAGC	2 cut(s)	90, 241
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	31, 355
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	90, 241
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	31, 355
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	163
CciI	TCATGA	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	6, 157, 188
CviJI	RGCY	5 cut(s)	16, 103, 127, 165, 181
CviKI_1	RGCY	5 cut(s)	16, 103, 127, 165, 181
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	279, 309
Eco88I	CYCGRG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	9, 160, 191
FaiI	YATR	7 cut(s)	7, 21, 84, 158, 189, 239, 297
FatI	CATG	3 cut(s)	5, 156, 187
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	104, 255
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	104, 255
GluI	GCNGC	2 cut(s)	104, 255
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	9, 160, 191
HinfI	GANTC	3 cut(s)	131, 146, 184
HphI	GGTGA	2 cut(s)	103, 341
Hpy188I	TCNGA	3 cut(s)	70, 303, 313
Hpy188III	TCNNGA	2 cut(s)	119, 188
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	106, 140
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	9, 160, 191
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	7 cut(s)	48, 113, 147, 152, 179, 228, 291
Lsp1109I	GCAGC	2 cut(s)	90, 241
MaeIII	GTNAC	2 cut(s)	152, 329
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	3 cut(s)	42, 73, 228
MlyI	GAGTC	3 cut(s)	140, 155, 178
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	4, 163, 166, 265
MseI	TTAA	2 cut(s)	41, 96
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	9, 160, 191
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	152, 329
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	105, 256
PleI	GAGTC	3 cut(s)	139, 154, 178
PpsI	GAGTC	3 cut(s)	139, 154, 178
PshBI	ATTAAT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	41, 96
SatI	GCNGC	2 cut(s)	104, 255
Sau3AI	GATC	1 cut(s)	313
SchI	GAGTC	3 cut(s)	140, 155, 178
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	18, 105, 115, 129, 177, 183, 217, 280
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	3 cut(s)	42, 73, 228
SsiI	CCGC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	77, 149
TasI	AATT	3 cut(s)	42, 73, 228
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	41, 96
Tru9I	TTAA	2 cut(s)	41, 96
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	152, 329
TseI	GCWGC	2 cut(s)	103, 254
Tsp45I	GTSAC	2 cut(s)	152, 329
TspDTI	ATGAA	3 cut(s)	8, 20, 320
TspRI	CASTG	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.