Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Forward (+)

5995067 .. 5996758

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACAAAGCACCGACTGCAAGATGGTCTAAGCAGGACACAGAACTGTTCTATGAGGCTATTCAGCAGTGTGGATCAGATTTTACTATGATTCAAGAACTTTATTTTCCTGGTCGAACGCGTCATCAAGTCAAGTTAAAATTCAAGAAGGAAGAGCGTCAACATCCATTACGCATCTCAGAAGCCGTACTAAGTCGCTCGACTCATTCCACAGATCATTCCCAATTTACTTCATATATTGAGAAGCTGCAACAAGCTGCTCAGGCAAACAAGGAATCTAATGCAGATGAGTCAGTTGACTTGACTGGCAAGAAGGAAGGACTAAGAGAGCAGACTCGGGATACTGATGAGGGAATGGAGAAACCCGAGTCGGAAGAAGTTCAAGATCAGGAAGCTGATGTTGCTGAAGTTCAAGATCAAGAAGCTGTTGCTGCTGAAGTTAGCAATCCCTTGAAGTCCGATGAAATTGACGAAGAAGATTTTACATGGTCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

4.56

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	426, 456
AfaI	GTAC	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	5 cut(s)	95, 145, 383, 413, 454
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	247, 257, 395, 425
AluI	AGCT	4 cut(s)	247, 257, 395, 425
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	2 cut(s)	336, 365
ApeKI	GCWGC	3 cut(s)	247, 257, 431
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	489
AvaI	CYCGRG	2 cut(s)	336, 365
AvaII	GGWCC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	234, 244, 418
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	248, 258, 432
BlsI	GCNGC	3 cut(s)	249, 259, 433
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	2 cut(s)	336, 365
BmgT120I	GGNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	192, 275
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	234, 244, 418
Bsh1236I	CGCG	1 cut(s)	121
BsiHKCI	CYCGRG	2 cut(s)	336, 365
BsoBI	CYCGRG	2 cut(s)	336, 365
Bsp143I	GATC	4 cut(s)	74, 214, 385, 415
BspCNI	CTCAG	2 cut(s)	191, 274
BspFNI	CGCG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	74, 214, 385, 415
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstDEI	CTNAG	5 cut(s)	30, 178, 191, 261, 323
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	4 cut(s)	77, 217, 388, 418
BstMBI	GATC	4 cut(s)	74, 214, 385, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 263, 401, 431
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	234, 244, 418
BsuI	GTATCC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	2 cut(s)	110, 146
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	486
CviJI	RGCY	6 cut(s)	59, 185, 247, 257, 395, 425
CviKI_1	RGCY	6 cut(s)	59, 185, 247, 257, 395, 425
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	5 cut(s)	30, 178, 191, 261, 323
DpnI	GATC	4 cut(s)	76, 216, 387, 417
DpnII	GATC	4 cut(s)	74, 214, 385, 415
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	2 cut(s)	426, 456
Eco88I	CYCGRG	2 cut(s)	336, 365
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	489
FaiI	YATR	5 cut(s)	54, 89, 235, 237, 487
FatI	CATG	1 cut(s)	485
Fnu4HI	GCNGC	3 cut(s)	248, 258, 432
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	248, 258, 432
GluI	GCNGC	3 cut(s)	248, 258, 432
HgaI	GACGC	2 cut(s)	110, 146
Hin1II	CATG	1 cut(s)	489
HincII	GTYRAC	2 cut(s)	161, 298
HindII	GTYRAC	2 cut(s)	161, 298
HinfI	GANTC	6 cut(s)	91, 202, 275, 290, 334, 368
Hpy166II	GTNNAC	2 cut(s)	161, 298
Hpy188I	TCNGA	5 cut(s)	79, 181, 373, 460, 493
Hpy188III	TCNNGA	7 cut(s)	95, 145, 338, 383, 389, 413, 419
Hpy8I	GTNNAC	2 cut(s)	161, 298
HpyAV	CCTTC	3 cut(s)	142, 307, 311
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	20, 250, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 263, 401, 431
HpyF3I	CTNAG	5 cut(s)	30, 178, 191, 261, 323
Hsp92II	CATG	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	74, 214, 385, 415
LguI	GCTCTTC	1 cut(s)	147
LpnPI	CCDG	6 cut(s)	20, 96, 123, 248, 291, 374
Lsp1109I	GCAGC	3 cut(s)	234, 244, 418
LweI	GCATC	1 cut(s)	183
MalI	GATC	4 cut(s)	76, 216, 387, 417
MboI	GATC	4 cut(s)	74, 214, 385, 415
MboII	GAAGA	4 cut(s)	164, 386, 485, 488
MluCI	AATT	3 cut(s)	140, 224, 465
MluI	ACGCGT	1 cut(s)	119
MlyI	GAGTC	4 cut(s)	196, 299, 328, 377
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	2 cut(s)	49, 343
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	4 cut(s)	17, 263, 401, 431
NdeII	GATC	4 cut(s)	74, 214, 385, 415
NlaIII	CATG	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	91, 275
PkrI	GCNGC	3 cut(s)	249, 259, 433
PleI	GAGTC	4 cut(s)	196, 298, 328, 376
PpsI	GAGTC	4 cut(s)	196, 298, 328, 376
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	489
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	3 cut(s)	248, 258, 432
Sau3AI	GATC	4 cut(s)	74, 214, 385, 415
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	4 cut(s)	196, 299, 328, 377
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	4 cut(s)	249, 259, 397, 427
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	3 cut(s)	140, 224, 465
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	115, 200
TasI	AATT	3 cut(s)	140, 224, 465
TfiI	GAWTC	2 cut(s)	91, 275
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	3 cut(s)	247, 257, 431
TspDTI	ATGAA	2 cut(s)	222, 477
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.