Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Forward (+)

50375669 .. 50382605

Gene Structure 6937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGCTGGCAGATTTCGGCCCAAGGCAAAGCCCAAGTCTACGAAAGTAGCATCTAGTGCAGCTGCTTTTAATTTCCCTAATGTCGTAACTGAAAATCTAATCCGAGTATCTAGCACTGTCTCAGATAGTGTTAAACTAACATCTGTTGATGTTGGAGAGGTTAAACTAACATATCCAGTTGGTTCGTCCTCAGAGATCTTAGGAAGCCTAGAGCCATCAGGAAAGAATGAGCATTTATGCTCAAGTGTCCCGTCCTTTGATGTTGACAGAACTACCGAGCCTTCCGAATCAGCTGCAGCAGATACAATGCAACCATCAGCTATGGTTGCGGCTTCTAATGGAAGTGACGGTTCACATTCTGTCTTTGGAAAATCAGCCAGCGAGAATGCAGACATATTCTCGGGATTGGAATGTCTTGACGATTATCTTACCCAAACTACAAGTGGTACAGAATTGCATTCGTACTGTCTGTTGATTGTTGGAAGCATTTATTTGCCTGCTTCCAGAAAGTCCCCTGAAAAGGCCAATAAGGGAAACTGTGGTGATCTGACACATTGTACTGTTGATTCTTCAGAATTCTTAGCATGTGATGTTGAAGAAGCTCAAACTGTTTCTGATTATTGTGCAACCCAAGATCCAGTATCCTGCACAGAAGCTGCTATATCCAATGAACATGGTGATATCCGGTTAGAAACAAAGCATCGAGTTGATTTAGGACGCCATGCTGGAAAATTTCAACCCAAGCTTAGAGTGAATAAAGGAAAAGAGAATCCAAACATCCCTCACTCTCAAGTTGAGTCCACCACACTTTCACAAGCTGCAAATTTCAAAACGGGTGAAATAGATGAGAGCTCACTTTGTACCATTCCGCCAGGAGATGTTCATTATCACATATCTCCCACTTTTGGTGATTATATAGCCCCAAATCCAACCCCCAATGTCCAAGCAAATGCAGAAAGCCTTGCAGAAACTACTCAGTTAGATGAGGCTGTTTTTGGGGATGCTTCCCATTCAGAGGGTGTTTGTGGGAGGGGTCATAAGAGTGGAAATGGAAAAGAGTCTACAGCATCAAATCGTCCTCAGAAGCGCATAGGTTCAGCAGCTGATGAGGAGGCTAAAGACGGGACATCATCCCAGAAGTCAAGGAAGCGGTTACCCCATCAACAAGTTGATGAGGCAGGGAACAATACTAATGAGGACAGCTTCATTACCGAAAATTCTAATGATTTTGATGGCAATGAAGATAAGGAGCATAATACAGAACGGAGAAAAAGAGCCCCAAGAAAGTCCAAGATAGCTGCATCTGAAAATGAAAAACCAGTTCAAAAGTGCAAAAGGACCAAGAAAGCACCTGATGAACCAACCGAAGAACTGACCAAAAAGAAGTTCTCCCATTCAACTCGTAGAAATAGAAGACATGGTAAACATAATTTCTGGGTGTCTATGATGAGTGCTTACGACAAGTTTCATAAGGAAGCTTCTGATAATGAAGAAAAGAACTTTGGTTTCGAACAGGACAGAAGCTCTGGTGGAGATCAAGCAGGTTGCAGGGATAGTGTTAACACAAGTTCCTCTAGCATCAATTACCAGTCTTTTATGAAGAAAGAACTCCGTGTAAAATGGAATGAACAAGACACGCAACTTTTGTATGAGGGTATTGAGCAGTTCGGATCCGATTTTAGAATGATCGCACTACTTTTTCCTGGTCGAACACGTGATCAAATCAAGTTGAAGTTCAAGAAGGAAGATCGTCACAATCGATTACGTATCAATGAAGCCTTTCCCGGTCGTTCCAAAGACAATTCCAAATATGTTTTGGTGATTAATGAGCTGCAAAAAGTTGCTCGGGAAAAGCAGGAGTCTAATGCAGATGAGTCGAATGACCAGGAGGAGGTAGAGCTGACTCATGATAACGATGTATGCATTTTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCCTTCTGCTATGCTGTTGCAATTTATTTGAGGATAAATAGTATGTTTCTTGGTGTCTGTAATCTGTATCCAGACCTCCACAAGAGTGCTTGCATATTGGCGGGAGTGACAAAACCTGAGTTGGATAAAATTGAAGATATGGAAACCGATGTTGCTGCTGAAGTTCAACAGCAGGAAGCTGCTGTTACTGAAGTTCATAGTCTCATGAAGTCTGATCAAAGTGATGATGGTGATAGTTTCGGCGGTTGGGATGATGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

743

Amino Acids

81.91

Weight (kDa)

5.36

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_7	PF15963	531 - 613	4.4e-23	Myb DNA-binding like
Myb_DNA-binding	PF00249	538 - 581	5.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1532
AccI	GTMKAC	2 cut(s)	38, 1061
AciI	CCGC	5 cut(s)	329, 869, 1150, 2069, 2211
AclWI	GGATC	3 cut(s)	629, 1665, 1678
AcsI	RAATTY	4 cut(s)	575, 731, 823, 1216
AcuI	CTGAAG	3 cut(s)	555, 2148, 2178
AcvI	CACGTG	1 cut(s)	1715
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	4 cut(s)	448, 464, 559, 862
AfiI	CCNNNNNNNGG	4 cut(s)	520, 905, 1015, 1891
AflIII	ACRYGT	1 cut(s)	1712
AgsI	TTSAA	9 cut(s)	596, 737, 829, 1325, 1398, 1732, 1738, 2102, 2135
AjnI	CCWGG	3 cut(s)	871, 1702, 1884
AjuI	GAANNNNNNNTTGG	4 cut(s)	1370, 1402, 1485, 1517
AleI	CACNNNNGTG	1 cut(s)	2052
Alw21I	GWGCWC	1 cut(s)	854
Alw26I	GTCTC	2 cut(s)	124, 2174
AlwI	GGATC	3 cut(s)	629, 1665, 1678
AlwNI	CAGNNNCTG	2 cut(s)	656, 1103
Ama87I	CYCGRG	2 cut(s)	400, 1845
AoxI	GGCC	2 cut(s)	17, 522
ApoI	RAATTY	4 cut(s)	575, 731, 823, 1216
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AseI	ATTAAT	1 cut(s)	1824
Asp700I	GAANNNNTTC	1 cut(s)	1779
AspLEI	GCGC	1 cut(s)	1089
AspS9I	GGNCC	2 cut(s)	18, 1338
AsuC2I	CCSGG	1 cut(s)	1785
AsuHPI	GGTGA	6 cut(s)	554, 689, 848, 920, 1831, 2210
AsuII	TTCGAA	1 cut(s)	1509
AvaI	CYCGRG	2 cut(s)	400, 1845
AvaII	GGWCC	1 cut(s)	1338
BamHI	GGATCC	1 cut(s)	1670
BanII	GRGCYC	2 cut(s)	854, 1279
BbrPI	CACGTG	1 cut(s)	1715
BbsI	GAAGAC	1 cut(s)	1420
Bbv12I	GWGCWC	1 cut(s)	854
BccI	CCATC	5 cut(s)	223, 322, 1167, 1226, 2189
BcgI	CGANNNNNNTGC	6 cut(s)	275, 309, 1857, 1891, 2105, 2139
BciT130I	CCWGG	3 cut(s)	873, 1704, 1886
BciVI	GTATCC	2 cut(s)	652, 2046
BclI	TGATCA	2 cut(s)	1717, 2182
BcnI	CCSGG	1 cut(s)	1785
BcoDI	GTCTC	2 cut(s)	124, 2174
BfaI	CTAG	4 cut(s)	54, 111, 209, 1575
BfmI	CTRYAG	2 cut(s)	294, 1062
BfuAI	ACCTGC	1 cut(s)	1532
BfuI	GTATCC	2 cut(s)	652, 2046
BglII	AGATCT	1 cut(s)	195
Bme1390I	CCNGG	4 cut(s)	873, 1704, 1785, 1886
Bme18I	GGWCC	1 cut(s)	1338
BmeT110I	CYCGRG	2 cut(s)	400, 1845
BmgT120I	GGNCC	2 cut(s)	18, 1338
BmiI	GGNNCC	1 cut(s)	1672
BmrFI	CCNGG	4 cut(s)	873, 1704, 1785, 1886
BmsI	GCATC	6 cut(s)	59, 709, 991, 1076, 1310, 1587
BpiI	GAAGAC	1 cut(s)	1420
Bpu14I	TTCGAA	1 cut(s)	1509
BpuEI	CTTGAG	2 cut(s)	226, 774
BpuMI	CCSGG	1 cut(s)	1785
Bsa29I	ATCGAT	1 cut(s)	1759
BsaAI	YACGTR	2 cut(s)	1715, 1766
BsaHI	GRCGYC	1 cut(s)	718
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	4 cut(s)	520, 905, 1015, 1891
Bse1I	ACTGG	4 cut(s)	176, 638, 1319, 1588
Bse3DI	GCAATG	1 cut(s)	1243
BseBI	CCWGG	3 cut(s)	873, 1704, 1886
BseCI	ATCGAT	1 cut(s)	1759
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	4 cut(s)	777, 1006, 1130, 2224
BseLI	CCNNNNNNNGG	4 cut(s)	520, 905, 1015, 1891
BseMI	GCAATG	1 cut(s)	1243
BseMII	CTCAG	5 cut(s)	135, 204, 989, 1094, 2076
BseNI	ACTGG	4 cut(s)	176, 638, 1319, 1588
BseRI	GAGGAG	2 cut(s)	1124, 1904
BsgI	GTGCAG	2 cut(s)	78, 631
Bsh1285I	CGRYCG	1 cut(s)	1789
BshFI	GGCC	2 cut(s)	19, 524
BshVI	ATCGAT	1 cut(s)	1759
BsiEI	CGRYCG	1 cut(s)	1789
BsiHKAI	GWGCWC	1 cut(s)	854
BsiHKCI	CYCGRG	2 cut(s)	400, 1845
BsiSI	CCGG	2 cut(s)	685, 1785
BslFI	GGGAC	3 cut(s)	233, 496, 1138
BslI	CCNNNNNNNGG	4 cut(s)	520, 905, 1015, 1891
BsmAI	GTCTC	2 cut(s)	124, 2174
BsmFI	GGGAC	3 cut(s)	233, 496, 1138
BsmI	GAATGC	2 cut(s)	391, 457
BsnI	GGCC	2 cut(s)	19, 524
BsoBI	CYCGRG	2 cut(s)	400, 1845
Bsp119I	TTCGAA	1 cut(s)	1509
Bsp1286I	GDGCHC	2 cut(s)	854, 1279
Bsp143I	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
BspACI	CCGC	5 cut(s)	329, 869, 1150, 2069, 2211
BspANI	GGCC	2 cut(s)	19, 524
BspCNI	CTCAG	5 cut(s)	134, 203, 988, 1093, 2077
BspDI	ATCGAT	1 cut(s)	1759
BspHI	TCATGA	2 cut(s)	1906, 2172
BspLI	GGNNCC	1 cut(s)	1672
BspMAI	CTGCAG	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	1532
BspPI	GGATC	3 cut(s)	629, 1665, 1678
BspT104I	TTCGAA	1 cut(s)	1509
BsrDI	GCAATG	1 cut(s)	1243
BsrI	ACTGG	4 cut(s)	176, 638, 1319, 1588
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
BssNI	GRCGYC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	873, 1704, 1886
Bst4CI	ACNGT	6 cut(s)	118, 350, 467, 539, 562, 610
BstACI	GRCGYC	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBAI	YACGTR	2 cut(s)	1715, 1766
BstBI	TTCGAA	1 cut(s)	1509
BstC8I	GCNNGC	4 cut(s)	7, 379, 498, 2059
BstDEI	CTNAG	8 cut(s)	121, 190, 199, 580, 746, 975, 1080, 2085
BstEII	GGTNACC	1 cut(s)	1152
BstF5I	GGATG	4 cut(s)	777, 1006, 1130, 2224
BstHHI	GCGC	1 cut(s)	1089
BstKTI	GATC	9 cut(s)	198, 547, 637, 1537, 1673, 1689, 1720, 1750, 2185
BstMAI	GTCTC	2 cut(s)	124, 2174
BstMBI	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
BstMCI	CGRYCG	1 cut(s)	1789
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 326
BstNI	CCWGG	3 cut(s)	873, 1704, 1886
BstNSI	RCATGY	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	1152
BstSCI	CCNGG	4 cut(s)	871, 1702, 1783, 1884
BstSFI	CTRYAG	2 cut(s)	294, 1062
BstSNI	TACGTA	1 cut(s)	1766
BstV2I	GAAGAC	1 cut(s)	1420
BstX2I	RGATCY	3 cut(s)	195, 634, 1670
BstYI	RGATCY	3 cut(s)	195, 634, 1670
Bsu15I	ATCGAT	1 cut(s)	1759
BsuI	GTATCC	2 cut(s)	652, 2046
BsuRI	GGCC	2 cut(s)	19, 524
BsuTUI	ATCGAT	1 cut(s)	1759
BtsCI	GGATG	4 cut(s)	777, 1006, 1130, 2224
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	1532
Cac8I	GCNNGC	4 cut(s)	7, 379, 498, 2059
CaiI	CAGNNNCTG	2 cut(s)	656, 1103
CciI	TCATGA	2 cut(s)	1906, 2172
CfoI	GCGC	1 cut(s)	1089
Cfr13I	GGNCC	2 cut(s)	18, 1338
ClaI	ATCGAT	1 cut(s)	1759
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	4 cut(s)	447, 463, 558, 861
CviAII	CATG	6 cut(s)	585, 674, 722, 1418, 1907, 2173
CviQI	GTAC	4 cut(s)	447, 463, 558, 861
DdeI	CTNAG	8 cut(s)	121, 190, 199, 580, 746, 975, 1080, 2085
DpnI	GATC	9 cut(s)	197, 546, 636, 1536, 1672, 1688, 1719, 1749, 2184
DpnII	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
EciI	GGCGGA	1 cut(s)	858
Ecl136II	GAGCTC	1 cut(s)	852
Eco105I	TACGTA	1 cut(s)	1766
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	854, 1279
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	1 cut(s)	1338
Eco53kI	GAGCTC	1 cut(s)	852
Eco57I	CTGAAG	3 cut(s)	555, 2148, 2178
Eco72I	CACGTG	1 cut(s)	1715
Eco88I	CYCGRG	2 cut(s)	400, 1845
Eco91I	GGTNACC	1 cut(s)	1152
EcoICRI	GAGCTC	1 cut(s)	852
EcoO65I	GGTNACC	1 cut(s)	1152
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	871, 1702, 1884
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	1925
EcoT38I	GRGCYC	2 cut(s)	854, 1279
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	6 cut(s)	588, 677, 725, 1421, 1910, 2176
FaqI	GGGAC	3 cut(s)	233, 496, 1138
FatI	CATG	6 cut(s)	584, 673, 721, 1417, 1906, 2172
FauI	CCCGC	1 cut(s)	2062
FbaI	TGATCA	2 cut(s)	1717, 2182
FblI	GTMKAC	2 cut(s)	38, 1061
FokI	GGATG	3 cut(s)	764, 1013, 1117
FriOI	GRGCYC	2 cut(s)	854, 1279
FspBI	CTAG	4 cut(s)	54, 111, 209, 1575
GlaI	GCGC	1 cut(s)	1088
HaeIII	GGCC	2 cut(s)	19, 524
HapII	CCGG	2 cut(s)	685, 1785
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	1 cut(s)	1089
Hin1I	GRCGYC	1 cut(s)	718
Hin1II	CATG	6 cut(s)	588, 677, 725, 1421, 1910, 2176
Hin6I	GCGC	1 cut(s)	1087
HinP1I	GCGC	1 cut(s)	1087
HincII	GTYRAC	2 cut(s)	265, 1561
HindII	GTYRAC	2 cut(s)	265, 1561
HindIII	AAGCTT	2 cut(s)	743, 1476
HinfI	GANTC	8 cut(s)	287, 566, 769, 797, 1058, 1859, 1874, 1903
HpaI	GTTAAC	1 cut(s)	1561
HpaII	CCGG	2 cut(s)	685, 1785
HphI	GGTGA	6 cut(s)	554, 689, 848, 920, 1831, 2210
Hpy166II	GTNNAC	7 cut(s)	39, 265, 353, 801, 1062, 1424, 1561
Hpy188III	TCNNGA	9 cut(s)	219, 402, 416, 504, 1738, 1847, 1907, 2039, 2173
Hpy8I	GTNNAC	7 cut(s)	39, 265, 353, 801, 1062, 1424, 1561
HpyAV	CCTTC	3 cut(s)	291, 1735, 1981
HpyCH4III	ACNGT	6 cut(s)	118, 350, 467, 539, 562, 610
HpyCH4IV	ACGT	2 cut(s)	1714, 1765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 326
HpyF3I	CTNAG	8 cut(s)	121, 190, 199, 580, 746, 975, 1080, 2085
HpySE526I	ACGT	2 cut(s)	1714, 1765
Hsp92I	GRCGYC	1 cut(s)	718
Hsp92II	CATG	6 cut(s)	588, 677, 725, 1421, 1910, 2176
HspAI	GCGC	1 cut(s)	1087
Ksp22I	TGATCA	2 cut(s)	1717, 2182
KspAI	GTTAAC	1 cut(s)	1561
Kzo9I	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
LmnI	GCTCC	1 cut(s)	1249
LweI	GCATC	6 cut(s)	59, 709, 991, 1076, 1310, 1587
MaeI	CTAG	4 cut(s)	54, 111, 209, 1575
MaeII	ACGT	2 cut(s)	1714, 1765
MaeIII	GTNAC	6 cut(s)	85, 344, 1152, 1751, 2074, 2152
MalI	GATC	9 cut(s)	197, 546, 636, 1536, 1672, 1688, 1719, 1749, 2184
MboI	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
MboII	GAAGA	9 cut(s)	561, 608, 1253, 1379, 1425, 1502, 1612, 1757, 2114
MflI	RGATCY	3 cut(s)	195, 634, 1670
MhlI	GDGCHC	2 cut(s)	854, 1279
MlyI	GAGTC	5 cut(s)	806, 1067, 1868, 1883, 1897
MmeI	TCCRAC	4 cut(s)	133, 460, 953, 2070
Mph1103I	ATGCAT	1 cut(s)	1925
MroXI	GAANNNNTTC	1 cut(s)	1779
MseI	TTAA	5 cut(s)	69, 132, 162, 1560, 1824
MslI	CAYNNNNRTG	2 cut(s)	1041, 2052
MspA1I	CMGCKG	3 cut(s)	62, 293, 1103
MspI	CCGG	2 cut(s)	685, 1785
MspR9I	CCNGG	4 cut(s)	873, 1704, 1785, 1886
Mva1269I	GAATGC	2 cut(s)	391, 457
MvaI	CCWGG	3 cut(s)	873, 1704, 1886
MwoI	GCNNNNNNNGC	2 cut(s)	56, 326
NciI	CCSGG	1 cut(s)	1785
NdeII	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
NlaIII	CATG	6 cut(s)	588, 677, 725, 1421, 1910, 2176
NlaIV	GGNNCC	1 cut(s)	1672
NmuCI	GTSAC	3 cut(s)	344, 1751, 2074
NsiI	ATGCAT	1 cut(s)	1925
NspI	RCATGY	1 cut(s)	588
NspV	TTCGAA	1 cut(s)	1509
OliI	CACNNNNGTG	1 cut(s)	2052
PagI	TCATGA	2 cut(s)	1906, 2172
PcsI	WCGNNNNNNNCGW	1 cut(s)	1756
PctI	GAATGC	2 cut(s)	391, 457
PdmI	GAANNNNTTC	1 cut(s)	1779
PfeI	GAWTC	3 cut(s)	287, 566, 769
PleI	GAGTC	5 cut(s)	805, 1066, 1867, 1882, 1897
PmaCI	CACGTG	1 cut(s)	1715
PmlI	CACGTG	1 cut(s)	1715
PpsI	GAGTC	5 cut(s)	805, 1066, 1867, 1882, 1897
Ppu21I	YACGTR	2 cut(s)	1715, 1766
PshBI	ATTAAT	1 cut(s)	1824
Psp124BI	GAGCTC	1 cut(s)	854
Psp6I	CCWGG	3 cut(s)	871, 1702, 1884
PspCI	CACGTG	1 cut(s)	1715
PspEI	GGTNACC	1 cut(s)	1152
PspGI	CCWGG	3 cut(s)	871, 1702, 1884
PspN4I	GGNNCC	1 cut(s)	1672
PspPI	GGNCC	2 cut(s)	18, 1338
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	2 cut(s)	656, 1103
PsuI	RGATCY	3 cut(s)	195, 634, 1670
PvuII	CAGCTG	3 cut(s)	62, 293, 1103
RsaI	GTAC	4 cut(s)	448, 464, 559, 862
RsaNI	GTAC	4 cut(s)	447, 463, 558, 861
RseI	CAYNNNNRTG	2 cut(s)	1041, 2052
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	5 cut(s)	69, 132, 162, 1560, 1824
Sau3AI	GATC	9 cut(s)	195, 544, 634, 1534, 1670, 1686, 1717, 1747, 2182
Sau96I	GGNCC	2 cut(s)	18, 1338
SchI	GAGTC	5 cut(s)	806, 1067, 1868, 1883, 1897
ScrFI	CCNGG	4 cut(s)	873, 1704, 1785, 1886
SduI	GDGCHC	2 cut(s)	854, 1279
SfaNI	GCATC	6 cut(s)	59, 709, 991, 1076, 1310, 1587
SfcI	CTRYAG	2 cut(s)	294, 1062
SfuI	TTCGAA	1 cut(s)	1509
SinI	GGWCC	1 cut(s)	1338
SmiMI	CAYNNNNRTG	2 cut(s)	1041, 2052
SmlI	CTYRAG	2 cut(s)	241, 789
SmoI	CTYRAG	2 cut(s)	241, 789
SnaBI	TACGTA	1 cut(s)	1766
SsiI	CCGC	5 cut(s)	329, 869, 1150, 2069, 2211
SspMI	CTAG	4 cut(s)	54, 111, 209, 1575
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	4 cut(s)	871, 1702, 1783, 1884
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	6 cut(s)	118, 350, 467, 539, 562, 610
TaiI	ACGT	2 cut(s)	1717, 1768
TaqI	TCGA	5 cut(s)	703, 1509, 1708, 1759, 1877
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	287, 566, 769
Tru1I	TTAA	5 cut(s)	69, 132, 162, 1560, 1824
Tru9I	TTAA	5 cut(s)	69, 132, 162, 1560, 1824
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	3 cut(s)	344, 1751, 2074
Tsp45I	GTSAC	3 cut(s)	344, 1751, 2074
TspGWI	ACGGA	2 cut(s)	1279, 1601
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	1338
VspI	ATTAAT	1 cut(s)	1824
XapI	RAATTY	4 cut(s)	575, 731, 823, 1216
XceI	RCATGY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	440, 1813
XmiI	GTMKAC	2 cut(s)	38, 1061
XmnI	GAANNNNTTC	1 cut(s)	1779
XspI	CTAG	4 cut(s)	54, 111, 209, 1575
Zsp2I	ATGCAT	1 cut(s)	1925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.