Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Forward (+)

32882918 .. 32883385

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGCTCATCAAGATTATGCTAATCATAGCAACAACCATGGCTTTGTCCATCACTCTCATGACCGTGAACAGGGCCGGTCGTGAAGCAGAAGAGAAACCCTCTTTCGTGTCGGAAGAGCACCCCCTCTACGACGAGAAAAATCTGCTTCTGCCTTCGAAAAGGGTGAGTCGTTTCCTGGCTGAGACTAAAAACCCTAGAGCAGCCGACCATTGCAACAAGGACAACGAGATCTGCGCCTACTTGGCAGACAGCTACACGAACTCGACATGCTGCAACAACAAGTGCATGGACTTGTCCGAGGACAAGCACAACTGCGGCGCCTGCAAGAAGAAATGCAAGTACACTGAGACGTGCTGCAGAGGAGGCTGCGTTGACACGAATTTCGATAAGAGGCACTGTGGAGGCTGCAACCAGCGGTGCCAAAAAGGCCAGTATTGTGTGTACGGCCTGTGTAACTATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

155

Amino Acids

17.46

Weight (kDa)

8.11

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	70 - 155	1.9e-28	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	320, 420
AciI	CCGC	2 cut(s)	318, 418
AcsI	RAATTY	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	2 cut(s)	344, 446
AfiI	CCNNNNNNNGG	1 cut(s)	72
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	7, 255
AluI	AGCT	2 cut(s)	7, 255
Alw21I	GWGCWC	2 cut(s)	9, 123
Alw26I	GTCTC	2 cut(s)	179, 344
AoxI	GGCC	3 cut(s)	75, 430, 448
ApeKI	GCWGC	5 cut(s)	203, 273, 357, 369, 408
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	2 cut(s)	239, 323
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	320, 420
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 123
BbvI	GCAGC	5 cut(s)	215, 260, 344, 356, 395
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	179, 344
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	324
BglI	GCCNNNNNGGC	2 cut(s)	245, 429
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	6 cut(s)	204, 274, 319, 358, 370, 409
BlsI	GCNGC	6 cut(s)	205, 275, 320, 359, 371, 410
Bme1390I	CCNGG	1 cut(s)	179
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	322, 422
BmrFI	CCNGG	1 cut(s)	179
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu14I	TTCGAA	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	39, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	39, 300
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	174, 339
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	5 cut(s)	215, 260, 344, 356, 395
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	77, 432, 450
BshNI	GGYRCC	2 cut(s)	320, 420
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	9, 123
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	179, 344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	77, 432, 450
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	9, 123
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	318, 418
BspANI	GGCC	3 cut(s)	77, 432, 450
BspCNI	CTCAG	2 cut(s)	175, 340
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	322, 422
BspMAI	CTGCAG	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	320, 420
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	39, 300
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	67, 401
Bst6I	CTCTTC	2 cut(s)	87, 111
BstACI	GRCGYC	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	183, 348
BstDSI	CCRYGG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	239, 323
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	179, 344
BstMBI	GATC	1 cut(s)	231
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 324, 366, 429
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	215, 260, 344, 356, 395
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	77, 432, 450
BtgI	CCRYGG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	345, 397
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	2 cut(s)	239, 323
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	343, 445
CviAII	CATG	4 cut(s)	40, 61, 270, 289
CviQI	GTAC	2 cut(s)	343, 445
DdeI	CTNAG	2 cut(s)	183, 348
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	87, 111
EarI	CTCTTC	2 cut(s)	87, 111
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	4 cut(s)	43, 64, 273, 292
FaiI	YATR	7 cut(s)	20, 29, 41, 62, 271, 290, 462
FatI	CATG	4 cut(s)	39, 60, 269, 288
Fnu4HI	GCNGC	6 cut(s)	204, 274, 319, 358, 370, 409
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	6 cut(s)	204, 274, 319, 358, 370, 409
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	238, 322
GluI	GCNGC	6 cut(s)	204, 274, 319, 358, 370, 409
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	77, 432, 450
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	239, 323
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	43, 64, 273, 292
Hin6I	GCGC	2 cut(s)	237, 321
HinP1I	GCGC	2 cut(s)	237, 321
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	70, 345, 376, 445
Hpy188I	TCNGA	2 cut(s)	115, 301
Hpy188III	TCNNGA	3 cut(s)	13, 61, 83
Hpy8I	GTNNAC	4 cut(s)	70, 345, 376, 445
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	67, 401
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	7 cut(s)	216, 276, 288, 327, 339, 360, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 324, 366, 429
HpyF3I	CTNAG	2 cut(s)	183, 348
HpySE526I	ACGT	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	43, 64, 273, 292
HspAI	GCGC	2 cut(s)	237, 321
KasI	GGCGCC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	58, 91, 164, 191, 337, 428, 446, 464
Lsp1109I	GCAGC	5 cut(s)	215, 260, 344, 356, 395
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	104, 128, 343
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	9, 123
MluCI	AATT	1 cut(s)	382
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	7 cut(s)	112, 137, 295, 356, 359, 387, 398
MslI	CAYNNNNRTG	2 cut(s)	59, 65
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	245, 324, 366, 429
NarI	GGCGCC	1 cut(s)	321
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	4 cut(s)	43, 64, 273, 292
NlaIV	GGNNCC	2 cut(s)	322, 422
NspI	RCATGY	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	158
PagI	TCATGA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	205, 275, 320, 359, 371, 410
PleI	GAGTC	1 cut(s)	177
PluTI	GGCGCC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	322, 422
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	344, 446
RsaNI	GTAC	2 cut(s)	343, 445
RseI	CAYNNNNRTG	2 cut(s)	59, 65
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	6 cut(s)	204, 274, 319, 358, 370, 409
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	9, 123
SetI	ASST	3 cut(s)	9, 257, 356
SfcI	CTRYAG	1 cut(s)	358
SfoI	GGCGCC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	59, 65
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	318, 418
SspDI	GGCGCC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	67, 401
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	3 cut(s)	158, 266, 387
TasI	AATT	1 cut(s)	382
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	321
TscAI	CASTG	2 cut(s)	352, 404
TseI	GCWGC	5 cut(s)	203, 273, 357, 369, 408
TspRI	CASTG	2 cut(s)	352, 404
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.