Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001031

Physical Location & Seq

Genomic Coordinates Reverse (-)

32866025 .. 32878509

Gene Structure 12485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGCTCTCCAACTCCATGGAGTTCAGACCTCGCAATTACACTGCCGAGAAACAAGCCCACGCGCTTCCTCGATCACGCGCCGACGATCATCCTCTCTCCGCTCCATCGTCTCCACCTCGCCACCAGGTTGAGGTTGTTGATGATGGGGGCACCGACTATCTTGACCCGCTCAGAAGGTCAGATAACAATGCAGCAGTTTCTATAGAGGATTTGGAAGGCATTGAAGACAGTTCTGCTTCGGGACTCTCCAGTGAAGCTTCGATTCAAAATCCATCAAAAGAATGGGTCTCTTTTAAGAGGTCACTGATGCAGCGGTTTCCGGTCTCCAAAACCGTTTTGACTTCTTCAATGTCTGATGTGATAGTGAAAGGCAGAAAAACATATGACAAATCTTCAACAAATATGCATTTGGAGGAACTGGAAGATCCAGAAAAATTTGCAGAAGAGGGTGGCAAAGTCATCACAGGACAGGAATATGTTTCCCGGTTACACGAGCTCAAAGCTGAAATAAATCACACTTGGCATGCTGATGATCGTGTGACATCTTTGAAATTATCAATAAAAGTAGCTAAGCTTTTGATGGATACATCTATTTTACAATGTTATCCTACACTTTTTGTTCTTGCTACGGATATTATGGATATGCTTGGGGATATGGTGTGGGAACGCATCAAGTTGAAAGCTGAATTAGCTGAAGATGGAACCAAACTCTGCTTGTTACCAGAGAACTTCATGGTGAGTGATATTTGCTCCGATGCCAAAGAAACTTGCAATAATTGGTTCAGCAAAATTGGTGCAATCCGAGAGCTTCTTCCACGTATTTATTTGGAGCTCGCATTATTGCCTTGCTGGCGTTTCTTGCATGATCGACCTCTAGACTGTCTTCAGCGCTTGGTAATGATGACAAGAGGGTTAGCAGATCCATTGGCATCTGCCTACTGTCGCTTGTATATGGCCCATTGTTTTAGAAAGTTGCACTCTCATGATATAGGATGTCTGCTCACCTGCGTGAATGACTTCAAAATTTTGTTGATGCGGGTGATATCGGCAAAGGAAACATTTCACAGAAACTTGACTGAAAACAAAAGATTGCTTATCAGTCTAATGGAACCAACCATTGATTATATCATGAAATGCATATTTAAAAATGTGTCCGAGAGACAAGTAAATGATGTACTAGTGGAGCTTGGGCTTGGATCTAATCAAGTGGAGCTGCGTGGAAGGTTCCCATGCGCCTCAATTATCCTTCATCATCTAGTCAAGCAACTTCCATCGCAAGTAGTTAGCTCAAGTGCTATGGAGATCATTCAGCTCATTGAGTCCAGCAATGATGATTCCTATGATCAGTGCTTGAATTACAGGTTACTTGGATTTAGGCTGTGTGAAAGAAAATCTGAAATGGGCACTGTCAATGCTGTGGTGGACAAAGTCATTCAGGTTATTACTCAATATGAAGGCCTTGATGAGTACTTGAAGGTTGTGGATGCTTATGTGGACATTTTCCTTCAAAATCATATGGATGACCACCTGAACTCCATTTTGGAAGGTATTTCAAACCGAGCATGCAGTCAAGGGATTGCTGAAGATGAACTGACGACCTTGCAGTCTATCTTGGTGAAGCTTCTTTCTTATTACGAGGATTTACAAGACGTAATTGCTATGACCCCTTTTATGAAGATCTTGGATTTAATGCGTGGAAGTTCACAAAGCATCGTCAATATGCAGATCCTTGACATGGGGATAAGGAATGGTTGTATATGTGATCGGACAACTATACAGTTTCTTTTTGAAATTTCCCAGGCTCTACATGATGATGAAATTTTTGTGAATGTAAAAGATGATTCTAACCAAGCAGCACGTTTGATTTCTTCTTTTGTCTCACTGGTTGATTATGGGGCAGAGTTGGAAAGTCATTTGACCTTCTTAGTTGAATGCCGTGCAGCTTTTGGTAGCATACACTGGCTTAAGGAAACTCTTGTTCGCTCGAGTAATTGTTTAGCAATTAAGGCTCTGAAAGATGGGAATAGACATATCAGTTTTATCAAATCCTGCGTAGCATTTTCTGAAGTCACATTACCTTCTATTTCAGCTCAGACTAAGCAGTTAAATCTGTATCTTGAGACTGCAGAGGTAGCCTTACTTGGTGGTCTAGTTTCTCATTCAGATGGACTGATTGACTCAGCAATCAACTCTTTGCAAATTTCAGAAGCGATGGATGGGTCCAGAACACCAATTGATGCTGATGGAATACTCTCCTCAATTCAAAAGTTATTCAGCCTCTTGGTTATGGTTCCAGGTAATCCTGAGCATGGAGTTACTTTCTATCCAAAGAACTTGGTATCGCTTGTAAATTCTCAGCCTTGGATGACACCAAGAATGAGAGTGAAGATTTTTTGTGCAGTTGTTTCTCTGTTAGCGGCACTATCTCAACGAGATCTGCCTTATCATGCAGATAAGGGAAAGCTTTTAGGAAACGACATACTGTTCTTTGGTCATTCATCGTATTTAAGTGAGCTTGCGTTGATGTGCAAGTTTGTTCTTCAGAACCTGGTTGATACTATTCAACAAGAACCTTCCAAGGCTGCTCGTGGAAGTATGGCGCTTGAAGCTTGCAACTGCATTGCATCATCTTTCATTCCAAGTCAGGAAATATCCTCAATTTGCTCCAATCTAATAGAAACTGGGAAATCGTGTATGGGCACTAGCCACCCGTATCTGCTATCGACGATCAAATTTATGGATCACTTGCTGGTTCCATCTGTTGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_7

Protein Analysis

923

Amino Acids

103.23

Weight (kDa)

5.47

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39160 AT4G39160 AT4G39160
fragaria_vesca	FvH4_2g03360 FvH4_2g03400 FvH4_2g09510 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520 FvH4_2g09520
malus_domestica	MD10G1070200.v1.1
prunus_persica	Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1 Prupe.8G091800_v2.0.a1
pyrus_communis	pycom05g05400 pycom10g05580 pycom10g05590 pycom16g11070
rosa_chinensis	RchiOBHm_Chr5g0054461 RchiOBHm_Chr6g0265811 RchiOBHm_Chr6g0265821
rosa_laevigata	RLG00000014156 RLG00000034933
rosa_multiflora	Rmu_co8502449.1_g000001 Rmu_sc0000208.1_g000038 Rmu_sc0000208.1_g000039 Rmu_sc0005705.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026430 Rroxscaffold_7G00202350 Rroxscaffold_7G00202360
rosa_rugosa	Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286200 Rorug05G0286300 Rorug05G0286400 Rorug06G0019900
rosa_samantha	Rh5AG356700 Rh5BG368400 Rh5BG368600 Rh5CG391800 Rh5DG382600 Rh6AG141900 Rh6AG142000 Rh6BG141800 Rh6BG141900 Rh6CG138400 Rh6CG138500 Rh6DG125500 Rh6DG125600
rosa_wichuraiana	Rw5G033520 Rw5G033690 Rw6G012260 Rw6G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1013
AasI	GACNNNNNNGTC	1 cut(s)	1603
Acc36I	ACCTGC	1 cut(s)	1013
AccB1I	GGYRCC	1 cut(s)	149
AccBSI	CCGCTC	2 cut(s)	101, 169
AccII	CGCG	2 cut(s)	62, 78
AciI	CCGC	5 cut(s)	99, 167, 313, 1036, 2417
AclWI	GGATC	5 cut(s)	419, 914, 1204, 1720, 2748
AcsI	RAATTY	7 cut(s)	434, 1023, 1791, 1818, 2199, 2350, 2732
AcuI	CTGAAG	5 cut(s)	714, 869, 1602, 2085, 2525
AfaI	GTAC	2 cut(s)	1176, 1469
AfeI	AGCGCT	1 cut(s)	890
AfiI	CCNNNNNNNGG	3 cut(s)	130, 1735, 2309
AflII	CTTAAG	1 cut(s)	1964
AhlI	ACTAGT	1 cut(s)	1177
AjnI	CCWGG	4 cut(s)	123, 1797, 2293, 2547
AjuI	GAANNNNNNNTTGG	2 cut(s)	1523, 1555
AleI	CACNNNNGTG	1 cut(s)	1007
Alw21I	GWGCWC	2 cut(s)	498, 834
Alw26I	GTCTC	6 cut(s)	114, 292, 328, 1153, 1882, 2114
AlwI	GGATC	5 cut(s)	419, 914, 1204, 1720, 2748
AlwNI	CAGNNNCTG	1 cut(s)	2548
Ama87I	CYCGRG	1 cut(s)	1984
Aor51HI	AGCGCT	1 cut(s)	890
AoxI	GGCC	2 cut(s)	954, 1456
ApeKI	GCWGC	6 cut(s)	191, 310, 1213, 1853, 1940, 2582
ApoI	RAATTY	7 cut(s)	434, 1023, 1791, 1818, 2199, 2350, 2732
Asp700I	GAANNNNTTC	2 cut(s)	1016, 1059
AspLEI	GCGC	5 cut(s)	64, 80, 891, 1235, 2602
AspS9I	GGNCC	2 cut(s)	955, 2220
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	4 cut(s)	748, 994, 1051, 1627
AvaI	CYCGRG	1 cut(s)	1984
AvaII	GGWCC	1 cut(s)	2220
BaeGI	GKGCMC	3 cut(s)	152, 1406, 2702
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	498, 834
BarI	GAAGNNNNNNTAC	2 cut(s)	2058, 2090
BauI	CACGAG	2 cut(s)	491, 2586
BbsI	GAAGAC	2 cut(s)	231, 875
Bbv12I	GWGCWC	2 cut(s)	498, 834
BbvI	GCAGC	6 cut(s)	203, 322, 1200, 1865, 1952, 2569
BceAI	ACGGC	1 cut(s)	1920
BciT130I	CCWGG	4 cut(s)	125, 1799, 2295, 2549
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	1 cut(s)	1342
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	6 cut(s)	114, 292, 328, 1153, 1882, 2114
BcuI	ACTAGT	1 cut(s)	1177
BfaI	CTAG	5 cut(s)	875, 1178, 1256, 2150, 2703
BfmI	CTRYAG	2 cut(s)	201, 2124
BfoI	RGCGCY	2 cut(s)	892, 2603
BfrI	CTTAAG	1 cut(s)	1964
BfuAI	ACCTGC	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	850
BglII	AGATCT	2 cut(s)	1677, 2434
BisI	GCNGC	7 cut(s)	192, 311, 1214, 1854, 1941, 2418, 2583
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	7 cut(s)	193, 312, 1215, 1855, 1942, 2419, 2584
BmcAI	AGTACT	1 cut(s)	1469
Bme1390I	CCNGG	5 cut(s)	125, 484, 1799, 2295, 2549
Bme18I	GGWCC	1 cut(s)	2220
BmeT110I	CYCGRG	1 cut(s)	1984
BmgT120I	GGNCC	2 cut(s)	955, 2220
BmiI	GGNNCC	7 cut(s)	151, 703, 1110, 1226, 2221, 2292, 2754
BmrFI	CCNGG	5 cut(s)	125, 484, 1799, 2295, 2549
BmrI	ACTGGG	1 cut(s)	2691
BmsI	GCATC	9 cut(s)	297, 678, 745, 938, 1023, 1474, 1719, 2227, 2633
BmuI	ACTGGG	1 cut(s)	2691
BpiI	GAAGAC	2 cut(s)	231, 875
BpmI	CTGGAG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	2304
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	1273, 2138
BpuMI	CCSGG	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	818
BsaI	GGTCTC	2 cut(s)	292, 328
BsaJI	CCNNGG	4 cut(s)	15, 1797, 2360, 2577
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	1517, 1547
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 1735, 2309
Bse1I	ACTGG	5 cut(s)	249, 423, 1887, 1964, 2686
Bse3DI	GCAATG	2 cut(s)	1333, 2619
BseBI	CCWGG	4 cut(s)	125, 1799, 2295, 2549
BseDI	CCNNGG	4 cut(s)	15, 1797, 2360, 2577
BseGI	GGATG	6 cut(s)	88, 998, 1489, 1525, 2221, 2370
BseLI	CCNNNNNNNGG	3 cut(s)	130, 1735, 2309
BseMI	GCAATG	2 cut(s)	1333, 2619
BseMII	CTCAG	5 cut(s)	184, 2105, 2193, 2295, 2369
BseNI	ACTGG	5 cut(s)	249, 423, 1887, 1964, 2686
BseRI	GAGGAG	1 cut(s)	2245
BseSI	GKGCMC	3 cut(s)	152, 1406, 2702
BseXI	GCAGC	6 cut(s)	203, 322, 1200, 1865, 1952, 2569
BsgI	GTGCAG	2 cut(s)	1959, 2418
Bsh1236I	CGCG	2 cut(s)	62, 78
BshFI	GGCC	2 cut(s)	956, 1458
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	498, 834
BsiHKCI	CYCGRG	1 cut(s)	1984
BsiSI	CCGG	2 cut(s)	320, 484
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	130, 1735, 2309
BsmAI	GTCTC	6 cut(s)	114, 292, 328, 1153, 1882, 2114
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	1937
BsnI	GGCC	2 cut(s)	956, 1458
Bso31I	GGTCTC	2 cut(s)	292, 328
BsoBI	CYCGRG	1 cut(s)	1984
Bsp1286I	GDGCHC	5 cut(s)	152, 498, 834, 1406, 2702
Bsp1720I	GCTNAGC	1 cut(s)	570
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	5 cut(s)	99, 167, 313, 1036, 2417
BspANI	GGCC	2 cut(s)	956, 1458
BspCNI	CTCAG	5 cut(s)	183, 2104, 2192, 2296, 2368
BspFNI	CGCG	2 cut(s)	62, 78
BspHI	TCATGA	2 cut(s)	982, 1128
BspLI	GGNNCC	7 cut(s)	151, 703, 1110, 1226, 2221, 2292, 2754
BspMAI	CTGCAG	1 cut(s)	2128
BspMI	ACCTGC	1 cut(s)	1013
BspPI	GGATC	5 cut(s)	419, 914, 1204, 1720, 2748
BspT107I	GGYRCC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	1964
BspTNI	GGTCTC	2 cut(s)	292, 328
BsrBI	CCGCTC	2 cut(s)	101, 169
BsrDI	GCAATG	2 cut(s)	1333, 2619
BsrI	ACTGG	5 cut(s)	249, 423, 1887, 1964, 2686
BssECI	CCNNGG	4 cut(s)	15, 1797, 2360, 2577
BssSI	CACGAG	2 cut(s)	491, 2586
BssT1I	CCWWGG	3 cut(s)	15, 2360, 2577
Bst2BI	CACGAG	2 cut(s)	491, 2586
Bst2UI	CCWGG	4 cut(s)	125, 1799, 2295, 2549
Bst4CI	ACNGT	7 cut(s)	230, 334, 881, 941, 1408, 1779, 2484
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	1964
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	6 cut(s)	525, 834, 851, 1564, 2517, 2611
BstDEI	CTNAG	8 cut(s)	170, 570, 1924, 2091, 2097, 2179, 2304, 2355
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	6 cut(s)	88, 998, 1489, 1525, 2221, 2370
BstFNI	CGCG	2 cut(s)	62, 78
BstH2I	RGCGCY	2 cut(s)	892, 2603
BstHHI	GCGC	5 cut(s)	64, 80, 891, 1235, 2602
BstMAI	GTCTC	6 cut(s)	114, 292, 328, 1153, 1882, 2114
BstMWI	GCNNNNNNNGC	6 cut(s)	689, 850, 859, 2006, 2132, 2606
BstNI	CCWGG	4 cut(s)	125, 1799, 2295, 2549
BstNSI	RCATGY	2 cut(s)	527, 1566
BstSCI	CCNGG	5 cut(s)	123, 482, 1797, 2293, 2547
BstSFI	CTRYAG	2 cut(s)	201, 2124
BstSLI	GKGCMC	3 cut(s)	152, 1406, 2702
BstUI	CGCG	2 cut(s)	62, 78
BstV1I	GCAGC	6 cut(s)	203, 322, 1200, 1865, 1952, 2569
BstV2I	GAAGAC	2 cut(s)	231, 875
BstX2I	RGATCY	6 cut(s)	424, 919, 1196, 1677, 1725, 2434
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	6 cut(s)	424, 919, 1196, 1677, 1725, 2434
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	956, 1458
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	2 cut(s)	1257, 2225
BtsCI	GGATG	6 cut(s)	88, 998, 1489, 1525, 2221, 2370
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	7 cut(s)	39, 256, 302, 1352, 1404, 1880, 1957
BveI	ACCTGC	1 cut(s)	1013
Cac8I	GCNNGC	6 cut(s)	525, 834, 851, 1564, 2517, 2611
CaiI	CAGNNNCTG	1 cut(s)	2548
CciI	TCATGA	2 cut(s)	982, 1128
CfoI	GCGC	5 cut(s)	64, 80, 891, 1235, 2602
Cfr13I	GGNCC	2 cut(s)	955, 2220
CsiI	ACCWGGT	2 cut(s)	123, 2547
Csp6I	GTAC	2 cut(s)	1175, 1468
CviQI	GTAC	2 cut(s)	1175, 1468
DdeI	CTNAG	8 cut(s)	170, 570, 1924, 2091, 2097, 2179, 2304, 2355
DraI	TTTAAA	1 cut(s)	1144
DrdI	GACNNNNNNGTC	1 cut(s)	1603
DseDI	GACNNNNNNGTC	1 cut(s)	1603
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	2 cut(s)	496, 832
Eco130I	CCWWGG	3 cut(s)	15, 2360, 2577
Eco147I	AGGCCT	1 cut(s)	1458
Eco24I	GRGCYC	2 cut(s)	498, 834
Eco31I	GGTCTC	2 cut(s)	292, 328
Eco32I	GATATC	1 cut(s)	1044
Eco47I	GGWCC	1 cut(s)	2220
Eco47III	AGCGCT	1 cut(s)	890
Eco53kI	GAGCTC	2 cut(s)	496, 832
Eco57I	CTGAAG	5 cut(s)	714, 869, 1602, 2085, 2525
Eco88I	CYCGRG	1 cut(s)	1984
EcoICRI	GAGCTC	2 cut(s)	496, 832
EcoRII	CCWGG	4 cut(s)	123, 1797, 2293, 2547
EcoRV	GATATC	1 cut(s)	1044
EcoT14I	CCWWGG	3 cut(s)	15, 2360, 2577
EcoT22I	ATGCAT	2 cut(s)	408, 1139
EcoT38I	GRGCYC	2 cut(s)	498, 834
ErhI	CCWWGG	3 cut(s)	15, 2360, 2577
Esp3I	CGTCTC	1 cut(s)	114
FaqI	GGGAC	1 cut(s)	255
FauI	CCCGC	2 cut(s)	174, 1029
FauNDI	CATATG	2 cut(s)	382, 1515
FbaI	TGATCA	1 cut(s)	1342
Fnu4HI	GCNGC	7 cut(s)	192, 311, 1214, 1854, 1941, 2418, 2583
FokI	GGATG	6 cut(s)	75, 1005, 1496, 1532, 2228, 2377
FriOI	GRGCYC	2 cut(s)	498, 834
Fsp4HI	GCNGC	7 cut(s)	192, 311, 1214, 1854, 1941, 2418, 2583
FspBI	CTAG	5 cut(s)	875, 1178, 1256, 2150, 2703
GlaI	GCGC	5 cut(s)	63, 79, 890, 1234, 2601
GluI	GCNGC	7 cut(s)	192, 311, 1214, 1854, 1941, 2418, 2583
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	2 cut(s)	892, 2603
HaeIII	GGCC	2 cut(s)	956, 1458
HapII	CCGG	2 cut(s)	320, 484
HhaI	GCGC	5 cut(s)	64, 80, 891, 1235, 2602
Hin6I	GCGC	5 cut(s)	62, 78, 889, 1233, 2600
HinP1I	GCGC	5 cut(s)	62, 78, 889, 1233, 2600
HindIII	AAGCTT	5 cut(s)	255, 572, 1619, 2462, 2607
HinfI	GANTC	6 cut(s)	243, 262, 1319, 1334, 1841, 2177
HpaII	CCGG	2 cut(s)	320, 484
HphI	GGTGA	4 cut(s)	748, 994, 1051, 1627
Hpy166II	GTNNAC	3 cut(s)	1423, 1495, 1703
Hpy8I	GTNNAC	3 cut(s)	1423, 1495, 1703
Hpy99I	CGWCG	2 cut(s)	86, 2728
HpyCH4III	ACNGT	7 cut(s)	230, 334, 881, 941, 1408, 1779, 2484
HpyCH4IV	ACGT	3 cut(s)	817, 1650, 1858
HpyF10VI	GCNNNNNNNGC	6 cut(s)	689, 850, 859, 2006, 2132, 2606
HpyF3I	CTNAG	8 cut(s)	170, 570, 1924, 2091, 2097, 2179, 2304, 2355
HpySE526I	ACGT	3 cut(s)	817, 1650, 1858
HspAI	GCGC	5 cut(s)	62, 78, 889, 1233, 2600
Ksp22I	TGATCA	1 cut(s)	1342
LmnI	GCTCC	6 cut(s)	106, 755, 829, 1183, 1210, 2669
Lsp1109I	GCAGC	6 cut(s)	203, 322, 1200, 1865, 1952, 2569
LweI	GCATC	9 cut(s)	297, 678, 745, 938, 1023, 1474, 1719, 2227, 2633
MabI	ACCWGGT	2 cut(s)	123, 2547
MaeI	CTAG	5 cut(s)	875, 1178, 1256, 2150, 2703
MaeII	ACGT	3 cut(s)	817, 1650, 1858
MaeIII	GTNAC	7 cut(s)	300, 486, 538, 717, 1362, 2068, 2314
MbiI	CCGCTC	2 cut(s)	101, 169
MfeI	CAATTG	1 cut(s)	2232
MflI	RGATCY	6 cut(s)	424, 919, 1196, 1677, 1725, 2434
MhlI	GDGCHC	5 cut(s)	152, 498, 834, 1406, 2702
MlyI	GAGTC	3 cut(s)	237, 1328, 2171
MmeI	TCCRAC	2 cut(s)	33, 1884
Mph1103I	ATGCAT	2 cut(s)	408, 1139
MroXI	GAANNNNTTC	2 cut(s)	1016, 1059
MseI	TTAA	7 cut(s)	294, 1143, 1688, 1965, 2004, 2105, 2507
MslI	CAYNNNNRTG	6 cut(s)	528, 981, 1007, 1518, 1812, 2163
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	1964
MspI	CCGG	2 cut(s)	320, 484
MspR9I	CCNGG	5 cut(s)	125, 484, 1799, 2295, 2549
MunI	CAATTG	1 cut(s)	2232
Mva1269I	GAATGC	1 cut(s)	1937
MvaI	CCWGG	4 cut(s)	125, 1799, 2295, 2549
MvnI	CGCG	2 cut(s)	62, 78
MwoI	GCNNNNNNNGC	6 cut(s)	689, 850, 859, 2006, 2132, 2606
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	2 cut(s)	382, 1515
NlaIV	GGNNCC	7 cut(s)	151, 703, 1110, 1226, 2221, 2292, 2754
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	3 cut(s)	300, 538, 2068
NsiI	ATGCAT	2 cut(s)	408, 1139
NspI	RCATGY	2 cut(s)	527, 1566
OliI	CACNNNNGTG	1 cut(s)	1007
PaeI	GCATGC	2 cut(s)	527, 1566
PaeR7I	CTCGAG	1 cut(s)	1984
PagI	TCATGA	2 cut(s)	982, 1128
PaqCI	CACCTGC	1 cut(s)	1013
PceI	AGGCCT	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	1937
PdmI	GAANNNNTTC	2 cut(s)	1016, 1059
PfeI	GAWTC	3 cut(s)	262, 1334, 1841
PflFI	GACNNNGTC	1 cut(s)	1427
PkrI	GCNGC	7 cut(s)	193, 312, 1215, 1855, 1942, 2419, 2584
PleI	GAGTC	3 cut(s)	237, 1327, 2171
PpsI	GAGTC	3 cut(s)	237, 1327, 2171
Ppu21I	YACGTR	1 cut(s)	818
Psp124BI	GAGCTC	2 cut(s)	498, 834
Psp6I	CCWGG	4 cut(s)	123, 1797, 2293, 2547
PspGI	CCWGG	4 cut(s)	123, 1797, 2293, 2547
PspN4I	GGNNCC	7 cut(s)	151, 703, 1110, 1226, 2221, 2292, 2754
PspPI	GGNCC	2 cut(s)	955, 2220
PspXI	VCTCGAGB	1 cut(s)	1984
PstI	CTGCAG	1 cut(s)	2128
PstNI	CAGNNNCTG	1 cut(s)	2548
PsuI	RGATCY	6 cut(s)	424, 919, 1196, 1677, 1725, 2434
PsyI	GACNNNGTC	1 cut(s)	1427
RsaI	GTAC	2 cut(s)	1176, 1469
RsaNI	GTAC	2 cut(s)	1175, 1468
RseI	CAYNNNNRTG	6 cut(s)	528, 981, 1007, 1518, 1812, 2163
SacI	GAGCTC	2 cut(s)	498, 834
SaqAI	TTAA	7 cut(s)	294, 1143, 1688, 1965, 2004, 2105, 2507
SatI	GCNGC	7 cut(s)	192, 311, 1214, 1854, 1941, 2418, 2583
Sau96I	GGNCC	2 cut(s)	955, 2220
ScaI	AGTACT	1 cut(s)	1469
SchI	GAGTC	3 cut(s)	237, 1328, 2171
ScrFI	CCNGG	5 cut(s)	125, 484, 1799, 2295, 2549
SduI	GDGCHC	5 cut(s)	152, 498, 834, 1406, 2702
SexAI	ACCWGGT	2 cut(s)	123, 2547
SfaNI	GCATC	9 cut(s)	297, 678, 745, 938, 1023, 1474, 1719, 2227, 2633
SfcI	CTRYAG	2 cut(s)	201, 2124
Sfr274I	CTCGAG	1 cut(s)	1984
SinI	GGWCC	1 cut(s)	2220
SlaI	CTCGAG	1 cut(s)	1984
SmiMI	CAYNNNNRTG	6 cut(s)	528, 981, 1007, 1518, 1812, 2163
SmlI	CTYRAG	4 cut(s)	1288, 1964, 1984, 2117
SmoI	CTYRAG	4 cut(s)	1288, 1964, 1984, 2117
SpeI	ACTAGT	1 cut(s)	1177
SphI	GCATGC	2 cut(s)	527, 1566
SseBI	AGGCCT	1 cut(s)	1458
SsiI	CCGC	5 cut(s)	99, 167, 313, 1036, 2417
SspMI	CTAG	5 cut(s)	875, 1178, 1256, 2150, 2703
SstI	GAGCTC	2 cut(s)	498, 834
StuI	AGGCCT	1 cut(s)	1458
StyD4I	CCNGG	5 cut(s)	123, 482, 1797, 2293, 2547
StyI	CCWWGG	3 cut(s)	15, 2360, 2577
TaaI	ACNGT	7 cut(s)	230, 334, 881, 941, 1408, 1779, 2484
TaiI	ACGT	3 cut(s)	820, 1653, 1861
TaqI	TCGA	5 cut(s)	70, 260, 868, 1985, 2723
TatI	WGTACW	2 cut(s)	1174, 1467
TauI	GCSGC	1 cut(s)	2420
TfiI	GAWTC	3 cut(s)	262, 1334, 1841
Tru1I	TTAA	7 cut(s)	294, 1143, 1688, 1965, 2004, 2105, 2507
Tru9I	TTAA	7 cut(s)	294, 1143, 1688, 1965, 2004, 2105, 2507
TscAI	CASTG	7 cut(s)	46, 256, 309, 1352, 1411, 1887, 1964
TseFI	GTSAC	3 cut(s)	300, 538, 2068
TseI	GCWGC	6 cut(s)	191, 310, 1213, 1853, 1940, 2582
Tsp45I	GTSAC	3 cut(s)	300, 538, 2068
TspDTI	ATGAA	9 cut(s)	721, 1145, 1238, 1467, 1602, 1688, 1830, 2487, 2623
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	7 cut(s)	46, 256, 309, 1352, 1411, 1887, 1964
Tth111I	GACNNNGTC	1 cut(s)	1427
Vha464I	CTTAAG	1 cut(s)	1964
VpaK11BI	GGWCC	1 cut(s)	2220
XapI	RAATTY	7 cut(s)	434, 1023, 1791, 1818, 2199, 2350, 2732
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	2 cut(s)	527, 1566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	279
XhoI	CTCGAG	1 cut(s)	1984
XmnI	GAANNNNTTC	2 cut(s)	1016, 1059
XspI	CTAG	5 cut(s)	875, 1178, 1256, 2150, 2703
ZrmI	AGTACT	1 cut(s)	1469
Zsp2I	ATGCAT	2 cut(s)	408, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.