pycom05g29830

Transmembrane protein 184C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0004499
Physical Location & Seq
Forward (+)
30184658 .. 30186088
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGGATTTTAGTACAATGGATCGTGGCCAGTTGACCCTGCTAGGATCCGCAGGTTGTGTGATGCTCACAATGCATTTCACAATACAGTTATTGTCGCAACATCTCTTTTACTGGAAGAACCCGAAGGAGCAGAAGGCGATAATAATTATTATTCTTATGGCTCCTATATATGCAGTTGACTCCTTTGTGGGTTTATTGGATATTAAGGGAAGCAAAACATTTTTCATGTTTTTGGACTCTATTAAGGAATGTTACGAGGCTTTGGTAATTGCTAAGTTCTTGGCTCTTATGTATAGTTACCTGAAGATATCCATAAGCAAAAATATCGTGCCAGATGAAATCAAAGGAAGAGAAATTCACCACTCGTTTCCTATGACTCTTTTTCAGCCTCGCACTGTTCGGTTAAACCACCAGACCCTGAAGCTACTCAAATATTGGACGTGGCAGTTTGTCATCATACGCCCAGTTTGTTCTGTTTTGATGATAACTCTACAAGGACTTGGGCTGTACCCCAGTTGGTTGGGCTGGACCTTCACTGTGATTCTTAACCTTTCTGTTTCCTTAGCATTGTACTCTCTAGTGCTGTTTTACCATGTGTTTGCAAAGGAATTGGCACCGCATTCGCCCCTTGCAAAGTTCCTGTGCATCAAGGGAATTGTCTTCTTCGTCTTTTGGCAGGGAGTGGTCATTGACATATTAGCTGCTGTGGGCGTCATTCGATCTCACCATTTCTGGTTAGATGTGGAGCACATCGAGGAAGCTATTCAAAATGTCTTGACATGTTTGGAGATGGTTGTGTTTTCGGTTCTTCAGCAATATGCGTACCACGTTGCTCCTTACAGCGGAGACGTGGAGAAGAAGATGTTAAACAAGAAGAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

295

Amino Acids

33.89

Weight (kDa)

8.84

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 16 - 280 2.9e-76 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 3 cut(s) 48, 617, 843
AclWI GGATC 3 cut(s) 27, 39, 52
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 3 cut(s) 323, 440, 794
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 4 cut(s) 13, 509, 572, 824
AfiI CCNNNNNNNGG 1 cut(s) 842
AflIII ACRYGT 1 cut(s) 779
AgsI TTSAA 1 cut(s) 767
AjiI CACGTC 2 cut(s) 441, 850
AluBI AGCT 3 cut(s) 424, 701, 761
AluI AGCT 3 cut(s) 424, 701, 761
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 3 cut(s) 27, 39, 52
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 350, 716
AvaII GGWCC 1 cut(s) 528
BalI TGGCCA 1 cut(s) 27
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 688
BccI CCATC 1 cut(s) 784
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 603, 637
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 2 cut(s) 41, 578
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
Bme18I GGWCC 1 cut(s) 528
BmgBI CACGTC 2 cut(s) 441, 850
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 3 cut(s) 46, 162, 615
BmrI ACTGGG 2 cut(s) 458, 507
BmsI GCATC 2 cut(s) 51, 654
BmuI ACTGGG 2 cut(s) 458, 507
BpiI GAAGAC 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 4 cut(s) 28, 116, 464, 513
BseLI CCNNNNNNNGG 1 cut(s) 842
BseNI ACTGG 4 cut(s) 28, 116, 464, 513
BseXI GCAGC 1 cut(s) 688
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 750
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 840
BsmBI CGTCTC 1 cut(s) 840
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 19, 44, 719
BspACI CCGC 3 cut(s) 48, 617, 843
BspANI GGCC 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 46, 162, 615
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 3 cut(s) 27, 39, 52
BspT107I GGYRCC 1 cut(s) 613
BsrI ACTGG 4 cut(s) 28, 116, 464, 513
BssMI GATC 3 cut(s) 19, 44, 719
BssNI GRCGYC 1 cut(s) 711
Bst4CI ACNGT 3 cut(s) 87, 397, 538
Bst6I CTCTTC 2 cut(s) 343, 869
BstACI GRCGYC 1 cut(s) 711
BstDEI CTNAG 2 cut(s) 273, 562
BstKTI GATC 3 cut(s) 22, 47, 722
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 3 cut(s) 19, 44, 719
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 783
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 1 cut(s) 652
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 27
BtrI CACGTC 2 cut(s) 441, 850
BtsIMutI CAGTG 2 cut(s) 393, 534
BveI ACCTGC 1 cut(s) 41
CaiI CAGNNNCTG 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 700
Csp6I GTAC 4 cut(s) 12, 508, 571, 823
CviAII CATG 3 cut(s) 226, 593, 780
CviQI GTAC 4 cut(s) 12, 508, 571, 823
DdeI CTNAG 2 cut(s) 273, 562
DpnI GATC 3 cut(s) 21, 46, 721
DpnII GATC 3 cut(s) 19, 44, 719
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 343, 869
EarI CTCTTC 2 cut(s) 343, 869
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 3 cut(s) 323, 440, 794
EcoRV GATATC 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 3 cut(s) 229, 596, 783
FatI CATG 3 cut(s) 225, 592, 779
Fnu4HI GCNGC 1 cut(s) 702
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 2 cut(s) 41, 578
GluI GCNGC 1 cut(s) 702
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 1 cut(s) 700
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 229, 596, 783
HincII GTYRAC 2 cut(s) 33, 178
HindII GTYRAC 2 cut(s) 33, 178
HinfI GANTC 4 cut(s) 179, 236, 376, 541
HphI GGTGA 2 cut(s) 350, 716
Hpy166II GTNNAC 2 cut(s) 33, 178
Hpy188III TCNNGA 1 cut(s) 775
Hpy8I GTNNAC 2 cut(s) 33, 178
HpyAV CCTTC 3 cut(s) 118, 127, 541
HpyCH4III ACNGT 3 cut(s) 87, 397, 538
HpyCH4IV ACGT 3 cut(s) 440, 828, 849
HpyCH4V TGCA 5 cut(s) 73, 173, 602, 632, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 273, 562
HpySE526I ACGT 3 cut(s) 440, 828, 849
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 229, 596, 783
Kzo9I GATC 3 cut(s) 19, 44, 719
LmnI GCTCC 4 cut(s) 127, 166, 745, 838
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 2 cut(s) 51, 654
MaeI CTAG 2 cut(s) 41, 578
MaeII ACGT 3 cut(s) 440, 828, 849
MaeIII GTNAC 2 cut(s) 251, 296
MalI GATC 3 cut(s) 21, 46, 721
MboI GATC 3 cut(s) 19, 44, 719
MboII GAAGA 8 cut(s) 127, 316, 360, 652, 655, 800, 868, 871
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 750
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 5 cut(s) 144, 267, 354, 608, 654
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 3 cut(s) 173, 230, 370
MnlI CCTC 4 cut(s) 250, 399, 748, 870
Mox20I TGGCCA 1 cut(s) 27
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 1 cut(s) 27
MseI TTAA 5 cut(s) 204, 243, 404, 546, 866
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 44, 719
NlaIII CATG 3 cut(s) 229, 596, 783
NlaIV GGNNCC 3 cut(s) 46, 162, 615
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 1 cut(s) 783
PciI ACATGT 1 cut(s) 779
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 173, 230, 370
PpsI GAGTC 3 cut(s) 173, 230, 370
PscI ACATGT 1 cut(s) 779
PspN4I GGNNCC 3 cut(s) 46, 162, 615
PspPI GGNCC 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 4 cut(s) 13, 509, 572, 824
RsaNI GTAC 4 cut(s) 12, 508, 571, 823
SaqAI TTAA 5 cut(s) 204, 243, 404, 546, 866
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 3 cut(s) 19, 44, 719
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 3 cut(s) 173, 230, 370
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 51, 654
SinI GGWCC 1 cut(s) 528
Sse9I AATT 5 cut(s) 144, 267, 354, 608, 654
SsiI CCGC 3 cut(s) 48, 617, 843
SspI AATATT 1 cut(s) 434
SspMI CTAG 2 cut(s) 41, 578
TaaI ACNGT 3 cut(s) 87, 397, 538
TaiI ACGT 3 cut(s) 443, 831, 852
TaqI TCGA 2 cut(s) 718, 753
TasI AATT 5 cut(s) 144, 267, 354, 608, 654
TatI WGTACW 2 cut(s) 11, 570
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 5 cut(s) 204, 243, 404, 546, 866
Tru9I TTAA 5 cut(s) 204, 243, 404, 546, 866
TscAI CASTG 2 cut(s) 400, 541
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 2 cut(s) 214, 351
TspRI CASTG 2 cut(s) 400, 541
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 1 cut(s) 354
XceI RCATGY 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 2 cut(s) 41, 578
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.