Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

31719585 .. 31720375

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACGAAATCTCAAGGAACATTTGCAAGATCCCGTCCTGATATTTTTGGTACCACAGAAGAAGAGGTTTCTAATGTTATCAAGGCTAAGATCGAAAAAACGAAAGATGAGCAAGAAAAGCAGGTTATATGGGATGGTCACACTGGAAGCATTGGCTTTAATCAAAACTATGTTCCTAAAAACGGTGCAAGGAACCTTCCTGGTCAGCAGCTCCTCCTCCAAAGTTGGTTGTTCCCGTATTTTACACCTATGCAAGTTCCTCGTGCCTATATTCCTCTTCATGCTCCGTTACCTACGATGCAATCGATGCCACCACTGCCTTTGCCTCAGGTTATCCCACCCCCTGAGAAAGCCCGTCCACGACGTCCGGAAGAAGAGCCTGAGCCAAAGCGGCAGAAGCTTGACGATTATATAGTAGCTGTCCCCAATGCCAATGAAGGTAATCTGAAGGGGCGATTTTTGGAGATTATAGTGCAGTCATTGTCTGAATCTGTTGTTAAGCTGAAAGAACAAATTTCTGCGGAGATTCAGCTTCCTGCAAATAAACAGAAACTCAGTGGAAAACCCGGCTTTCTCAAAGACAATCTGTCGCTTGCTTACTACAATGTTGGAGCTGGAGAAACAATTACCCTTTCAGTACGAGAGCATGGCAGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

9.52

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	161 - 214	8.2e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	391, 521
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	2 cut(s)	52, 639
AfiI	CCNNNNNNNGG	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	6 cut(s)	211, 400, 419, 502, 532, 614
AluI	AGCT	6 cut(s)	211, 400, 419, 502, 532, 614
AlwI	GGATC	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	567
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	209, 392
BlsI	GCNGC	2 cut(s)	210, 393
Bme1390I	CCNGG	2 cut(s)	201, 567
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmiI	GGNNCC	2 cut(s)	52, 194
BmrFI	CCNGG	2 cut(s)	201, 567
BmsI	GCATC	2 cut(s)	288, 297
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	305
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	336, 341, 372, 568
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	203, 206
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	368, 567
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	407
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	29, 90
BspACI	CCGC	2 cut(s)	391, 521
BspCNI	CTCAG	4 cut(s)	337, 340, 373, 567
BspDI	ATCGAT	1 cut(s)	305
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	52, 194
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	29, 90
BssNI	GRCGYC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	3 cut(s)	57, 282, 369
BstACI	GRCGYC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	5 cut(s)	87, 327, 345, 381, 554
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	32, 93
BstMBI	GATC	2 cut(s)	29, 90
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	199, 565
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	3 cut(s)	141, 314, 562
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	594
ClaI	ATCGAT	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	51, 638
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	2 cut(s)	281, 647
CviQI	GTAC	2 cut(s)	51, 638
DdeI	CTNAG	5 cut(s)	87, 327, 345, 381, 554
DpnI	GATC	2 cut(s)	31, 92
DpnII	GATC	2 cut(s)	29, 90
DriI	GACNNNNNGTC	1 cut(s)	586
Eam1104I	CTCTTC	3 cut(s)	57, 282, 369
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	3 cut(s)	57, 282, 369
Eco57I	CTGAAG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	284, 650
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	2 cut(s)	280, 646
Fnu4HI	GCNGC	2 cut(s)	209, 392
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	209, 392
GluI	GCNGC	2 cut(s)	209, 392
GsuI	CTGGAG	1 cut(s)	636
HapII	CCGG	2 cut(s)	368, 567
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	284, 650
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	488, 526
HpaII	CCGG	2 cut(s)	368, 567
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	447, 487
Hpy188III	TCNNGA	2 cut(s)	38, 368
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	206, 431, 442
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	6 cut(s)	26, 188, 253, 301, 475, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
HpyF3I	CTNAG	5 cut(s)	87, 327, 345, 381, 554
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	284, 650
Kpn2I	TCCGGA	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	29, 90
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	216, 289, 611
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	288, 297
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	137, 288
MalI	GATC	2 cut(s)	31, 92
MboI	GATC	2 cut(s)	29, 90
MboII	GAAGA	6 cut(s)	71, 74, 269, 383, 386, 666
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	2 cut(s)	513, 624
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	6 cut(s)	58, 224, 227, 270, 285, 336
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	2 cut(s)	159, 498
MspI	CCGG	2 cut(s)	368, 567
MspR9I	CCNGG	2 cut(s)	201, 567
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	5 cut(s)	118, 307, 316, 391, 397
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	29, 90
NlaIII	CATG	2 cut(s)	284, 650
NlaIV	GGNNCC	2 cut(s)	52, 194
NmuCI	GTSAC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	488, 526
PkrI	GCNGC	2 cut(s)	210, 393
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	52, 194
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	52, 639
RsaNI	GTAC	2 cut(s)	51, 638
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	159, 498
SatI	GCNGC	2 cut(s)	209, 392
Sau3AI	GATC	2 cut(s)	29, 90
ScrFI	CCNGG	2 cut(s)	201, 567
SfaNI	GCATC	2 cut(s)	288, 297
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	513, 624
SsiI	CCGC	2 cut(s)	391, 521
StyD4I	CCNGG	2 cut(s)	199, 565
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	93, 305
TasI	AATT	2 cut(s)	513, 624
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	488, 526
Tru1I	TTAA	2 cut(s)	159, 498
Tru9I	TTAA	2 cut(s)	159, 498
TscAI	CASTG	3 cut(s)	148, 321, 562
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	269, 450
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	3 cut(s)	148, 321, 562
XapI	RAATTY	1 cut(s)	513
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.