pycom06g03920

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003640
Physical Location & Seq
Forward (+)
4904671 .. 4908570
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
ATGGGTCGGAAGCAAAACGACCCAGAAGCCACCCATTACTTCTCTTTCGTCCTCCTCTTGGTGGTTTTGGTTTCCTGTGCTCTGGTCTACACATTCGTCTCTGCGGTGCTTAAACCCAATGACGCCTCTTCATTCTCGGAGCTCGAGTCGTTGACGTTGGTTGAGGAGGGCGGCGGCGTTGGGGTGGAGGGGGAGAGTGGTGGCGGGTGTTGCAGAGGGACTGAGAATTTGGAGCTGTGGGGGGCTGCCGTGAAGTGGGGTTCTGAGTTTAAGTTCAGTTCTTCTGAGGAATGCTGCAAGGCGTGTAAATCCATGTGTACTGGGACTGATGGGCCTTGCTTGTGTGATTCTTGGGTGTTTTGTGGGAACAAGGAGGCTTGCGGCTCCAAATTTGGTGAGTGCTGGTTGAAGAAACAGAAAGATACATTGGCACCACAGCGCCAGGAAGTAGGGGAAACAGTTATGTGGACTTCTGGACTCATCTTTGGGAAAGGAGAGGGCATTGTTGGCTTGGAAACAGAATATGGAACTCTTCATATAAAACTTTTCCCTGAATGTGCCCCTCATTCTGTAGCCTACATTCTTGAGTTGTTGGCATTGCGCCATTGTGCAGGCTGCCAGTTTTATCGTGCAGAGAGCCGAGGGCAATCATGGGATTCAGAAGGAAACCACATAAAAAATACTCCTTTTGGCCCTCCATTTGCACTGGTTCAAGGAACACTAGAAGCCCAAGGAGGCACATTTACGAAGATTCCGACTGAAGTTTGCCCGACCATTAGAAGGGGTTCGGTAGCGTGGATTGGTTCTGGCCCAGAATTTTTCATAAGCCTAGCAAATCACGTAGAGTGGAAAAAAGACTACACTGTCTTTGCTTCTGTTCTTCCAGAAGACATGAACATCGCCGAGAAAATTGCTCAACTTCCGACCACTCCAGAGGTTTGGAACAGTATCAATGTGACCGTCTTGGAAAAGCCGGTTCCCTTGCTTCTGCGAAGAATCAAGACGAGTCATGGAGATCTCACTGCAAACATGAAATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4 Pro_isomerase

Protein Analysis

348

Amino Acids

37.81

Weight (kDa)

5.4

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 169 - 322 1.4e-10 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 87
AciI CCGC 5 cut(s) 104, 171, 174, 204, 381
AcsI RAATTY 3 cut(s) 226, 389, 815
AcuI CTGAAG 1 cut(s) 780
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 58, 61, 255, 780
AgsI TTSAA 2 cut(s) 409, 713
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 2 cut(s) 142, 235
AluI AGCT 2 cut(s) 142, 235
Alw21I GWGCWC 2 cut(s) 82, 144
Alw26I GTCTC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 3 cut(s) 332, 691, 808
ApeKI GCWGC 3 cut(s) 245, 294, 615
ApoI RAATTY 3 cut(s) 226, 389, 815
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 2 cut(s) 441, 603
AspS9I GGNCC 3 cut(s) 332, 692, 809
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 82, 144
BbvI GCAGC 3 cut(s) 232, 281, 602
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 893, 927
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 722, 830
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 442
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 6 cut(s) 172, 175, 246, 295, 382, 616
BlsI GCNGC 6 cut(s) 173, 176, 247, 296, 383, 617
Bme1390I CCNGG 1 cut(s) 443
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 3 cut(s) 332, 692, 809
BmiI GGNNCC 3 cut(s) 385, 432, 978
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 894
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 1 cut(s) 605
BsaAI YACGTR 1 cut(s) 841
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 640, 730
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 61, 255, 780
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 3 cut(s) 325, 619, 711
Bse3DI GCAATG 1 cut(s) 596
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 640, 730
BseLI CCNNNNNNNGG 4 cut(s) 58, 61, 255, 780
BseMI GCAATG 1 cut(s) 596
BseMII CTCAG 3 cut(s) 213, 255, 276
BseNI ACTGG 3 cut(s) 325, 619, 711
BseRI GAGGAG 2 cut(s) 44, 179
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 3 cut(s) 232, 281, 602
BsgI GTGCAG 2 cut(s) 630, 651
BshFI GGCC 3 cut(s) 334, 693, 810
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 82, 144
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 974
BslFI GGGAC 2 cut(s) 232, 337
BslI CCNNNNNNNGG 4 cut(s) 58, 61, 255, 780
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 232, 337
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 3 cut(s) 334, 693, 810
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 82, 144, 562
Bsp143I GATC 1 cut(s) 1015
BspACI CCGC 5 cut(s) 104, 171, 174, 204, 381
BspANI GGCC 3 cut(s) 334, 693, 810
BspCNI CTCAG 3 cut(s) 214, 256, 277
BspLI GGNNCC 3 cut(s) 385, 432, 978
BspT107I GGYRCC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 973
BsrI ACTGG 3 cut(s) 325, 619, 711
BssAI RCCGGY 1 cut(s) 973
BssECI CCNNGG 2 cut(s) 640, 730
BssMI GATC 1 cut(s) 1015
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 460, 865, 947, 961
Bst6I CTCTTC 2 cut(s) 133, 537
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 841
BstC8I GCNNGC 2 cut(s) 379, 613
BstDEI CTNAG 3 cut(s) 222, 264, 285
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 2 cut(s) 441, 603
BstKTI GATC 1 cut(s) 1018
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 1015
BstMWI GCNNNNNNNGC 2 cut(s) 210, 507
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 3 cut(s) 232, 281, 602
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 1015
BstXI CCANNNNNNTGG 1 cut(s) 939
BstYI RGATCY 1 cut(s) 1015
BsuRI GGCC 3 cut(s) 334, 693, 810
BtgZI GCGATG 1 cut(s) 883
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 3 cut(s) 704, 861, 1020
Cac8I GCNNGC 2 cut(s) 379, 613
CfoI GCGC 2 cut(s) 441, 603
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 3 cut(s) 332, 692, 809
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 318
CviAII CATG 5 cut(s) 313, 651, 892, 1010, 1030
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 3 cut(s) 222, 264, 285
DpnI GATC 1 cut(s) 1017
DpnII GATC 1 cut(s) 1015
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
Eam1104I CTCTTC 2 cut(s) 133, 537
EarI CTCTTC 2 cut(s) 133, 537
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 730
Eco24I GRGCYC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 730
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 730
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 5 cut(s) 316, 654, 895, 1013, 1033
FaqI GGGAC 2 cut(s) 232, 337
FatI CATG 5 cut(s) 312, 650, 891, 1009, 1029
FauI CCCGC 1 cut(s) 197
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 6 cut(s) 172, 175, 246, 295, 382, 616
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 172, 175, 246, 295, 382, 616
FspBI CTAG 2 cut(s) 722, 830
GlaI GCGC 2 cut(s) 440, 602
GluI GCNGC 6 cut(s) 172, 175, 246, 295, 382, 616
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 3 cut(s) 334, 693, 810
HapII CCGG 1 cut(s) 974
HgaI GACGC 1 cut(s) 131
HhaI GCGC 2 cut(s) 441, 603
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 316, 654, 895, 1013, 1033
Hin6I GCGC 2 cut(s) 439, 601
HinP1I GCGC 2 cut(s) 439, 601
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 7 cut(s) 146, 347, 477, 656, 751, 996, 1006
HpaII CCGG 1 cut(s) 974
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 4 cut(s) 88, 153, 318, 468
Hpy188I TCNGA 7 cut(s) 9, 139, 265, 286, 661, 756, 924
Hpy188III TCNNGA 5 cut(s) 474, 584, 884, 932, 1000
Hpy8I GTNNAC 4 cut(s) 88, 153, 318, 468
HpyAV CCTTC 2 cut(s) 656, 774
HpyCH4III ACNGT 4 cut(s) 460, 865, 947, 961
HpyCH4IV ACGT 2 cut(s) 155, 840
HpyCH4V TGCA 6 cut(s) 213, 297, 611, 632, 704, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 507
HpyF3I CTNAG 3 cut(s) 222, 264, 285
HpySE526I ACGT 2 cut(s) 155, 840
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 316, 654, 895, 1013, 1033
HspAI GCGC 2 cut(s) 439, 601
Kzo9I GATC 1 cut(s) 1015
LmnI GCTCC 3 cut(s) 139, 232, 389
Lsp1109I GCAGC 3 cut(s) 232, 281, 602
MaeI CTAG 2 cut(s) 722, 830
MaeII ACGT 2 cut(s) 155, 840
MaeIII GTNAC 1 cut(s) 955
MalI GATC 1 cut(s) 1017
MboI GATC 1 cut(s) 1015
MboII GAAGA 8 cut(s) 120, 273, 421, 524, 760, 872, 899, 1005
MflI RGATCY 1 cut(s) 1015
MhlI GDGCHC 3 cut(s) 82, 144, 562
MluCI AATT 5 cut(s) 226, 389, 815, 909, 1039
MlyI GAGTC 3 cut(s) 155, 471, 1015
MmeI TCCRAC 2 cut(s) 779, 947
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 3 cut(s) 111, 270, 1042
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 210, 507
NdeII GATC 1 cut(s) 1015
NlaIII CATG 5 cut(s) 316, 654, 895, 1013, 1033
NlaIV GGNNCC 3 cut(s) 385, 432, 978
NmeAIII GCCGAG 2 cut(s) 665, 928
NmuCI GTSAC 1 cut(s) 955
PaeR7I CTCGAG 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 4 cut(s) 347, 656, 751, 996
PkrI GCNGC 6 cut(s) 173, 176, 247, 296, 383, 617
PleI GAGTC 3 cut(s) 154, 471, 1014
PpsI GAGTC 3 cut(s) 154, 471, 1014
Ppu21I YACGTR 1 cut(s) 841
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 385, 432, 978
PspPI GGNCC 3 cut(s) 332, 692, 809
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 1 cut(s) 1015
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 111, 270, 1042
SatI GCNGC 6 cut(s) 172, 175, 246, 295, 382, 616
Sau3AI GATC 1 cut(s) 1015
Sau96I GGNCC 3 cut(s) 332, 692, 809
SchI GAGTC 3 cut(s) 155, 471, 1015
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 3 cut(s) 82, 144, 562
SetI ASST 5 cut(s) 144, 158, 237, 843, 939
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 143, 584
SmoI CTYRAG 2 cut(s) 143, 584
Sse9I AATT 5 cut(s) 226, 389, 815, 909, 1039
SsiI CCGC 5 cut(s) 104, 171, 174, 204, 381
SspMI CTAG 2 cut(s) 722, 830
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 4 cut(s) 460, 865, 947, 961
TaiI ACGT 2 cut(s) 158, 843
TaqI TCGA 1 cut(s) 144
TasI AATT 5 cut(s) 226, 389, 815, 909, 1039
TatI WGTACW 1 cut(s) 317
TauI GCSGC 3 cut(s) 174, 177, 384
TfiI GAWTC 4 cut(s) 347, 656, 751, 996
Tru1I TTAA 3 cut(s) 111, 270, 1042
Tru9I TTAA 3 cut(s) 111, 270, 1042
TscAI CASTG 3 cut(s) 711, 868, 1027
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 3 cut(s) 245, 294, 615
Tsp45I GTSAC 1 cut(s) 955
TspDTI ATGAA 4 cut(s) 120, 524, 811, 908
TspRI CASTG 3 cut(s) 711, 868, 1027
XapI RAATTY 3 cut(s) 226, 389, 815
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 2 cut(s) 722, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.