Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g25080 |
| malus_domestica | MD02G1222500.v1.1 MD07G1092900.v1.1 MD07G1093100.v1.1 |
| prunus_persica | Prupe.1G180300_v2.0.a1 |
| pyrus_communis | pycom07g07630 |
| rosa_chinensis | RchiOBHm_Chr4g0407101 RchiOBHm_Chr4g0407111 RchiOBHm_Chr7g0215291 |
| rosa_laevigata | RLG00000002673 RLG00000008854 |
| rosa_multiflora | Rmu_co8487181.1_g000001 Rmu_sc0002701.1_g000058 Rmu_ssc0000126.1_g000065 |
| rosa_roxburghii | Rroxscaffold_3G00244320 Rroxscaffold_6G00393890 |
| rosa_rugosa | Rorug07G0151900 Rorug07G0152000 |
| rosa_samantha | Rh4AG142800 Rh4BG121000 Rh4CG149300 Rh4CG149400 Rh4DG124200 Rh7AG288500 Rh7AG288700 Rh7BG280700 Rh7CG308400 Rh7CG308500 Rh7DG292200 |
| rosa_wichuraiana | Rw7G024670 Rw7G024680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 101 |
| AccIII | TCCGGA | 1 cut(s) | 475 |
| AciI | CCGC | 1 cut(s) | 218 |
| AclWI | GGATC | 3 cut(s) | 467, 658, 671 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AcuI | CTGAAG | 1 cut(s) | 37 |
| AfaI | GTAC | 2 cut(s) | 601, 691 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 673, 674 |
| AgsI | TTSAA | 3 cut(s) | 43, 202, 262 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 15, 47 |
| AluBI | AGCT | 4 cut(s) | 270, 441, 644, 652 |
| AluI | AGCT | 4 cut(s) | 270, 441, 644, 652 |
| AlwI | GGATC | 3 cut(s) | 467, 658, 671 |
| Aor13HI | TCCGGA | 1 cut(s) | 475 |
| AoxI | GGCC | 2 cut(s) | 362, 570 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| AspS9I | GGNCC | 2 cut(s) | 362, 570 |
| AsuHPI | GGTGA | 2 cut(s) | 326, 359 |
| BamHI | GGATCC | 1 cut(s) | 663 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 1 cut(s) | 653 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 197, 231 |
| BclI | TGATCA | 1 cut(s) | 501 |
| BfaI | CTAG | 1 cut(s) | 645 |
| BfuAI | ACCTGC | 1 cut(s) | 101 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| BmcAI | AGTACT | 1 cut(s) | 691 |
| BmgT120I | GGNCC | 2 cut(s) | 362, 570 |
| BmiI | GGNNCC | 2 cut(s) | 363, 665 |
| BmsI | GCATC | 1 cut(s) | 526 |
| BsaAI | YACGTR | 1 cut(s) | 489 |
| BsaWI | WCCGGW | 1 cut(s) | 475 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 673, 674 |
| BseAI | TCCGGA | 1 cut(s) | 475 |
| BseGI | GGATG | 3 cut(s) | 64, 249, 484 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 673, 674 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| BsgI | GTGCAG | 1 cut(s) | 81 |
| BshFI | GGCC | 2 cut(s) | 364, 572 |
| BsiSI | CCGG | 1 cut(s) | 476 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 673, 674 |
| BsmI | GAATGC | 1 cut(s) | 208 |
| BsnI | GGCC | 2 cut(s) | 364, 572 |
| Bsp13I | TCCGGA | 1 cut(s) | 475 |
| Bsp143I | GATC | 3 cut(s) | 472, 501, 663 |
| BspACI | CCGC | 1 cut(s) | 218 |
| BspANI | GGCC | 2 cut(s) | 364, 572 |
| BspEI | TCCGGA | 1 cut(s) | 475 |
| BspLI | GGNNCC | 2 cut(s) | 363, 665 |
| BspMI | ACCTGC | 1 cut(s) | 101 |
| BspPI | GGATC | 3 cut(s) | 467, 658, 671 |
| BssMI | GATC | 3 cut(s) | 472, 501, 663 |
| Bst4CI | ACNGT | 4 cut(s) | 430, 515, 589, 604 |
| Bst6I | CTCTTC | 1 cut(s) | 74 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 536 |
| BstBAI | YACGTR | 1 cut(s) | 489 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstF5I | GGATG | 3 cut(s) | 64, 249, 484 |
| BstKTI | GATC | 3 cut(s) | 475, 504, 666 |
| BstMBI | GATC | 3 cut(s) | 472, 501, 663 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 536 |
| BstNSI | RCATGY | 1 cut(s) | 452 |
| BstSNI | TACGTA | 1 cut(s) | 489 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstX2I | RGATCY | 1 cut(s) | 663 |
| BstYI | RGATCY | 1 cut(s) | 663 |
| BsuRI | GGCC | 2 cut(s) | 364, 572 |
| BtsCI | GGATG | 3 cut(s) | 64, 249, 484 |
| BtsIMutI | CAGTG | 1 cut(s) | 473 |
| BveI | ACCTGC | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| Cfr13I | GGNCC | 2 cut(s) | 362, 570 |
| Csp6I | GTAC | 2 cut(s) | 600, 690 |
| CviAII | CATG | 3 cut(s) | 372, 449, 711 |
| CviJI | RGCY | 9 cut(s) | 50, 265, 270, 364, 441, 572, 580, 644, 652 |
| CviKI_1 | RGCY | 9 cut(s) | 50, 265, 270, 364, 441, 572, 580, 644, 652 |
| CviQI | GTAC | 2 cut(s) | 600, 690 |
| DpnI | GATC | 3 cut(s) | 474, 503, 665 |
| DpnII | GATC | 3 cut(s) | 472, 501, 663 |
| Eam1104I | CTCTTC | 1 cut(s) | 74 |
| EarI | CTCTTC | 1 cut(s) | 74 |
| Eco105I | TACGTA | 1 cut(s) | 489 |
| Eco57I | CTGAAG | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 2 cut(s) | 362, 570 |
| FaeI | CATG | 3 cut(s) | 375, 452, 714 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 254, 286 |
| FatI | CATG | 3 cut(s) | 371, 448, 710 |
| FbaI | TGATCA | 1 cut(s) | 501 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| FokI | GGATG | 3 cut(s) | 71, 256, 491 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| FspBI | CTAG | 1 cut(s) | 645 |
| GluI | GCNGC | 1 cut(s) | 96 |
| HaeIII | GGCC | 2 cut(s) | 364, 572 |
| HapII | CCGG | 1 cut(s) | 476 |
| Hin1II | CATG | 3 cut(s) | 375, 452, 714 |
| HindIII | AAGCTT | 1 cut(s) | 650 |
| HinfI | GANTC | 3 cut(s) | 158, 286, 397 |
| HpaII | CCGG | 1 cut(s) | 476 |
| HphI | GGTGA | 2 cut(s) | 326, 359 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 501 |
| Hpy188III | TCNNGA | 3 cut(s) | 176, 199, 476 |
| HpyAV | CCTTC | 3 cut(s) | 61, 328, 352 |
| HpyCH4III | ACNGT | 4 cut(s) | 430, 515, 589, 604 |
| HpyCH4IV | ACGT | 1 cut(s) | 488 |
| HpyCH4V | TGCA | 7 cut(s) | 29, 98, 448, 509, 539, 553, 566 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 536 |
| HpySE526I | ACGT | 1 cut(s) | 488 |
| Hsp92II | CATG | 3 cut(s) | 375, 452, 714 |
| Kpn2I | TCCGGA | 1 cut(s) | 475 |
| Ksp22I | TGATCA | 1 cut(s) | 501 |
| Kzo9I | GATC | 3 cut(s) | 472, 501, 663 |
| LpnPI | CCDG | 6 cut(s) | 40, 96, 489, 512, 586, 681 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 1 cut(s) | 526 |
| MaeI | CTAG | 1 cut(s) | 645 |
| MaeII | ACGT | 1 cut(s) | 488 |
| MaeIII | GTNAC | 1 cut(s) | 589 |
| MalI | GATC | 3 cut(s) | 474, 503, 665 |
| MboI | GATC | 3 cut(s) | 472, 501, 663 |
| MboII | GAAGA | 1 cut(s) | 91 |
| MfeI | CAATTG | 1 cut(s) | 279 |
| MflI | RGATCY | 1 cut(s) | 663 |
| MluCI | AATT | 7 cut(s) | 44, 72, 279, 309, 376, 461, 679 |
| MroI | TCCGGA | 1 cut(s) | 475 |
| MseI | TTAA | 1 cut(s) | 387 |
| MspI | CCGG | 1 cut(s) | 476 |
| MunI | CAATTG | 1 cut(s) | 279 |
| Mva1269I | GAATGC | 1 cut(s) | 208 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 536 |
| NdeII | GATC | 3 cut(s) | 472, 501, 663 |
| NlaIII | CATG | 3 cut(s) | 375, 452, 714 |
| NlaIV | GGNNCC | 2 cut(s) | 363, 665 |
| NmeAIII | GCCGAG | 1 cut(s) | 291 |
| NspI | RCATGY | 1 cut(s) | 452 |
| PctI | GAATGC | 1 cut(s) | 208 |
| PfeI | GAWTC | 3 cut(s) | 158, 286, 397 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| Ppu21I | YACGTR | 1 cut(s) | 489 |
| PspN4I | GGNNCC | 2 cut(s) | 363, 665 |
| PspPI | GGNCC | 2 cut(s) | 362, 570 |
| PsuI | RGATCY | 1 cut(s) | 663 |
| RsaI | GTAC | 2 cut(s) | 601, 691 |
| RsaNI | GTAC | 2 cut(s) | 600, 690 |
| SaqAI | TTAA | 1 cut(s) | 387 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 3 cut(s) | 472, 501, 663 |
| Sau96I | GGNCC | 2 cut(s) | 362, 570 |
| ScaI | AGTACT | 1 cut(s) | 691 |
| SfaNI | GCATC | 1 cut(s) | 526 |
| SnaBI | TACGTA | 1 cut(s) | 489 |
| Sse9I | AATT | 7 cut(s) | 44, 72, 279, 309, 376, 461, 679 |
| SsiI | CCGC | 1 cut(s) | 218 |
| SspMI | CTAG | 1 cut(s) | 645 |
| TaaI | ACNGT | 4 cut(s) | 430, 515, 589, 604 |
| TaiI | ACGT | 1 cut(s) | 491 |
| TasI | AATT | 7 cut(s) | 44, 72, 279, 309, 376, 461, 679 |
| TatI | WGTACW | 1 cut(s) | 689 |
| TfiI | GAWTC | 3 cut(s) | 158, 286, 397 |
| Tru1I | TTAA | 1 cut(s) | 387 |
| Tru9I | TTAA | 1 cut(s) | 387 |
| TscAI | CASTG | 1 cut(s) | 473 |
| TseI | GCWGC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 3 cut(s) | 17, 159, 533 |
| TspRI | CASTG | 1 cut(s) | 473 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XceI | RCATGY | 1 cut(s) | 452 |
| XspI | CTAG | 1 cut(s) | 645 |
| ZrmI | AGTACT | 1 cut(s) | 691 |