Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002701.1

Orthogroup ID

OG0004858

Physical Location & Seq

Genomic Coordinates Forward (+)

198617 .. 203175

Gene Structure 4559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002701.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

atgtgcttcaaccgcaacaacctagatgtatatacagccctagatgtatattctgtaaagtttacagaattcaaaagctgcttctccggcggcgttgagcttcaaatgtccggtgaggcgcgtcgccttcacccttctctcaaggtacactattatcacactctcaactcctcccgacccacctctgcttttcacagcagctttgattttctcactcagttcttgccattctcttccaacaagcccaattccaaatcctctatgaactccaatgagcggcgtaaagtcactgttgggttatccaggatcataaagaaccaacagggctatgtactcaagggcttttccagaaccttctgcccattttttcttgtaaagattatgaaactgttctgttgtagagaaactgcatttgggttctttaaactagcctttagggatgataatcagcagactgtggagtcatgttgtgtggctgcacatgttttggcggccgaaaatctacggtttctggctcaagatgtggtttcgtgtgtgattgggaggattggcccgagtaggagtagggatttggtggggtttatgtggggagggcattgtgaatacgagtcggatttttcggttcttgatacactaatgagggggttcttgaatgcggaaatgggcgccgaggctttggaggttttgaggaggatgagggaggtgggagtgaggccgagtttgtcagcggttgcgattctgttcaggttgttgataagggttggtgattatggtagtgtgtggaaggtgtttagggatatgattagagaagggccttatccatgtaattatgtttttagtgcaatgattcttgggttttgtcaaaaagggttggttagagttggggagagtttgttacaggtgatgtggaaattccaatgtgaaccggatgtttttgcttataacattgtgatctatgcaaattgtgcgagagggcagacagctgatgcgcttgaatgggtggagttgatgattgcgaggggatgtaaaccgagcattgttacatttaatacagtcataagtgcattgtgtaaggagggaaatgtggtggaggcaaggaagctttttgatgatgtcccagacatgggtgtttatccgaataccataatttacaataccatgatggatgggtatgttaaggcaagggagattggtcaggctaacacgctttttgaagaaatgagaaacaagagcatttctccagatggcataactttcaatatcttgattggagggcattacaagtatggaagtgaagatgatggagacaggttgttgcgggatttatctgtgtcaggattacttccagattcttcattgtatgatatctatgtttctgtgttgtgttgggcagatcggttggacgatgccatggcagttttagaggatatgcttgaaagaggattgcctctaagtgtggtcgctttcaactctgtcattgcagcttgtagcagagtagggttggaagaaaaaacatataaggcctttaacttcatgatttcatttggtataactccttcatcttctacgtgtagttctttgcttatgggtttatctaagaagggttacttgcaagaagccagagagcttttgtgtaaaatgatggagaaggggtttcctatcagaaaagctgcttttacggtgcttttggatgggtactttaggatgggtgatttagatggggcacaaagtttgtggaatgagatggaaggaagaggcatatctcctgatgttgttgccttttcagcatttatcaatggactatcgaaagccggtttaatggaagaagcatatgatatgtttcaagaaatgtcaagaagaggttttgtgcccaataattttgtctataattctttgattggtgggttttgctactgtggtaagttgagtgatgcactggggttggagagagagatgaggcaaaggggtcttgttccggatatttttaccaccaatatgatcattcatgggttctgtagacaggggaggatgaagtcagcaattaatacatttatgaacatgttccaaactgggttaaccccagatatcgtcacttacaatacattaattggtggttattgtaaagtatttgacatggttagggcagatgaatttttgtataaaatgtacgctagcggatgggaaccagatatcacaacctataatatacggatgcatggtttttgtagtagccgaaagataaatcgagctgtgatgattctggatgagcttgtatcgagaggtgttgttccggacacagtaacatacaacactatgatgaatggtgtttgtgttgacatactggatcgtgctatgattttaaccgctaaattgcttaagttggcgtttcttccaaatgttgttacagctaatgtattgttgtctcagttccgcaggcaggggatgcctgagaaggccctaatgtggggtcagaagttgagtcagttttccttttgttttgatgaaattacctacaaaatattggacagagcctatcaaaatatgcaagaagatcctgcaattccaagtgcaacacctgagaaaagcctcttcttggatttcctcatgtacattacgtatgattatttatgtaaaaataaaccttgcagaggttccgataaaggaggtggaaaggagattgggctagtagcaaagaagtcaagctcggccagtgttgaagtgttggctgaaattccagaaggtcagcactcttccattgatgtttggcatgtgataagtgcatctgtgaaagcagcatgctcccctgcaaaagattctggggaagaagtgaaagatctgcgatttgcatctacttgttcccttgttgcaatggatgccgatggctctcctgtttcgtttttttggagtggtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

971

Amino Acids

108.8

Weight (kDa)

6.64

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004858)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25080
malus_domestica	MD02G1222500.v1.1 MD07G1092900.v1.1 MD07G1093100.v1.1
prunus_persica	Prupe.1G180300_v2.0.a1
pyrus_communis	pycom07g07630
rosa_chinensis	RchiOBHm_Chr4g0407101 RchiOBHm_Chr4g0407111 RchiOBHm_Chr7g0215291
rosa_laevigata	RLG00000002673 RLG00000008854
rosa_multiflora	Rmu_co8487181.1_g000001 Rmu_sc0002701.1_g000058 Rmu_ssc0000126.1_g000065
rosa_roxburghii	Rroxscaffold_3G00244320 Rroxscaffold_6G00393890
rosa_rugosa	Rorug07G0151900 Rorug07G0152000
rosa_samantha	Rh4AG142800 Rh4BG121000 Rh4CG149300 Rh4CG149400 Rh4DG124200 Rh7AG288500 Rh7AG288700 Rh7BG280700 Rh7CG308400 Rh7CG308500 Rh7DG292200
rosa_wichuraiana	Rw7G024670 Rw7G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
AasI	GACNNNNNNGTC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	2017
AccII	CGCG	1 cut(s)	121
AccIII	TCCGGA	2 cut(s)	1975, 2290
AclWI	GGATC	3 cut(s)	314, 2352, 2546
AcoI	YGGCCR	2 cut(s)	492, 2706
AcsI	RAATTY	4 cut(s)	68, 911, 2150, 2730
AcyI	GRCGYC	1 cut(s)	666
AfaI	GTAC	5 cut(s)	147, 333, 1697, 2168, 2609
AfiI	CCNNNNNNNGG	8 cut(s)	276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
AflII	CTTAAG	1 cut(s)	2375
AflIII	ACRYGT	3 cut(s)	481, 1568, 2058
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
Alw26I	GTCTC	2 cut(s)	1299, 2427
AlwI	GGATC	3 cut(s)	314, 2352, 2546
Ama87I	CYCGRG	1 cut(s)	553
Aor13HI	TCCGGA	2 cut(s)	1975, 2290
AoxI	GGCC	7 cut(s)	492, 550, 713, 812, 1521, 2454, 2706
ApeKI	GCWGC	6 cut(s)	78, 198, 476, 1481, 1670, 2792
ApoI	RAATTY	4 cut(s)	68, 911, 2150, 2730
AseI	ATTAAT	2 cut(s)	2043, 2105
Asp700I	GAANNNNTTC	2 cut(s)	389, 2060
AspLEI	GCGC	3 cut(s)	121, 668, 991
AspS9I	GGNCC	3 cut(s)	551, 812, 2455
AsuHPI	GGTGA	5 cut(s)	122, 125, 776, 913, 1721
AsuNHI	GCTAGC	1 cut(s)	2171
AvaI	CYCGRG	1 cut(s)	553
BaeGI	GKGCMC	2 cut(s)	1726, 1872
BanI	GGYRCC	1 cut(s)	665
BarI	GAAGNNNNNNTAC	2 cut(s)	1540, 1572
BbvI	GCAGC	6 cut(s)	65, 210, 463, 1493, 1657, 2804
BciT130I	CCWGG	1 cut(s)	304
BclI	TGATCA	1 cut(s)	1998
BcoDI	GTCTC	2 cut(s)	1299, 2427
BfaI	CTAG	5 cut(s)	23, 41, 428, 2172, 2684
BfmI	CTRYAG	1 cut(s)	2014
BfoI	RGCGCY	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	2375
BglII	AGATCT	1 cut(s)	2833
BisI	GCNGC	9 cut(s)	79, 91, 199, 278, 477, 492, 1482, 1671, 2793
BlsI	GCNGC	9 cut(s)	80, 92, 200, 279, 478, 493, 1483, 1672, 2794
Bme1390I	CCNGG	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	3 cut(s)	551, 812, 2455
BmiI	GGNNCC	3 cut(s)	667, 2184, 2653
BmrFI	CCNGG	1 cut(s)	304
BmrI	ACTGGG	2 cut(s)	1946, 2079
BmsI	GCATC	8 cut(s)	976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
BmtI	GCTAGC	1 cut(s)	2175
BmuI	ACTGGG	2 cut(s)	1946, 2079
BplI	GAGNNNNNCTC	2 cut(s)	1222, 1254
BpmI	CTGGAG	1 cut(s)	1224
BpuEI	CTTGAG	3 cut(s)	125, 320, 501
BsaAI	YACGTR	2 cut(s)	1569, 2616
BsaBI	GATNNNNATC	2 cut(s)	444, 2845
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	669, 1410
BsaWI	WCCGGW	4 cut(s)	110, 925, 1975, 2290
BsaXI	ACNNNNNCTCC	4 cut(s)	878, 908, 1637, 1667
Bsc4I	CCNNNNNNNGG	8 cut(s)	276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
Bse118I	RCCGGY	1 cut(s)	1811
Bse1I	ACTGG	4 cut(s)	1941, 2074, 2346, 2709
Bse3DI	GCAATG	3 cut(s)	849, 1476, 2874
Bse8I	GATNNNNATC	2 cut(s)	444, 2845
BseAI	TCCGGA	2 cut(s)	1975, 2290
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	669, 1410
BseJI	GATNNNNATC	2 cut(s)	444, 2845
BseLI	CCNNNNNNNGG	8 cut(s)	276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
BseMI	GCAATG	3 cut(s)	849, 1476, 2874
BseMII	CTCAG	4 cut(s)	230, 2438, 2439, 2568
BseNI	ACTGG	4 cut(s)	1941, 2074, 2346, 2709
BseRI	GAGGAG	2 cut(s)	160, 703
BseSI	GKGCMC	2 cut(s)	1726, 1872
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	6 cut(s)	65, 210, 463, 1493, 1657, 2804
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	7 cut(s)	494, 552, 715, 814, 1523, 2456, 2708
BshNI	GGYRCC	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	6 cut(s)	87, 111, 926, 1812, 1976, 2291
BslFI	GGGAC	1 cut(s)	1100
BslI	CCNNNNNNNGG	8 cut(s)	276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
BsmAI	GTCTC	2 cut(s)	1299, 2427
BsmFI	GGGAC	1 cut(s)	1100
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	7 cut(s)	494, 552, 715, 814, 1523, 2456, 2708
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	1726, 1872
Bsp13I	TCCGGA	2 cut(s)	1975, 2290
Bsp1407I	TGTACA	1 cut(s)	2607
Bsp143I	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
Bsp19I	CCATGG	1 cut(s)	1410
BspANI	GGCC	7 cut(s)	494, 552, 715, 814, 1523, 2456, 2708
BspCNI	CTCAG	4 cut(s)	229, 2437, 2440, 2569
BspEI	TCCGGA	2 cut(s)	1975, 2290
BspFNI	CGCG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	1533
BspLI	GGNNCC	3 cut(s)	667, 2184, 2653
BspOI	GCTAGC	1 cut(s)	2175
BspPI	GGATC	3 cut(s)	314, 2352, 2546
BspT107I	GGYRCC	1 cut(s)	665
BspTI	CTTAAG	1 cut(s)	2375
BsrBI	CCGCTC	1 cut(s)	277
BsrDI	GCAATG	3 cut(s)	849, 1476, 2874
BsrFI	RCCGGY	1 cut(s)	1811
BsrGI	TGTACA	1 cut(s)	2607
BsrI	ACTGG	4 cut(s)	1941, 2074, 2346, 2709
BssAI	RCCGGY	1 cut(s)	1811
BssECI	CCNNGG	2 cut(s)	669, 1410
BssMI	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
BssNI	GRCGYC	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	1410
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	8 cut(s)	292, 390, 457, 507, 1054, 1681, 1916, 2299
Bst6I	CTCTTC	5 cut(s)	238, 1747, 1852, 2594, 2755
BstACI	GRCGYC	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	2375
BstAPI	GCANNNNNTGC	3 cut(s)	965, 2443, 2873
BstAUI	TGTACA	1 cut(s)	2607
BstBAI	YACGTR	2 cut(s)	1569, 2616
BstC8I	GCNNGC	3 cut(s)	2173, 2435, 2797
BstDEI	CTNAG	6 cut(s)	216, 1451, 1596, 2424, 2448, 2577
BstDSI	CCRYGG	1 cut(s)	1410
BstENI	CCTNNNNNAGG	1 cut(s)	2646
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	3 cut(s)	121, 668, 991
BstKTI	GATC	7 cut(s)	309, 954, 1396, 2001, 2347, 2554, 2836
BstMAI	GTCTC	2 cut(s)	1299, 2427
BstMBI	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 87, 965, 1784, 2443, 2873
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	4 cut(s)	485, 2062, 2771, 2799
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	2014
BstSLI	GKGCMC	2 cut(s)	1726, 1872
BstSNI	TACGTA	1 cut(s)	2616
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	6 cut(s)	65, 210, 463, 1493, 1657, 2804
BstX2I	RGATCY	2 cut(s)	2551, 2833
BstYI	RGATCY	2 cut(s)	2551, 2833
BstZI	CGGCCG	1 cut(s)	492
BsuRI	GGCC	7 cut(s)	494, 552, 715, 814, 1523, 2456, 2708
BtgI	CCRYGG	1 cut(s)	1410
BtsIMutI	CAGTG	3 cut(s)	288, 1934, 2716
Cac8I	GCNNGC	3 cut(s)	2173, 2435, 2797
CciI	TCATGA	1 cut(s)	1533
CfoI	GCGC	3 cut(s)	121, 668, 991
Cfr10I	RCCGGY	1 cut(s)	1811
Cfr13I	GGNCC	3 cut(s)	551, 812, 2455
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	5 cut(s)	146, 332, 1696, 2167, 2608
CspCI	CAANNNNNGTGG	2 cut(s)	1715, 1750
CviQI	GTAC	5 cut(s)	146, 332, 1696, 2167, 2608
DdeI	CTNAG	6 cut(s)	216, 1451, 1596, 2424, 2448, 2577
DinI	GGCGCC	1 cut(s)	667
DpnI	GATC	7 cut(s)	308, 953, 1395, 2000, 2346, 2553, 2835
DpnII	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
DraI	TTTAAA	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	492, 2706
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	5 cut(s)	238, 1747, 1852, 2594, 2755
EarI	CTCTTC	5 cut(s)	238, 1747, 1852, 2594, 2755
EclXI	CGGCCG	1 cut(s)	492
Eco105I	TACGTA	1 cut(s)	2616
Eco130I	CCWWGG	1 cut(s)	1410
Eco147I	AGGCCT	1 cut(s)	1523
Eco32I	GATATC	3 cut(s)	1366, 2086, 2191
Eco52I	CGGCCG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	553
EcoNI	CCTNNNNNAGG	1 cut(s)	2646
EcoO109I	RGGNCCY	2 cut(s)	812, 2455
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	302
EcoRV	GATATC	3 cut(s)	1366, 2086, 2191
EcoT14I	CCWWGG	1 cut(s)	1410
EcoT22I	ATGCAT	1 cut(s)	2217
EgeI	GGCGCC	1 cut(s)	667
EheI	GGCGCC	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	1410
FalI	AAGNNNNNCTT	2 cut(s)	1592, 1624
FaqI	GGGAC	1 cut(s)	1100
FauI	CCCGC	1 cut(s)	1311
FauNDI	CATATG	1 cut(s)	1831
FbaI	TGATCA	1 cut(s)	1998
FblI	GTMKAC	1 cut(s)	2017
Fnu4HI	GCNGC	9 cut(s)	79, 91, 199, 278, 477, 492, 1482, 1671, 2793
Fsp4HI	GCNGC	9 cut(s)	79, 91, 199, 278, 477, 492, 1482, 1671, 2793
FspBI	CTAG	5 cut(s)	23, 41, 428, 2172, 2684
GlaI	GCGC	3 cut(s)	120, 667, 990
GluI	GCNGC	9 cut(s)	79, 91, 199, 278, 477, 492, 1482, 1671, 2793
GsuI	CTGGAG	1 cut(s)	1224
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	7 cut(s)	494, 552, 715, 814, 1523, 2456, 2708
HapII	CCGG	6 cut(s)	87, 111, 926, 1812, 1976, 2291
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	3 cut(s)	121, 668, 991
Hin1I	GRCGYC	1 cut(s)	666
Hin6I	GCGC	3 cut(s)	119, 666, 989
HinP1I	GCGC	3 cut(s)	119, 666, 989
HincII	GTYRAC	2 cut(s)	2076, 2335
HindII	GTYRAC	2 cut(s)	2076, 2335
HindIII	AAGCTT	1 cut(s)	1100
HinfI	GANTC	8 cut(s)	461, 608, 736, 847, 1349, 2257, 2479, 2813
HpaI	GTTAAC	1 cut(s)	2076
HpaII	CCGG	6 cut(s)	87, 111, 926, 1812, 1976, 2291
HphI	GGTGA	5 cut(s)	122, 125, 776, 913, 1721
Hpy166II	GTNNAC	7 cut(s)	63, 148, 923, 1028, 2018, 2076, 2335
Hpy188I	TCNGA	5 cut(s)	613, 1137, 1664, 2472, 2656
Hpy8I	GTNNAC	7 cut(s)	63, 148, 923, 1028, 2018, 2076, 2335
Hpy99I	CGWCG	1 cut(s)	126
HpyCH4III	ACNGT	8 cut(s)	292, 390, 457, 507, 1054, 1681, 1916, 2299
HpyCH4IV	ACGT	2 cut(s)	1568, 2615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 87, 965, 1784, 2443, 2873
HpyF3I	CTNAG	6 cut(s)	216, 1451, 1596, 2424, 2448, 2577
HpySE526I	ACGT	2 cut(s)	1568, 2615
Hsp92I	GRCGYC	1 cut(s)	666
HspAI	GCGC	3 cut(s)	119, 666, 989
KasI	GGCGCC	1 cut(s)	665
Kpn2I	TCCGGA	2 cut(s)	1975, 2290
Ksp22I	TGATCA	1 cut(s)	1998
KspAI	GTTAAC	1 cut(s)	2076
Kzo9I	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
LmnI	GCTCC	1 cut(s)	2804
Lsp1109I	GCAGC	6 cut(s)	65, 210, 463, 1493, 1657, 2804
LweI	GCATC	8 cut(s)	976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
MaeI	CTAG	5 cut(s)	23, 41, 428, 2172, 2684
MaeII	ACGT	2 cut(s)	1568, 2615
MaeIII	GTNAC	7 cut(s)	286, 894, 1039, 1604, 2089, 2299, 2401
MalI	GATC	7 cut(s)	308, 953, 1395, 2000, 2346, 2553, 2835
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
MflI	RGATCY	2 cut(s)	2551, 2833
MhlI	GDGCHC	2 cut(s)	1726, 1872
Mly113I	GGCGCC	1 cut(s)	666
MlyI	GAGTC	3 cut(s)	470, 617, 2488
MmeI	TCCRAC	5 cut(s)	261, 591, 1380, 1482, 1923
Mph1103I	ATGCAT	1 cut(s)	2217
MroI	TCCGGA	2 cut(s)	1975, 2290
MroXI	GAANNNNTTC	2 cut(s)	389, 2060
MslI	CAYNNNNRTG	2 cut(s)	1994, 2315
MspA1I	CMGCKG	2 cut(s)	728, 983
MspCI	CTTAAG	1 cut(s)	2375
MspI	CCGG	6 cut(s)	87, 111, 926, 1812, 1976, 2291
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	6 cut(s)	12, 87, 965, 1784, 2443, 2873
NarI	GGCGCC	1 cut(s)	666
NcoI	CCATGG	1 cut(s)	1410
NdeI	CATATG	1 cut(s)	1831
NdeII	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
NheI	GCTAGC	1 cut(s)	2171
NlaIV	GGNNCC	3 cut(s)	667, 2184, 2653
NmeAIII	GCCGAG	3 cut(s)	694, 741, 2684
NmuCI	GTSAC	2 cut(s)	286, 2089
NsiI	ATGCAT	1 cut(s)	2217
NspI	RCATGY	4 cut(s)	485, 2062, 2771, 2799
PaeI	GCATGC	1 cut(s)	2799
PagI	TCATGA	1 cut(s)	1533
PceI	AGGCCT	1 cut(s)	1523
PciI	ACATGT	2 cut(s)	481, 2058
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	2 cut(s)	389, 2060
PfeI	GAWTC	5 cut(s)	736, 847, 1349, 2257, 2813
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	9 cut(s)	80, 92, 200, 279, 478, 493, 1483, 1672, 2794
PleI	GAGTC	3 cut(s)	469, 616, 2487
PluTI	GGCGCC	1 cut(s)	669
PpsI	GAGTC	3 cut(s)	469, 616, 2487
Ppu21I	YACGTR	2 cut(s)	1569, 2616
PscI	ACATGT	2 cut(s)	481, 2058
PshBI	ATTAAT	2 cut(s)	2043, 2105
PsiI	TTATAA	1 cut(s)	942
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	667, 2184, 2653
PspPI	GGNCC	3 cut(s)	551, 812, 2455
PsuI	RGATCY	2 cut(s)	2551, 2833
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	5 cut(s)	147, 333, 1697, 2168, 2609
RsaNI	GTAC	5 cut(s)	146, 332, 1696, 2167, 2608
RseI	CAYNNNNRTG	2 cut(s)	1994, 2315
SatI	GCNGC	9 cut(s)	79, 91, 199, 278, 477, 492, 1482, 1671, 2793
Sau3AI	GATC	7 cut(s)	306, 951, 1393, 1998, 2344, 2551, 2833
Sau96I	GGNCC	3 cut(s)	551, 812, 2455
SchI	GAGTC	3 cut(s)	470, 617, 2488
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	2 cut(s)	1726, 1872
SfaNI	GCATC	8 cut(s)	976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
SfcI	CTRYAG	1 cut(s)	2014
SfoI	GGCGCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	1994, 2315
SmlI	CTYRAG	4 cut(s)	140, 335, 516, 2375
SmoI	CTYRAG	4 cut(s)	140, 335, 516, 2375
SnaBI	TACGTA	1 cut(s)	2616
SphI	GCATGC	1 cut(s)	2799
SseBI	AGGCCT	1 cut(s)	1523
SspDI	GGCGCC	1 cut(s)	665
SspI	AATATT	1 cut(s)	2520
SspMI	CTAG	5 cut(s)	23, 41, 428, 2172, 2684
StuI	AGGCCT	1 cut(s)	1523
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	1410
TaaI	ACNGT	8 cut(s)	292, 390, 457, 507, 1054, 1681, 1916, 2299
TaiI	ACGT	2 cut(s)	1571, 2618
TaqI	TCGA	3 cut(s)	1805, 2245, 2276
TatI	WGTACW	2 cut(s)	331, 2607
TauI	GCSGC	3 cut(s)	93, 280, 494
TfiI	GAWTC	5 cut(s)	736, 847, 1349, 2257, 2813
TscAI	CASTG	3 cut(s)	295, 1941, 2716
TseFI	GTSAC	2 cut(s)	286, 2089
TseI	GCWGC	6 cut(s)	78, 198, 476, 1481, 1670, 2792
Tsp45I	GTSAC	2 cut(s)	286, 2089
TspGWI	ACGGA	1 cut(s)	2224
TspRI	CASTG	3 cut(s)	295, 1941, 2716
Vha464I	CTTAAG	1 cut(s)	2375
VspI	ATTAAT	2 cut(s)	2043, 2105
XagI	CCTNNNNNAGG	1 cut(s)	2646
XapI	RAATTY	4 cut(s)	68, 911, 2150, 2730
XceI	RCATGY	4 cut(s)	485, 2062, 2771, 2799
XmiI	GTMKAC	1 cut(s)	2017
XmnI	GAANNNNTTC	2 cut(s)	389, 2060
XspI	CTAG	5 cut(s)	23, 41, 428, 2172, 2684
Zsp2I	ATGCAT	1 cut(s)	2217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.