Rh4CG149300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004858
Physical Location & Seq
Forward (+)
32939971 .. 32941350
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG149300.1

Sequence Viewer

Length: 1380 bp
ATGTCCGGTGAGGCGCGTCACCTTCACCCTTCTCTTAAGGTACACTATTACCACACTCTCAACTCCCGACCCACCTCTGATTTTCACAGCAGCTTTGATTATCTCACTCAGTTCTTGCCATTCTCTTCTAACAAACCCATTTCCCAATGCTCTATAAACTCCAATGAGTGGCGTAAAGTCACTGTTGGGTTATCCAGGATCATAAAGAACGAACAGGGCTATGTACTGAAGGGCTTTTCCAGAACCTTCTGCCCATTTTTTCTTGTAAAGATTATGAAACTATTTTGTTGTAGAGAAACTGCATTTGGGTTCTTTAAGTTAGCCTTTAGGGATGATAATCAGCAGACTGTGGAGTCATGTTGTGTGGCTGCACATGTTTTGACGGCCGAAAATCTACTGTTTCTAGCTCAAGATGTGGTTTCGTGTGTGATTGGGAGGATTGGGCCGAGTAGGAGTAGGGATTTGGTGGGGTTTATGTGGGGAGGGCATTGTGAATACGAGTCGGATTTTTCGGTTCTTGATACACTAATGAGGGGGTTCTTGAATGCGGAAATGGGCGCCGAGGCTTTAGAGGTTTTGAGGAGGATGAGGGAGGTGGGAGTGAGGCCGAGCTTGTCAGCGGTTGCGATTCTGTTCAGGTTGTTGATAAGGGTTGGTGTTTGTGGTAGTCTGTGGAAGGTGTTTAGGGATATGATTAGAGAATGGCCTTATCCATGTAATTATGTTTTTAGTGCAATGATTCTTGGGTTTTGTCGAAAAGGGTTGGTTAGAGTTGGGGAGAGTTTGTTACAGGTGATGTGGAAATTCCAATATGAACCGGATGTTTTTGCTTATAATATTGTGATCTATGCAAATTGTGCGGGAGGGCAGACAGTTGATACACTTGAATGGGTGGAGTTGATGATTGCGAGAGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCATTGTGTAAGGAAGAAAATGTGGTGGAGGCAAGGAAGTTTTTTGATGACGTCCCAGACATGGGTGTTTTTCCTAATACCATAATGTACAATACCATGATGGATGAGTATGTTAAGGCAAGGGAGATTGATCAGGCTAGCATGCTTTTTGAAGAAATGAGGAAGAAGAGCATTTCTCCAGATGGCATAACTTTCAATATCATGATTGGAGGGCATTACAAGTATGGAAGCGAAGATGATGGAGACAGGTTGTTGCGGGATTTATCTGTGTCAGTATTACTTCCAGATTCTTCGTTGTATGATATCTATGTTTCTGTGTTGTGTTGGGCAGATCGGTTGGACGATGTCATGTCAGTTTTAGAGGATATGCTTGAAAGAATCGCCTCTAAGTGTGGTCGCTTTCAACTCTGTTATTGCAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

459

Amino Acids

52.39

Weight (kDa)

5.98

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 273 - 322 1.7e-10 PPR repeat family
PPR_1 PF12854 304 - 335 2.8e-10 PPR repeat
PPR_2 PF13041 308 - 345 2.2e-08 PPR repeat family
PPR_3 PF13812 333 - 388 4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 339 - 372 1.4e-06 PPR repeat
PPR_2 PF13041 343 - 391 4.1e-16 PPR repeat family
PPR PF01535 346 - 375 5.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
AasI GACNNNNNNGTC 1 cut(s) 352
AatII GACGTC 1 cut(s) 1008
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 1 cut(s) 16
AciI CCGC 4 cut(s) 548, 620, 860, 1210
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 803
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 2 cut(s) 558, 1005
AfaI GTAC 3 cut(s) 42, 225, 1043
AfiI CCNNNNNNNGG 3 cut(s) 168, 1015, 1016
AflII CTTAAG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 6 cut(s) 544, 887, 1106, 1150, 1328, 1358
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 93, 407, 612, 1374
AluI AGCT 4 cut(s) 93, 407, 612, 1374
Alw26I GTCTC 1 cut(s) 1191
AlwI GGATC 1 cut(s) 206
AoxI GGCC 4 cut(s) 384, 443, 605, 704
ApeKI GCWGC 3 cut(s) 90, 368, 1371
ApoI RAATTY 1 cut(s) 803
AspLEI GCGC 2 cut(s) 16, 560
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 4 cut(s) 11, 17, 20, 805
AsuNHI GCTAGC 1 cut(s) 1091
BanI GGYRCC 1 cut(s) 557
BbvI GCAGC 2 cut(s) 102, 355
BccI CCATC 3 cut(s) 1048, 1130, 1187
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 1 cut(s) 1084
BcoDI GTCTC 1 cut(s) 1191
BfaI CTAG 2 cut(s) 404, 1092
BfoI RGCGCY 1 cut(s) 561
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 91, 369, 1372
BlsI GCNGC 3 cut(s) 92, 370, 1373
Bme1390I CCNGG 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 1095
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
BpmI CTGGAG 1 cut(s) 1116
BpuEI CTTGAG 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 558, 1005
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 2 cut(s) 5, 817
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 1015, 1016
Bse3DI GCAATG 1 cut(s) 741
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 5 cut(s) 337, 591, 826, 920, 1063
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 168, 1015, 1016
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 595
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 2 cut(s) 102, 355
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 386, 445, 607, 706
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 6, 818
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 3 cut(s) 168, 1015, 1016
BsmAI GTCTC 1 cut(s) 1191
BsmFI GGGAC 1 cut(s) 992
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 4 cut(s) 386, 445, 607, 706
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 4 cut(s) 198, 843, 1084, 1285
BspACI CCGC 4 cut(s) 548, 620, 860, 1210
BspANI GGCC 4 cut(s) 386, 445, 607, 706
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 1 cut(s) 559
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 1115
BspT107I GGYRCC 1 cut(s) 557
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 741
BsrGI TGTACA 1 cut(s) 1041
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 198, 843, 1084, 1285
BssNI GRCGYC 2 cut(s) 558, 1005
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 5 cut(s) 184, 349, 399, 874, 946
Bst6I CTCTTC 2 cut(s) 130, 1115
BstACI GRCGYC 2 cut(s) 558, 1005
BstAFI CTTAAG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 1041
BstC8I GCNNGC 2 cut(s) 1093, 1097
BstDEI CTNAG 2 cut(s) 108, 1341
BstF5I GGATG 5 cut(s) 337, 591, 826, 920, 1063
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 2 cut(s) 16, 560
BstKTI GATC 4 cut(s) 201, 846, 1087, 1288
BstMAI GTCTC 1 cut(s) 1191
BstMBI GATC 4 cut(s) 198, 843, 1084, 1285
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 2 cut(s) 377, 1099
BstSCI CCNGG 1 cut(s) 194
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 102, 355
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 4 cut(s) 386, 445, 607, 706
BtsCI GGATG 5 cut(s) 337, 591, 826, 920, 1063
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 1093, 1097
CciI TCATGA 1 cut(s) 1155
CfoI GCGC 2 cut(s) 16, 560
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 1 cut(s) 5
Csp6I GTAC 3 cut(s) 41, 224, 1042
CviAII CATG 8 cut(s) 357, 374, 714, 1015, 1051, 1096, 1156, 1303
CviQI GTAC 3 cut(s) 41, 224, 1042
DdeI CTNAG 2 cut(s) 108, 1341
DinI GGCGCC 1 cut(s) 559
DpnI GATC 4 cut(s) 200, 845, 1086, 1287
DpnII GATC 4 cut(s) 198, 843, 1084, 1285
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 384
EagI CGGCCG 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 130, 1115
EarI CTCTTC 2 cut(s) 130, 1115
EclXI CGGCCG 1 cut(s) 384
Eco32I GATATC 1 cut(s) 1258
Eco52I CGGCCG 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 1258
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
FaeI CATG 8 cut(s) 360, 377, 717, 1018, 1054, 1099, 1159, 1306
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 1 cut(s) 992
FatI CATG 8 cut(s) 356, 373, 713, 1014, 1050, 1095, 1155, 1302
FauI CCCGC 2 cut(s) 853, 1203
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 3 cut(s) 91, 369, 1372
FokI GGATG 5 cut(s) 344, 598, 833, 927, 1070
Fsp4HI GCNGC 3 cut(s) 91, 369, 1372
FspBI CTAG 2 cut(s) 404, 1092
GlaI GCGC 2 cut(s) 15, 559
GluI GCNGC 3 cut(s) 91, 369, 1372
GsuI CTGGAG 1 cut(s) 1116
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 4 cut(s) 386, 445, 607, 706
HapII CCGG 2 cut(s) 6, 818
HgaI GACGC 1 cut(s) 5
HhaI GCGC 2 cut(s) 16, 560
Hin1I GRCGYC 2 cut(s) 558, 1005
Hin1II CATG 8 cut(s) 360, 377, 717, 1018, 1054, 1099, 1159, 1306
Hin6I GCGC 2 cut(s) 14, 558
HinP1I GCGC 2 cut(s) 14, 558
HinfI GANTC 6 cut(s) 353, 500, 628, 739, 1241, 1332
HpaII CCGG 2 cut(s) 6, 818
HphI GGTGA 4 cut(s) 11, 17, 20, 805
Hpy166II GTNNAC 2 cut(s) 43, 920
Hpy188I TCNGA 2 cut(s) 79, 505
Hpy188III TCNNGA 8 cut(s) 66, 240, 410, 518, 541, 1133, 1156, 1238
Hpy8I GTNNAC 2 cut(s) 43, 920
HpyAV CCTTC 5 cut(s) 32, 39, 223, 256, 670
HpyCH4III ACNGT 5 cut(s) 184, 349, 399, 874, 946
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 6 cut(s) 302, 371, 734, 851, 956, 1371
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 2 cut(s) 108, 1341
HpySE526I ACGT 1 cut(s) 1005
Hsp92I GRCGYC 2 cut(s) 558, 1005
Hsp92II CATG 8 cut(s) 360, 377, 717, 1018, 1054, 1099, 1159, 1306
HspAI GCGC 2 cut(s) 14, 558
KasI GGCGCC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 4 cut(s) 198, 843, 1084, 1285
LguI GCTCTTC 1 cut(s) 1115
Lsp1109I GCAGC 2 cut(s) 102, 355
MaeI CTAG 2 cut(s) 404, 1092
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 4 cut(s) 17, 178, 786, 931
MalI GATC 4 cut(s) 200, 845, 1086, 1287
MboI GATC 4 cut(s) 198, 843, 1084, 1285
MboII GAAGA 7 cut(s) 117, 980, 1118, 1129, 1132, 1199, 1236
MluCI AATT 3 cut(s) 718, 803, 853
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 2 cut(s) 362, 509
MmeI TCCRAC 2 cut(s) 483, 1272
MseI TTAA 4 cut(s) 36, 315, 939, 1068
MslI CAYNNNNRTG 1 cut(s) 886
MspA1I CMGCKG 1 cut(s) 620
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 2 cut(s) 6, 818
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 857
NarI GGCGCC 1 cut(s) 558
NdeII GATC 4 cut(s) 198, 843, 1084, 1285
NheI GCTAGC 1 cut(s) 1091
NlaIII CATG 8 cut(s) 360, 377, 717, 1018, 1054, 1099, 1159, 1306
NlaIV GGNNCC 1 cut(s) 559
NmeAIII GCCGAG 3 cut(s) 471, 586, 633
NmuCI GTSAC 2 cut(s) 17, 178
NspI RCATGY 2 cut(s) 377, 1099
PaeI GCATGC 1 cut(s) 1099
PagI TCATGA 1 cut(s) 1155
PciI ACATGT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 1115
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 628, 739, 1241, 1332
PflFI GACNNNGTC 1 cut(s) 1298
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 3 cut(s) 92, 370, 1373
PleI GAGTC 2 cut(s) 361, 508
PluTI GGCGCC 1 cut(s) 561
PpsI GAGTC 2 cut(s) 361, 508
PscI ACATGT 1 cut(s) 373
PsiI TTATAA 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 1298
RsaI GTAC 3 cut(s) 42, 225, 1043
RsaNI GTAC 3 cut(s) 41, 224, 1042
RseI CAYNNNNRTG 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 1115
SaqAI TTAA 4 cut(s) 36, 315, 939, 1068
SatI GCNGC 3 cut(s) 91, 369, 1372
Sau3AI GATC 4 cut(s) 198, 843, 1084, 1285
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 2 cut(s) 362, 509
ScrFI CCNGG 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 886
SmlI CTYRAG 2 cut(s) 35, 408
SmoI CTYRAG 2 cut(s) 35, 408
SphI GCATGC 1 cut(s) 1099
Sse9I AATT 3 cut(s) 718, 803, 853
SsiI CCGC 4 cut(s) 548, 620, 860, 1210
SspDI GGCGCC 1 cut(s) 557
SspI AATATT 1 cut(s) 838
SspMI CTAG 2 cut(s) 404, 1092
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 5 cut(s) 184, 349, 399, 874, 946
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 1 cut(s) 754
TasI AATT 3 cut(s) 718, 803, 853
TatI WGTACW 2 cut(s) 223, 1041
TfiI GAWTC 4 cut(s) 628, 739, 1241, 1332
Tru1I TTAA 4 cut(s) 36, 315, 939, 1068
Tru9I TTAA 4 cut(s) 36, 315, 939, 1068
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 17, 178
TseI GCWGC 3 cut(s) 90, 368, 1371
Tsp45I GTSAC 2 cut(s) 17, 178
TspDTI ATGAA 2 cut(s) 290, 828
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 1298
Van91I CCANNNNNTGG 1 cut(s) 168
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 1 cut(s) 803
XceI RCATGY 2 cut(s) 377, 1099
XspI CTAG 2 cut(s) 404, 1092
ZraI GACGTC 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.