Rh7CG308400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004858
Physical Location & Seq
Forward (+)
32483996 .. 32485824
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG308400.1

Sequence Viewer

Length: 1767 bp
ATGTCCGGTGAGGCGCGTCGCCTTCACCCTTCTCTCAAGGTACACTATTATCACACTCTCAACTCCTCCCGACCCACCTCTGGTTTTCACAGCAGCTTTGATTATCTCACTCAGTTCTTGCCATTCTCTTCTAACAAACCCAATTCCAGATCCTCTATAAACTCCAATGAGCGGCGTAAAGTCACTGTTGGGTTATCCAGGATCATAAAGAACCAACAGGGCTATGTACTGAAGGGCTTTTCCAGAACCTTCTGCCCATTTTTTCTTGTAAAGATTATGAAACTGTTCTGTTGTAGAGAAACTGCATTTGGGTTCTTTAAACTAGCCTTTAGGGATGATAATCAGCAGACTGTGGAGTCATGTTGTGTGGCTGCACATGTTTTGGCGGCCGAAAATCTACGGTTTCTGGCTCAAGATGTGGTTTCGTGTGTCATTGGGAGGATTGGGCCGAGTAGGAGTAGGGATTTGGTGGGGTTTATGTGGGGACGGCATTGTGAATACGAGTCGGATTTTTCGGTTCTTGATACACTACTGAGGGGGTTCTTGAATGCGGAAATGGGCGCCGAGGCTTTGGAAGTTTTGAGGAGGATGAGGGAGGTGGGAGTGAGGCCGAGTTTGTCAGCGGTTGCGATTCTGTTCTGGTTGTTGATAAGGGTTGGTGATTATGGAAGTGTGTGGAAGGTGTTTAGGGATATGATTAGAGAAGGGCCTCCTTATCCATGTAATTATGTTTTTAGTGCAATGATTCTTGGGTTTTGTCGAAAAGGGTTGGTTAGAGTTGGGGAGAGTTTGTTACAGGTGATGTGGAAATTCCAATGTGAACCGGATGTTTTTGCTTATAACATTGTCATCTATGCAAATTGTGCGAGAGGGCAGACAGCTGATGCGCTTGAATGGGTGGAGTTGATGATTGCGAGGGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCATTGTGTAAGGAAGGAAATGTGGTGGAGGCAAGGAAGCTTTTTGATGATGTCCCAGACATGGGTGTTTATCCGAATACCATAATGTACAATACCATGATGGATGGGTATGTTAAGGCAAGGGAGATTGGTCAGGCTAACACGCTTTTTGAAGAAATGAGAAACAAGAGCATTTCTCCAGATGGCATACCTTTCAATATCTTGATTGGAGGGCATTACAAGTATGGAAGCGAAGATGATGGAGACAGGTTGTTGCGGGATTTATTTGTGTCAGGATTACTTCCAGATTCTTCATTGTATGATATCTATGTTTCTGTGTTGTGTTGGGCAGATCGGTTGGACGATGCCATGGCAGTTTTAGAGGATATGCTTGAAAGAGGATTGCCTCTAAGTGTGGTCGCTTTCAACTCTGTCATTGCAGCTTGTAGCAGAGTAGGGTTGGAAGAAAAAGCATATAAGGCCTTTAACTTCATGATTTCATTTGGTATAACTCCTTCATCTTCTACATGTAGTTCTTTGCTTATGGGTTTATCTAAGAAGGGTTACTTGCAAGAAGCCAGAGAGCTTTTGTGTAAAATGATGGAGAAGGGGTTTCCTATCAGAAAAGCTGCTTTTACGGTGCTTTTGGATGGGTACTTTAGGATGGGTGATTTAGATGGGGCACAAAGTTTGTGGAATGAGATGGAAGGAAGAGGCATATCTCCTGATGTTGTTGCCTTTTCAGCATTTATCAATGGACTATCTAAAGCCAATTTAATGGAAGAAGCATATGATATGTTTCAAGAAATGTCAAGAAGAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

588

Amino Acids

66.25

Weight (kDa)

7.01

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 240 - 288 1.7e-06 PPR repeat family
PPR_3 PF13812 265 - 322 1.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 275 - 324 8.3e-13 PPR repeat family
PPR_1 PF12854 306 - 337 4.9e-12 PPR repeat
PPR_2 PF13041 310 - 347 1.8e-09 PPR repeat family
PPR PF01535 313 - 343 5.4e-07 PPR repeat
PPR_3 PF13812 333 - 390 2.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 341 - 374 9.9e-06 PPR repeat
PPR_2 PF13041 345 - 393 1.3e-12 PPR repeat family
PPR PF01535 348 - 377 5.6e-06 PPR repeat
PPR_long PF17177 433 - 587 4.9e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 436 - 547 3.3e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 451 - 499 5.9e-08 PPR repeat family
PPR PF01535 524 - 553 7e-06 PPR repeat
PPR_2 PF13041 524 - 569 1.2e-11 PPR repeat family
PPR_1 PF12854 551 - 584 2.6e-08 PPR repeat
PPR_2 PF13041 555 - 586 2.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AasI GACNNNNNNGTC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 1 cut(s) 16
AciI CCGC 5 cut(s) 172, 386, 551, 623, 1216
AclWI GGATC 2 cut(s) 144, 209
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 809
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 4 cut(s) 42, 228, 1049, 1595
AfiI CCNNNNNNNGG 4 cut(s) 80, 171, 1021, 1022
AflIII ACRYGT 2 cut(s) 376, 1466
AgsI TTSAA 7 cut(s) 547, 893, 1112, 1156, 1334, 1366, 1742
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 6 cut(s) 96, 881, 1000, 1382, 1525, 1568
AluI AGCT 6 cut(s) 96, 881, 1000, 1382, 1525, 1568
Alw26I GTCTC 1 cut(s) 1197
AlwI GGATC 2 cut(s) 144, 209
AoxI GGCC 5 cut(s) 387, 446, 608, 707, 1419
ApeKI GCWGC 4 cut(s) 93, 371, 1379, 1568
ApoI RAATTY 1 cut(s) 809
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 3 cut(s) 16, 563, 889
AspS9I GGNCC 2 cut(s) 446, 707
AsuHPI GGTGA 5 cut(s) 17, 20, 671, 811, 1619
BaeGI GKGCMC 1 cut(s) 1624
BanI GGYRCC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 1438, 1470
BbvI GCAGC 4 cut(s) 105, 358, 1391, 1555
BccI CCATC 9 cut(s) 1054, 1058, 1136, 1193, 1534, 1583, 1597, 1610, 1636
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 1197
BfaI CTAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 564
BisI GCNGC 6 cut(s) 94, 173, 372, 387, 1380, 1569
BlsI GCNGC 6 cut(s) 95, 174, 373, 388, 1381, 1570
Bme1390I CCNGG 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 446, 707
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 874, 1294
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
BpmI CTGGAG 1 cut(s) 1122
BpuEI CTTGAG 2 cut(s) 20, 396
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 564, 1308
BsaWI WCCGGW 2 cut(s) 5, 823
BsaXI ACNNNNNCTCC 4 cut(s) 776, 806, 1535, 1565
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 171, 1021, 1022
Bse3DI GCAATG 2 cut(s) 747, 1374
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 564, 1308
BseGI GGATG 7 cut(s) 340, 594, 832, 926, 1069, 1594, 1608
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 80, 171, 1021, 1022
BseMI GCAATG 2 cut(s) 747, 1374
BseMII CTCAG 2 cut(s) 125, 524
BseRI GAGGAG 2 cut(s) 55, 598
BseSI GKGCMC 1 cut(s) 1624
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 4 cut(s) 105, 358, 1391, 1555
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 5 cut(s) 389, 448, 610, 709, 1421
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 390
BsiSI CCGG 2 cut(s) 6, 824
BslFI GGGAC 2 cut(s) 498, 998
BslI CCNNNNNNNGG 4 cut(s) 80, 171, 1021, 1022
BsmAI GTCTC 1 cut(s) 1197
BsmFI GGGAC 2 cut(s) 498, 998
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 5 cut(s) 389, 448, 610, 709, 1421
Bsp1286I GDGCHC 1 cut(s) 1624
Bsp1407I TGTACA 1 cut(s) 1047
Bsp143I GATC 3 cut(s) 149, 201, 1291
Bsp19I CCATGG 1 cut(s) 1308
BspACI CCGC 5 cut(s) 172, 386, 551, 623, 1216
BspANI GGCC 5 cut(s) 389, 448, 610, 709, 1421
BspCNI CTCAG 2 cut(s) 124, 525
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 1431
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 2 cut(s) 144, 209
BspT107I GGYRCC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 747, 1374
BsrGI TGTACA 1 cut(s) 1047
BssECI CCNNGG 2 cut(s) 564, 1308
BssMI GATC 3 cut(s) 149, 201, 1291
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 1308
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 6 cut(s) 187, 285, 352, 402, 952, 1579
Bst6I CTCTTC 3 cut(s) 133, 1645, 1750
BstACI GRCGYC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 863
BstAUI TGTACA 1 cut(s) 1047
BstDEI CTNAG 4 cut(s) 111, 533, 1349, 1494
BstDSI CCRYGG 1 cut(s) 1308
BstF5I GGATG 7 cut(s) 340, 594, 832, 926, 1069, 1594, 1608
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 3 cut(s) 16, 563, 889
BstKTI GATC 3 cut(s) 152, 204, 1294
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 3 cut(s) 149, 201, 1291
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 863, 1418, 1682
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 380, 1470
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 1624
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 105, 358, 1391, 1555
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 1717
BstYI RGATCY 1 cut(s) 149
BstZI CGGCCG 1 cut(s) 387
BsuRI GGCC 5 cut(s) 389, 448, 610, 709, 1421
BtgI CCRYGG 1 cut(s) 1308
BtsCI GGATG 7 cut(s) 340, 594, 832, 926, 1069, 1594, 1608
BtsIMutI CAGTG 1 cut(s) 183
CciI TCATGA 1 cut(s) 1431
CfoI GCGC 3 cut(s) 16, 563, 889
Cfr13I GGNCC 2 cut(s) 446, 707
CseI GACGC 1 cut(s) 5
Csp6I GTAC 4 cut(s) 41, 227, 1048, 1594
CspCI CAANNNNNGTGG 2 cut(s) 1613, 1648
CviAII CATG 8 cut(s) 360, 377, 720, 1021, 1057, 1309, 1432, 1467
CviQI GTAC 4 cut(s) 41, 227, 1048, 1594
DdeI CTNAG 4 cut(s) 111, 533, 1349, 1494
DinI GGCGCC 1 cut(s) 562
DpnI GATC 3 cut(s) 151, 203, 1293
DpnII GATC 3 cut(s) 149, 201, 1291
DraI TTTAAA 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 387
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 3 cut(s) 133, 1645, 1750
EarI CTCTTC 3 cut(s) 133, 1645, 1750
EclXI CGGCCG 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 1308
Eco147I AGGCCT 1 cut(s) 1421
Eco32I GATATC 1 cut(s) 1264
Eco52I CGGCCG 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 707
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 1264
EcoT14I CCWWGG 1 cut(s) 1308
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 1308
FaeI CATG 8 cut(s) 363, 380, 723, 1024, 1060, 1312, 1435, 1470
FalI AAGNNNNNCTT 2 cut(s) 1490, 1522
FaqI GGGAC 2 cut(s) 498, 998
FatI CATG 8 cut(s) 359, 376, 719, 1020, 1056, 1308, 1431, 1466
FauI CCCGC 1 cut(s) 1209
FauNDI CATATG 1 cut(s) 1729
Fnu4HI GCNGC 6 cut(s) 94, 173, 372, 387, 1380, 1569
FokI GGATG 7 cut(s) 347, 601, 839, 933, 1076, 1601, 1615
Fsp4HI GCNGC 6 cut(s) 94, 173, 372, 387, 1380, 1569
FspBI CTAG 1 cut(s) 323
GlaI GCGC 3 cut(s) 15, 562, 888
GluI GCNGC 6 cut(s) 94, 173, 372, 387, 1380, 1569
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 5 cut(s) 389, 448, 610, 709, 1421
HapII CCGG 2 cut(s) 6, 824
HgaI GACGC 1 cut(s) 5
HhaI GCGC 3 cut(s) 16, 563, 889
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 8 cut(s) 363, 380, 723, 1024, 1060, 1312, 1435, 1470
Hin6I GCGC 3 cut(s) 14, 561, 887
HinP1I GCGC 3 cut(s) 14, 561, 887
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 5 cut(s) 356, 503, 631, 745, 1247
HpaII CCGG 2 cut(s) 6, 824
HphI GGTGA 5 cut(s) 17, 20, 671, 811, 1619
Hpy166II GTNNAC 3 cut(s) 43, 821, 926
Hpy188I TCNGA 3 cut(s) 508, 1035, 1562
Hpy8I GTNNAC 3 cut(s) 43, 821, 926
Hpy99I CGWCG 1 cut(s) 21
HpyCH4III ACNGT 6 cut(s) 187, 285, 352, 402, 952, 1579
HpyCH4V TGCA 7 cut(s) 305, 374, 740, 857, 962, 1379, 1510
HpyF10VI GCNNNNNNNGC 3 cut(s) 863, 1418, 1682
HpyF3I CTNAG 4 cut(s) 111, 533, 1349, 1494
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 8 cut(s) 363, 380, 723, 1024, 1060, 1312, 1435, 1470
HspAI GCGC 3 cut(s) 14, 561, 887
KasI GGCGCC 1 cut(s) 560
Kzo9I GATC 3 cut(s) 149, 201, 1291
Lsp1109I GCAGC 4 cut(s) 105, 358, 1391, 1555
LweI GCATC 2 cut(s) 874, 1294
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 4 cut(s) 181, 792, 937, 1502
MalI GATC 3 cut(s) 151, 203, 1293
MbiI CCGCTC 1 cut(s) 172
MboI GATC 3 cut(s) 149, 201, 1291
MboII GAAGA 9 cut(s) 120, 1124, 1205, 1242, 1415, 1452, 1662, 1733, 1767
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 1624
MluCI AATT 5 cut(s) 142, 724, 809, 859, 1711
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 2 cut(s) 365, 512
MmeI TCCRAC 3 cut(s) 486, 1278, 1380
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 5 cut(s) 318, 945, 1074, 1425, 1715
MspA1I CMGCKG 2 cut(s) 623, 881
MspI CCGG 2 cut(s) 6, 824
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 863, 1418, 1682
NarI GGCGCC 1 cut(s) 561
NcoI CCATGG 1 cut(s) 1308
NdeI CATATG 1 cut(s) 1729
NdeII GATC 3 cut(s) 149, 201, 1291
NlaIII CATG 8 cut(s) 363, 380, 723, 1024, 1060, 1312, 1435, 1470
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 3 cut(s) 474, 589, 636
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 2 cut(s) 380, 1470
PagI TCATGA 1 cut(s) 1431
PceI AGGCCT 1 cut(s) 1421
PciI ACATGT 2 cut(s) 376, 1466
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 631, 745, 1247
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 6 cut(s) 95, 174, 373, 388, 1381, 1570
PleI GAGTC 2 cut(s) 364, 511
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 2 cut(s) 364, 511
PscI ACATGT 2 cut(s) 376, 1466
PsiI TTATAA 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 446, 707
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 4 cut(s) 42, 228, 1049, 1595
RsaNI GTAC 4 cut(s) 41, 227, 1048, 1594
SaqAI TTAA 5 cut(s) 318, 945, 1074, 1425, 1715
SatI GCNGC 6 cut(s) 94, 173, 372, 387, 1380, 1569
Sau3AI GATC 3 cut(s) 149, 201, 1291
Sau96I GGNCC 2 cut(s) 446, 707
SchI GAGTC 2 cut(s) 365, 512
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 1624
SfaNI GCATC 2 cut(s) 874, 1294
SfoI GGCGCC 1 cut(s) 562
SmlI CTYRAG 2 cut(s) 35, 411
SmoI CTYRAG 2 cut(s) 35, 411
Sse9I AATT 5 cut(s) 142, 724, 809, 859, 1711
SseBI AGGCCT 1 cut(s) 1421
SsiI CCGC 5 cut(s) 172, 386, 551, 623, 1216
SspDI GGCGCC 1 cut(s) 560
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 1421
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 1308
TaaI ACNGT 6 cut(s) 187, 285, 352, 402, 952, 1579
TaqI TCGA 1 cut(s) 760
TasI AATT 5 cut(s) 142, 724, 809, 859, 1711
TatI WGTACW 2 cut(s) 226, 1047
TauI GCSGC 2 cut(s) 175, 389
TfiI GAWTC 3 cut(s) 631, 745, 1247
Tru1I TTAA 5 cut(s) 318, 945, 1074, 1425, 1715
Tru9I TTAA 5 cut(s) 318, 945, 1074, 1425, 1715
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 4 cut(s) 93, 371, 1379, 1568
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 293, 1242, 1420, 1428, 1446
TspRI CASTG 1 cut(s) 190
XapI RAATTY 1 cut(s) 809
XceI RCATGY 2 cut(s) 380, 1470
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.