Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g25080 |
| malus_domestica | MD02G1222500.v1.1 MD07G1092900.v1.1 MD07G1093100.v1.1 |
| prunus_persica | Prupe.1G180300_v2.0.a1 |
| pyrus_communis | pycom07g07630 |
| rosa_chinensis | RchiOBHm_Chr4g0407101 RchiOBHm_Chr4g0407111 RchiOBHm_Chr7g0215291 |
| rosa_laevigata | RLG00000002673 RLG00000008854 |
| rosa_multiflora | Rmu_co8487181.1_g000001 Rmu_sc0002701.1_g000058 Rmu_ssc0000126.1_g000065 |
| rosa_roxburghii | Rroxscaffold_3G00244320 Rroxscaffold_6G00393890 |
| rosa_rugosa | Rorug07G0151900 Rorug07G0152000 |
| rosa_samantha | Rh4AG142800 Rh4BG121000 Rh4CG149300 Rh4CG149400 Rh4DG124200 Rh7AG288500 Rh7AG288700 Rh7BG280700 Rh7CG308400 Rh7CG308500 Rh7DG292200 |
| rosa_wichuraiana | Rw7G024670 Rw7G024680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 157 |
| AciI | CCGC | 3 cut(s) | 42, 231, 298 |
| AclWI | GGATC | 2 cut(s) | 219, 413 |
| AcsI | RAATTY | 1 cut(s) | 17 |
| AfaI | GTAC | 1 cut(s) | 35 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 304, 330, 331, 460 |
| AluBI | AGCT | 3 cut(s) | 116, 136, 275 |
| AluI | AGCT | 3 cut(s) | 116, 136, 275 |
| Alw26I | GTCTC | 1 cut(s) | 294 |
| AlwI | GGATC | 2 cut(s) | 219, 413 |
| Aor13HI | TCCGGA | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 1 cut(s) | 488 |
| ApoI | RAATTY | 1 cut(s) | 17 |
| AspS9I | GGNCC | 1 cut(s) | 322 |
| AsuNHI | GCTAGC | 1 cut(s) | 38 |
| BbvI | GCAGC | 1 cut(s) | 500 |
| BccI | CCATC | 2 cut(s) | 39, 569 |
| BcoDI | GTCTC | 1 cut(s) | 294 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BglII | AGATCT | 1 cut(s) | 529 |
| BisI | GCNGC | 1 cut(s) | 489 |
| BlsI | GCNGC | 1 cut(s) | 490 |
| BmgT120I | GGNCC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 1 cut(s) | 51 |
| BmsI | GCATC | 5 cut(s) | 69, 300, 485, 551, 559 |
| BmtI | GCTAGC | 1 cut(s) | 42 |
| BsaBI | GATNNNNATC | 1 cut(s) | 541 |
| BsaWI | WCCGGW | 1 cut(s) | 157 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 304, 330, 331, 460 |
| Bse1I | ACTGG | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 2 cut(s) | 471, 570 |
| Bse8I | GATNNNNATC | 1 cut(s) | 541 |
| BseAI | TCCGGA | 1 cut(s) | 157 |
| BseGI | GGATG | 5 cut(s) | 50, 84, 136, 315, 574 |
| BseJI | GATNNNNATC | 1 cut(s) | 541 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 304, 330, 331, 460 |
| BseMI | GCAATG | 2 cut(s) | 471, 570 |
| BseMII | CTCAG | 3 cut(s) | 305, 306, 435 |
| BseNI | ACTGG | 1 cut(s) | 213 |
| BseXI | GCAGC | 1 cut(s) | 500 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BsiSI | CCGG | 1 cut(s) | 158 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 304, 330, 331, 460 |
| BsmAI | GTCTC | 1 cut(s) | 294 |
| BsnI | GGCC | 1 cut(s) | 323 |
| Bsp13I | TCCGGA | 1 cut(s) | 157 |
| Bsp143I | GATC | 3 cut(s) | 211, 418, 529 |
| BspACI | CCGC | 3 cut(s) | 42, 231, 298 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 3 cut(s) | 304, 307, 436 |
| BspEI | TCCGGA | 1 cut(s) | 157 |
| BspLI | GGNNCC | 1 cut(s) | 51 |
| BspOI | GCTAGC | 1 cut(s) | 42 |
| BspPI | GGATC | 2 cut(s) | 219, 413 |
| BsrDI | GCAATG | 2 cut(s) | 471, 570 |
| BsrI | ACTGG | 1 cut(s) | 213 |
| BssMI | GATC | 3 cut(s) | 211, 418, 529 |
| Bst4CI | ACNGT | 1 cut(s) | 166 |
| Bst6I | CTCTTC | 1 cut(s) | 461 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 310, 569 |
| BstC8I | GCNNGC | 3 cut(s) | 40, 302, 493 |
| BstDEI | CTNAG | 4 cut(s) | 243, 291, 315, 444 |
| BstF5I | GGATG | 5 cut(s) | 50, 84, 136, 315, 574 |
| BstKTI | GATC | 3 cut(s) | 214, 421, 532 |
| BstMAI | GTCTC | 1 cut(s) | 294 |
| BstMBI | GATC | 3 cut(s) | 211, 418, 529 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 310, 569 |
| BstNSI | RCATGY | 1 cut(s) | 495 |
| BstV1I | GCAGC | 1 cut(s) | 500 |
| BstX2I | RGATCY | 2 cut(s) | 418, 529 |
| BstYI | RGATCY | 2 cut(s) | 418, 529 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BtsCI | GGATG | 5 cut(s) | 50, 84, 136, 315, 574 |
| Cac8I | GCNNGC | 3 cut(s) | 40, 302, 493 |
| Cfr13I | GGNCC | 1 cut(s) | 322 |
| Csp6I | GTAC | 1 cut(s) | 34 |
| CviAII | CATG | 2 cut(s) | 83, 492 |
| CviJI | RGCY | 8 cut(s) | 99, 116, 136, 275, 323, 398, 453, 579 |
| CviKI_1 | RGCY | 8 cut(s) | 99, 116, 136, 275, 323, 398, 453, 579 |
| CviQI | GTAC | 1 cut(s) | 34 |
| DdeI | CTNAG | 4 cut(s) | 243, 291, 315, 444 |
| DpnI | GATC | 3 cut(s) | 213, 420, 531 |
| DpnII | GATC | 3 cut(s) | 211, 418, 529 |
| Eam1104I | CTCTTC | 1 cut(s) | 461 |
| EarI | CTCTTC | 1 cut(s) | 461 |
| Eco32I | GATATC | 1 cut(s) | 58 |
| EcoO109I | RGGNCCY | 1 cut(s) | 322 |
| EcoRV | GATATC | 1 cut(s) | 58 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| FaeI | CATG | 2 cut(s) | 86, 495 |
| FatI | CATG | 2 cut(s) | 82, 491 |
| Fnu4HI | GCNGC | 1 cut(s) | 489 |
| FokI | GGATG | 5 cut(s) | 57, 91, 143, 322, 581 |
| Fsp4HI | GCNGC | 1 cut(s) | 489 |
| FspBI | CTAG | 1 cut(s) | 39 |
| GluI | GCNGC | 1 cut(s) | 489 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| HapII | CCGG | 1 cut(s) | 158 |
| Hin1II | CATG | 2 cut(s) | 86, 495 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HinfI | GANTC | 3 cut(s) | 124, 346, 509 |
| HpaII | CCGG | 1 cut(s) | 158 |
| Hpy166II | GTNNAC | 1 cut(s) | 202 |
| Hpy188I | TCNGA | 1 cut(s) | 339 |
| Hpy188III | TCNNGA | 3 cut(s) | 128, 144, 158 |
| Hpy8I | GTNNAC | 1 cut(s) | 202 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 8 cut(s) | 82, 412, 425, 437, 476, 503, 542, 563 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 310, 569 |
| HpyF3I | CTNAG | 4 cut(s) | 243, 291, 315, 444 |
| Hsp92II | CATG | 2 cut(s) | 86, 495 |
| Kpn2I | TCCGGA | 1 cut(s) | 157 |
| Kzo9I | GATC | 3 cut(s) | 211, 418, 529 |
| LmnI | GCTCC | 1 cut(s) | 500 |
| Lsp1109I | GCAGC | 1 cut(s) | 500 |
| LweI | GCATC | 5 cut(s) | 69, 300, 485, 551, 559 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeIII | GTNAC | 2 cut(s) | 166, 268 |
| MalI | GATC | 3 cut(s) | 213, 420, 531 |
| MboI | GATC | 3 cut(s) | 211, 418, 529 |
| MboII | GAAGA | 4 cut(s) | 248, 428, 448, 530 |
| MflI | RGATCY | 2 cut(s) | 418, 529 |
| MluCI | AATT | 4 cut(s) | 17, 236, 372, 426 |
| MlyI | GAGTC | 1 cut(s) | 355 |
| MnlI | CCTC | 3 cut(s) | 140, 464, 479 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MroI | TCCGGA | 1 cut(s) | 157 |
| MseI | TTAA | 2 cut(s) | 227, 610 |
| MslI | CAYNNNNRTG | 1 cut(s) | 182 |
| MspI | CCGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 310, 569 |
| NdeII | GATC | 3 cut(s) | 211, 418, 529 |
| NheI | GCTAGC | 1 cut(s) | 38 |
| NlaIII | CATG | 2 cut(s) | 86, 495 |
| NlaIV | GGNNCC | 1 cut(s) | 51 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 1 cut(s) | 495 |
| PaeI | GCATGC | 1 cut(s) | 495 |
| PfeI | GAWTC | 2 cut(s) | 124, 509 |
| PkrI | GCNGC | 1 cut(s) | 490 |
| PleI | GAGTC | 1 cut(s) | 354 |
| PpsI | GAGTC | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 1 cut(s) | 322 |
| PsuI | RGATCY | 2 cut(s) | 418, 529 |
| RsaI | GTAC | 1 cut(s) | 35 |
| RsaNI | GTAC | 1 cut(s) | 34 |
| RseI | CAYNNNNRTG | 1 cut(s) | 182 |
| SaqAI | TTAA | 2 cut(s) | 227, 610 |
| SatI | GCNGC | 1 cut(s) | 489 |
| Sau3AI | GATC | 3 cut(s) | 211, 418, 529 |
| Sau96I | GGNCC | 1 cut(s) | 322 |
| SchI | GAGTC | 1 cut(s) | 355 |
| SetI | ASST | 7 cut(s) | 68, 118, 138, 151, 277, 380, 445 |
| SfaNI | GCATC | 5 cut(s) | 69, 300, 485, 551, 559 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 182 |
| SphI | GCATGC | 1 cut(s) | 495 |
| Sse9I | AATT | 4 cut(s) | 17, 236, 372, 426 |
| SsiI | CCGC | 3 cut(s) | 42, 231, 298 |
| SspI | AATATT | 1 cut(s) | 387 |
| SspMI | CTAG | 1 cut(s) | 39 |
| TaaI | ACNGT | 1 cut(s) | 166 |
| TaqI | TCGA | 2 cut(s) | 112, 143 |
| TasI | AATT | 4 cut(s) | 17, 236, 372, 426 |
| TfiI | GAWTC | 2 cut(s) | 124, 509 |
| Tru1I | TTAA | 2 cut(s) | 227, 610 |
| Tru9I | TTAA | 2 cut(s) | 227, 610 |
| TseI | GCWGC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 3 cut(s) | 30, 200, 384 |
| TspGWI | ACGGA | 1 cut(s) | 91 |
| XapI | RAATTY | 1 cut(s) | 17 |
| XceI | RCATGY | 1 cut(s) | 495 |
| XspI | CTAG | 1 cut(s) | 39 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |