RchiOBHm_Chr4g0407101

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004858
Physical Location & Seq
Forward (+)
29242362 .. 29243470
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37837

Sequence Viewer

Length: 1107 bp
ATGAAACTATTTTGTTGTAGAGAAACTGCATTTGGGTTCTTTAAGTTAGCCTTTAGGGATGATAATCAGCAGACTGTGGAGTCATGTTGTGTGGCTGCACATGTTTTGACGGCCGAAAATCTACGATTTCTGGCTCAAGATGTGGTTTCGTGTGTGATTGGGAGGATTGGGCCGAGTAGGAGTAGGGATTTGGTGGGGTTTATGTGGGGAGGGCATTGTGAATACGAGTCGGATTTTTCGGTTCTTGATACACTAATGAGGGGGTTCTTGAATGCGGAAATGGGCGCCGAGGCTTTAGAGGTTTTGAGGAGGATGAGGGAGGGGGGAGTGAGGCCGAGCTTGTCTGCGGTTGCGATTCTGTTCAGGTTGTTGATAAGGGTTGGTGTTTGTGGTAGTCTGTGGAAGGTGTTTAGGGATATGATTAGAGAATGGCCTTATCCATGTAATTATGTTTTTAGTGCAATGATTCTTGGGTTTTGTCGAAAAGGGTTGGTTAGAGTTGGGGAGAGTTTGTTACAGGTGATGTGGAAATTCCAATATGAACCAGATGTTTTTGCTTATAATATTGTGATCTATGCAAATTGTGCGGGAGGGCAGACAGTTGATACACTTGAATGGGTGGAGTTGATGATTGCGAGAGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCATTGTGTAAGGAAGAAAATGTGGTGGAGGCAAGGAAGTTTTTTGATGACGTCCCAGACATGGGTGTTTTTCCTAATACCATAATGTACAATACCATGATGGATGAGTATGTTAAGGCAAGGGAGATTGATCAGGCTAGCATGCTTTTTGAAGAAATGAGGAAGAAAAGCATTTCTCCAGATGGCATAACTTTCAATATCATGATTGGAGGGCATTACAAGTATGGAAGCGAAGATGATGGAGACAGGTTGTTGCGGGATTTATCTGTGTCAGGATTACTTCCAGATTCTTCGTTGTATGATATCTATGTTTCTGTGTTGTGTTGGGCAGATCGGTTGGACGATGCCATGGCAGTTTTAGAGGATATGCTTGAAAGAATCGCCTCTAAGTGTGGTCGCTTTCAACTCTGTTATTGCAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

368

Amino Acids

41.76

Weight (kDa)

5.04

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 147 - 195 8.2e-06 PPR repeat family
PPR_2 PF13041 182 - 231 1.2e-10 PPR repeat family
PPR_1 PF12854 213 - 244 2.1e-10 PPR repeat
PPR_2 PF13041 217 - 254 1.6e-08 PPR repeat family
PPR_3 PF13812 242 - 297 2.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 248 - 281 1.1e-06 PPR repeat
PPR_2 PF13041 252 - 300 3e-16 PPR repeat family
PPR PF01535 255 - 284 3.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AasI GACNNNNNNGTC 1 cut(s) 79
AatII GACGTC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 284
AciI CCGC 4 cut(s) 275, 347, 587, 937
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 530
AcyI GRCGYC 2 cut(s) 285, 732
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 2 cut(s) 742, 743
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 6 cut(s) 271, 614, 833, 877, 1055, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 339, 1101
AluI AGCT 2 cut(s) 339, 1101
Alw26I GTCTC 1 cut(s) 918
AoxI GGCC 4 cut(s) 111, 170, 332, 431
ApeKI GCWGC 2 cut(s) 95, 1098
ApoI RAATTY 1 cut(s) 530
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 532
AsuNHI GCTAGC 1 cut(s) 818
BanI GGYRCC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 775, 857, 914
BceAI ACGGC 1 cut(s) 126
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 918
BfaI CTAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 2 cut(s) 96, 1099
BlsI GCNGC 2 cut(s) 97, 1100
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 1015
BmtI GCTAGC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 285, 732
BsaJI CCNNGG 2 cut(s) 288, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 742, 743
Bse3DI GCAATG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 288, 1029
BseGI GGATG 4 cut(s) 64, 318, 647, 790
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 742, 743
BseMI GCAATG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 322
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 113, 172, 334, 433
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 742, 743
BsmAI GTCTC 1 cut(s) 918
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 4 cut(s) 113, 172, 334, 433
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 3 cut(s) 570, 811, 1012
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 4 cut(s) 275, 347, 587, 937
BspANI GGCC 4 cut(s) 113, 172, 334, 433
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 768
BssECI CCNNGG 2 cut(s) 288, 1029
BssMI GATC 3 cut(s) 570, 811, 1012
BssNI GRCGYC 2 cut(s) 285, 732
BssT1I CCWWGG 1 cut(s) 1029
Bst4CI ACNGT 3 cut(s) 76, 601, 673
BstACI GRCGYC 2 cut(s) 285, 732
BstAPI GCANNNNNTGC 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 820, 824
BstDEI CTNAG 1 cut(s) 1068
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 4 cut(s) 64, 318, 647, 790
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 573, 814, 1015
BstMAI GTCTC 1 cut(s) 918
BstMBI GATC 3 cut(s) 570, 811, 1012
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNSI RCATGY 2 cut(s) 104, 826
BstV1I GCAGC 1 cut(s) 82
BstZI CGGCCG 1 cut(s) 111
BsuRI GGCC 4 cut(s) 113, 172, 334, 433
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 4 cut(s) 64, 318, 647, 790
Cac8I GCNNGC 2 cut(s) 820, 824
CciI TCATGA 1 cut(s) 882
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 769
CviAII CATG 8 cut(s) 84, 101, 441, 742, 778, 823, 883, 1030
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 1 cut(s) 1068
DinI GGCGCC 1 cut(s) 286
DpnI GATC 3 cut(s) 572, 813, 1014
DpnII GATC 3 cut(s) 570, 811, 1012
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
EclXI CGGCCG 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 1029
Eco32I GATATC 1 cut(s) 985
Eco52I CGGCCG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 1 cut(s) 1029
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 8 cut(s) 87, 104, 444, 745, 781, 826, 886, 1033
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 719
FatI CATG 8 cut(s) 83, 100, 440, 741, 777, 822, 882, 1029
FauI CCCGC 2 cut(s) 580, 930
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 2 cut(s) 96, 1099
FokI GGATG 4 cut(s) 71, 325, 654, 797
Fsp4HI GCNGC 2 cut(s) 96, 1099
FspBI CTAG 1 cut(s) 819
GlaI GCGC 1 cut(s) 286
GluI GCNGC 2 cut(s) 96, 1099
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 4 cut(s) 113, 172, 334, 433
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 2 cut(s) 285, 732
Hin1II CATG 8 cut(s) 87, 104, 444, 745, 781, 826, 886, 1033
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 6 cut(s) 80, 227, 355, 466, 968, 1059
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 647
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 7 cut(s) 137, 245, 268, 860, 883, 954, 965
Hpy8I GTNNAC 1 cut(s) 647
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 76, 601, 673
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 6 cut(s) 29, 98, 461, 578, 683, 1098
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 1 cut(s) 1068
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 2 cut(s) 285, 732
Hsp92II CATG 8 cut(s) 87, 104, 444, 745, 781, 826, 886, 1033
HspAI GCGC 1 cut(s) 285
KasI GGCGCC 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 3 cut(s) 570, 811, 1012
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 1015
MaeI CTAG 1 cut(s) 819
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 2 cut(s) 513, 658
MalI GATC 3 cut(s) 572, 813, 1014
MboI GATC 3 cut(s) 570, 811, 1012
MboII GAAGA 5 cut(s) 707, 845, 856, 926, 963
MluCI AATT 3 cut(s) 445, 530, 580
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 2 cut(s) 89, 236
MmeI TCCRAC 2 cut(s) 210, 999
MseI TTAA 3 cut(s) 42, 666, 795
MslI CAYNNNNRTG 1 cut(s) 613
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 584
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 3 cut(s) 570, 811, 1012
NheI GCTAGC 1 cut(s) 818
NlaIII CATG 8 cut(s) 87, 104, 444, 745, 781, 826, 886, 1033
NlaIV GGNNCC 1 cut(s) 286
NmeAIII GCCGAG 3 cut(s) 198, 313, 360
NspI RCATGY 2 cut(s) 104, 826
PaeI GCATGC 1 cut(s) 826
PagI TCATGA 1 cut(s) 882
PciI ACATGT 1 cut(s) 100
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 4 cut(s) 355, 466, 968, 1059
PkrI GCNGC 2 cut(s) 97, 1100
PleI GAGTC 2 cut(s) 88, 235
PluTI GGCGCC 1 cut(s) 288
PpsI GAGTC 2 cut(s) 88, 235
PscI ACATGT 1 cut(s) 100
PsiI TTATAA 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 1 cut(s) 613
SaqAI TTAA 3 cut(s) 42, 666, 795
SatI GCNGC 2 cut(s) 96, 1099
Sau3AI GATC 3 cut(s) 570, 811, 1012
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 89, 236
SetI ASST 8 cut(s) 303, 341, 368, 408, 522, 735, 932, 1103
SfaNI GCATC 1 cut(s) 1015
SfoI GGCGCC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SphI GCATGC 1 cut(s) 826
Sse9I AATT 3 cut(s) 445, 530, 580
SsiI CCGC 4 cut(s) 275, 347, 587, 937
SspDI GGCGCC 1 cut(s) 284
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 3 cut(s) 76, 601, 673
TaiI ACGT 1 cut(s) 735
TaqI TCGA 1 cut(s) 481
TasI AATT 3 cut(s) 445, 530, 580
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 4 cut(s) 355, 466, 968, 1059
Tru1I TTAA 3 cut(s) 42, 666, 795
Tru9I TTAA 3 cut(s) 42, 666, 795
TseI GCWGC 2 cut(s) 95, 1098
TspDTI ATGAA 2 cut(s) 17, 555
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 104, 826
XspI CTAG 1 cut(s) 819
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.