RLG00000002673

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004858
Physical Location & Seq
Reverse (-)
37899157 .. 37903135
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002673

Sequence Viewer

Length: 1122 bp
ATGGGCGCTGAGGCTTTGGAGGTTTTGAGGAGGATGAGGGAGGTGGGAGTGAGGCCCAGTTTGTCTGCGGTTGCGATTTTGTTCGGGTTGTTGATAAGGGTTGGCGATTATGGTAGTGTGTGGAAGGTGATGTGGAAATTCCAATGTGAACCGGATGTTTTTGCTTATAACATTGTGATCTATGCAAATTGTGCGAGAGGGCAGACAGCTGATGCGCTGGAATGGGTGGAGTTGATGATTGCGAGGGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCATTGTGTAAGGAAGGAAATGTGGTGGAGGCAAGGAAGATTTTTGATGATGTCCCAGACATGGGTGTTTATCCTAATACCATAATGTACAATACCATGATGGATGGGTATGTTAAGGCAAGGGAGATTGATCAGGCTAACATGCTTTTTGAAGAAATGAGAAACAAGAGCATTTCTCCAGATGGCATAACTTTCAATATCTTGATTGGAGGGCATTACAAGTATGGAAGCGAAGATGATGGAGACAGTAGCCGAAAGATAAATCGAGCTGTGATGATTCTGGATGAGCTTGTATCTAGAGGTGTTGTTCCAGACACAGTAACATACAACACTATGATGAATGGTGTTTGTGTTGACATACTGGATCGTGCTATGATTTTAACCGCTAAATTGCTTAAGTTGGCGTTTCTTCCAAATGTTGTTACAGCTAATGTATTGTTGTCTCAGTTCCGCAGGCAGGGGATGCCTGAGAAGGCCCTAATGTGGGGTCAGAAGTTGAGTCAGTTTTCCTTTTGTTTTGATGAAATTACCTACAAAATATTGGACAGAGCCTATCATAATATGCAAGAAGATCCTGCAATTCCAAGTGCAACACCTGAGAAAAGCCTCTTCTTGGATTTCCTCATGTACATGACAAGGTCAGGTGATGAATGTTTGTTGTTGTCCAAGCCAACTGAAAAGGTCTGTTTTGATGAGAATAGGAGGCTTCTAGCATGCTCCCCTGCAAAAGATTCTGGGGAACAAGTGAAAGATCTGCGATTTGCATCTACTTGTTCCCCTGTTGCAATGGATGCCGATGGCTCACCTGTTTTGTTTTTTTGGAGTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

374

Amino Acids

41.86

Weight (kDa)

5.1

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 50 - 98 1.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 51 - 100 4.4e-13 PPR repeat family
PPR_1 PF12854 82 - 113 1.4e-11 PPR repeat
PPR_2 PF13041 86 - 123 3.4e-09 PPR repeat family
PPR PF01535 89 - 119 6.1e-07 PPR repeat
PPR_3 PF13812 109 - 166 9.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 117 - 150 3.3e-07 PPR repeat
PPR_2 PF13041 121 - 169 1.7e-16 PPR repeat family
PPR PF01535 124 - 153 2.9e-07 PPR repeat
PPR_2 PF13041 181 - 213 9.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AciI CCGC 3 cut(s) 68, 672, 739
AclWI GGATC 2 cut(s) 660, 854
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 2 cut(s) 377, 917
AfiI CCNNNNNNNGG 6 cut(s) 349, 350, 745, 771, 772, 901
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 2 cut(s) 440, 484
AluBI AGCT 4 cut(s) 209, 557, 577, 716
AluI AGCT 4 cut(s) 209, 557, 577, 716
Alw26I GTCTC 2 cut(s) 525, 735
AlwI GGATC 2 cut(s) 660, 854
AoxI GGCC 2 cut(s) 53, 762
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 2 cut(s) 8, 217
AspS9I GGNCC 2 cut(s) 54, 763
AsuHPI GGTGA 3 cut(s) 139, 944, 1083
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 5 cut(s) 382, 386, 464, 521, 1079
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 525, 735
BfaI CTAG 2 cut(s) 585, 998
BfoI RGCGCY 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 683
BglII AGATCT 1 cut(s) 1039
BmgT120I GGNCC 2 cut(s) 54, 763
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 4 cut(s) 202, 741, 1061, 1069
BmuI ACTGGG 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 1051
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 6 cut(s) 349, 350, 745, 771, 772, 901
Bse1I ACTGG 2 cut(s) 57, 654
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 1051
BseGI GGATG 7 cut(s) 39, 160, 254, 397, 577, 756, 1084
BseJI GATNNNNATC 1 cut(s) 1051
BseLI CCNNNNNNNGG 6 cut(s) 349, 350, 745, 771, 772, 901
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 746, 747, 876
BseNI ACTGG 2 cut(s) 57, 654
BseRI GAGGAG 1 cut(s) 43
BshFI GGCC 2 cut(s) 55, 764
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 6 cut(s) 349, 350, 745, 771, 772, 901
BsmAI GTCTC 2 cut(s) 525, 735
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 55, 764
Bsp1407I TGTACA 2 cut(s) 375, 915
Bsp143I GATC 5 cut(s) 177, 418, 652, 859, 1039
BspACI CCGC 3 cut(s) 68, 672, 739
BspANI GGCC 2 cut(s) 55, 764
BspCNI CTCAG 3 cut(s) 745, 748, 877
BspPI GGATC 2 cut(s) 660, 854
BspTI CTTAAG 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 1080
BsrGI TGTACA 2 cut(s) 375, 915
BsrI ACTGG 2 cut(s) 57, 654
BssMI GATC 5 cut(s) 177, 418, 652, 859, 1039
Bst4CI ACNGT 3 cut(s) 280, 536, 607
Bst6I CTCTTC 1 cut(s) 902
BstAFI CTTAAG 1 cut(s) 683
BstAPI GCANNNNNTGC 3 cut(s) 191, 751, 1079
BstAUI TGTACA 2 cut(s) 375, 915
BstC8I GCNNGC 2 cut(s) 743, 1003
BstDEI CTNAG 4 cut(s) 9, 732, 756, 885
BstF5I GGATG 7 cut(s) 39, 160, 254, 397, 577, 756, 1084
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 217
BstKTI GATC 5 cut(s) 180, 421, 655, 862, 1042
BstMAI GTCTC 2 cut(s) 525, 735
BstMBI GATC 5 cut(s) 177, 418, 652, 859, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 191, 751, 1079
BstNSI RCATGY 2 cut(s) 433, 1005
BstX2I RGATCY 2 cut(s) 859, 1039
BstYI RGATCY 2 cut(s) 859, 1039
BsuRI GGCC 2 cut(s) 55, 764
BtsCI GGATG 7 cut(s) 39, 160, 254, 397, 577, 756, 1084
Cac8I GCNNGC 2 cut(s) 743, 1003
CfoI GCGC 2 cut(s) 8, 217
Cfr13I GGNCC 2 cut(s) 54, 763
Csp6I GTAC 2 cut(s) 376, 916
CviAII CATG 6 cut(s) 349, 385, 430, 913, 919, 1002
CviQI GTAC 2 cut(s) 376, 916
DdeI CTNAG 4 cut(s) 9, 732, 756, 885
DpnI GATC 5 cut(s) 179, 420, 654, 861, 1041
DpnII GATC 5 cut(s) 177, 418, 652, 859, 1039
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
EcoO109I RGGNCCY 1 cut(s) 763
FaeI CATG 6 cut(s) 352, 388, 433, 916, 922, 1005
FaqI GGGAC 1 cut(s) 326
FatI CATG 6 cut(s) 348, 384, 429, 912, 918, 1001
FbaI TGATCA 1 cut(s) 418
FokI GGATG 7 cut(s) 46, 167, 261, 404, 584, 763, 1091
FspBI CTAG 2 cut(s) 585, 998
GlaI GCGC 2 cut(s) 7, 216
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 55, 764
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 8, 217
Hin1II CATG 6 cut(s) 352, 388, 433, 916, 922, 1005
Hin6I GCGC 2 cut(s) 6, 215
HinP1I GCGC 2 cut(s) 6, 215
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 3 cut(s) 565, 787, 1019
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 139, 944, 1083
Hpy166II GTNNAC 3 cut(s) 149, 254, 643
Hpy188I TCNGA 1 cut(s) 780
Hpy188III TCNNGA 5 cut(s) 467, 490, 569, 585, 599
Hpy8I GTNNAC 3 cut(s) 149, 254, 643
HpyAV CCTTC 3 cut(s) 118, 296, 754
HpyCH4III ACNGT 3 cut(s) 280, 536, 607
HpyCH4V TGCA 8 cut(s) 185, 290, 853, 866, 878, 1013, 1052, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 751, 1079
HpyF3I CTNAG 4 cut(s) 9, 732, 756, 885
Hsp92II CATG 6 cut(s) 352, 388, 433, 916, 922, 1005
HspAI GCGC 2 cut(s) 6, 215
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 177, 418, 652, 859, 1039
LmnI GCTCC 1 cut(s) 1010
LweI GCATC 4 cut(s) 202, 741, 1061, 1069
MaeI CTAG 2 cut(s) 585, 998
MaeIII GTNAC 3 cut(s) 265, 607, 709
MalI GATC 5 cut(s) 179, 420, 654, 861, 1041
MboI GATC 5 cut(s) 177, 418, 652, 859, 1039
MboII GAAGA 6 cut(s) 337, 452, 533, 689, 869, 889
MflI RGATCY 2 cut(s) 859, 1039
MluCI AATT 5 cut(s) 137, 187, 677, 813, 867
MlyI GAGTC 1 cut(s) 796
MseI TTAA 5 cut(s) 273, 402, 668, 684, 1120
MslI CAYNNNNRTG 2 cut(s) 623, 917
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 191, 751, 1079
NdeII GATC 5 cut(s) 177, 418, 652, 859, 1039
NlaIII CATG 6 cut(s) 352, 388, 433, 916, 922, 1005
NspI RCATGY 2 cut(s) 433, 1005
PaeI GCATGC 1 cut(s) 1005
PfeI GAWTC 2 cut(s) 565, 1019
PflFI GACNNNGTC 1 cut(s) 925
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
PsiI TTATAA 1 cut(s) 168
PspPI GGNCC 2 cut(s) 54, 763
PsuI RGATCY 2 cut(s) 859, 1039
PsyI GACNNNGTC 1 cut(s) 925
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 377, 917
RsaNI GTAC 2 cut(s) 376, 916
RseI CAYNNNNRTG 2 cut(s) 623, 917
SaqAI TTAA 5 cut(s) 273, 402, 668, 684, 1120
Sau3AI GATC 5 cut(s) 177, 418, 652, 859, 1039
Sau96I GGNCC 2 cut(s) 54, 763
SchI GAGTC 1 cut(s) 796
SfaNI GCATC 4 cut(s) 202, 741, 1061, 1069
SmiMI CAYNNNNRTG 2 cut(s) 623, 917
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SphI GCATGC 1 cut(s) 1005
Sse9I AATT 5 cut(s) 137, 187, 677, 813, 867
SsiI CCGC 3 cut(s) 68, 672, 739
SspI AATATT 1 cut(s) 828
SspMI CTAG 2 cut(s) 585, 998
TaaI ACNGT 3 cut(s) 280, 536, 607
TaqI TCGA 1 cut(s) 553
TasI AATT 5 cut(s) 137, 187, 677, 813, 867
TatI WGTACW 2 cut(s) 375, 915
TfiI GAWTC 2 cut(s) 565, 1019
Tru1I TTAA 5 cut(s) 273, 402, 668, 684, 1120
Tru9I TTAA 5 cut(s) 273, 402, 668, 684, 1120
TspDTI ATGAA 3 cut(s) 641, 825, 951
Tth111I GACNNNGTC 1 cut(s) 925
Vha464I CTTAAG 1 cut(s) 683
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 584
XceI RCATGY 2 cut(s) 433, 1005
XspI CTAG 2 cut(s) 585, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.