Rw7G024670

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004858
Physical Location & Seq
Forward (+)
30564756 .. 30567326
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024670.1

Sequence Viewer

Length: 2571 bp
ATGTCCGGTGAGGCGCGTCGCCTTCACCCTTCTCTCAAGGTACACTATTATCACACTCTCAACTCCTCCCGACCCACCTCTGATTTTCACAGCACCTTTGAATATCTCGCTCAGTTCTTGCCATTCTCTTCTATCAAACCCAATTCCCAATGCTCTATAAACTCCAATGAGCGGCGTAGAGTCACTGTTGGGTTATCCAGGATCATAAAGAACCAACAGGGCTATGTACTGAAGGGCTTTTCCAGAACCTTCTGCCCATTTTTTCTTGTAAAGATTATGAAACTGTTCTGTTGTAGAGAAACTGCATTTGGGTTCTTTAAACTAGCCTTTAGGGATGATAATCAGCAGACTGTGGAATCATGTTGTGTGGCTGCACATGTTTTGGCGGCCGAAAATCTACGGTTTCTGGCTCAAGATGTGGTTTCGTGTGTGATTGGGAGGATTGGCCCCAGTAGGAGTAGGGATTTGGTGGGGTTTATGTGGGGAGGGCATTGTGAATACGAGTCGGATTTTTCGGTTCTTGATACACTAATGAGGGGGTTCTTGAATGCGGAAATGGGCGCCGAGGCTTTGGAGGTTTTGAGGAGGATGAGGGAGGTGGGAGTGAGGCCGAGTTTGTCAGCGGTTGCGATTCTGTTCAGGTTGTTGATAAGGGTTGGTGATTATGGTAGTGTGTGGAAGGTGTTTAGGGATATGATTAGAGAAGGGCCTCATCCATGTAATTATGTTTTTAGTGCAATGATTCTTGGGTTTTGTCAAAAAGGGTTGGTTAGAGTTGGGGAGAGTTTGTTACAGGTGATGTGGAAATTCCAATGTGAACCGGATGTTTTTGCTTATAACATTGTGATCTATGCAAATTGTGCGAGAGGGCAGACAGCTGATGCGCTTGAATGGGTGGAGTTGATGATTGCGAGGGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCACTGTGTAAGGAAGGAAATGTGGTGGAGGCAAGGAAGCTTTTTGATGATGTCCCAGACATGGGTGTTTATCCGAATACCATAATTTACAATACCATGATGGATGGGTATGTTAAGGCAAGGGAGATTGGTCAGGCTAACACGCTTTTTGAAGAAATGAGAAACAAGAGCATTTCTCCAGATGGCATAACTTTCAATATCTTGATTGGAGGGCATTACAAGTATGGAAGTGAAGATGATGGAGACAGGTTGTTGCGGGATTTATCTGTGTCAGGATTACTTCCAGATTCTTCATTGTATGATATCTATGTTTCTGTGTTGTGTTGGGCAGATCGGTTGGACGATGCCATGGCAGTTTTAGAGGATATGCTTGAAAGAGGATTGCCTCTAAGTGTGGTCGCTTTCAACTCTGTCATTGCAGCTTGTAGCAGAGTAGGGTTGGAAGAAAAAACATATAAGGCCTTTAACTTCATGATTTCATTTGGTATAACTCCTTCATCTTCTACGTGTAGTTCTTTGCTTATGGGTTTATCTAAGAACGGTTACTTGCAAGAAGCCAGAGAGCTTTTGTGTAAAATGATAGAGAAGGGGTTTCCTATCAGAAAAGCTGCTTTTACGGTGCTTTTGGATGGGTACTTTAGGATGGGTGATTTAGATGGGGCACAAAGTTTGTGGAATGAGATGGAAGGAAGAGGCATATCTCCTGATGTTGTTGCCTTTTCAGCATTTATCAATGGACTATCTAAAGCCGGTTTAATGGAAGAAGCATATGATATGTTTCAAGAAATGTCAAGAAGAGGTTTTGTGCCCAATAATTTTGTCTATAATTCTTTGATTGGTGGGTTTTGCTACTGTGGTAAGTTGAGTGATGCACTGGGGTTGGAGAGAGAGATGAGGCAAAGGGGTCTTGTTCCGGATATTTTTACCACCAATATGATCATTCATGGGTTCTGTAGACAGGGGAGGATGAAGTCAGCAATTAATACATTTATGAACATGTTCCAAACTGGGTTAACCCCAGATATCGTCACTTACAATACATTAATTGGTGGTTATTGTAAAGTATTTGACATGGTTAGGGCAGATGAATTTTTGTATAAAATGTACGCTAGCGGATGGGAACCAGATATCACAACCTATAATATACGGATGCATGGTTTCTGTAGTAGCCGAAAGATAAATCGAGCTGTGATGATTCTGGATGAGCTTGTATCGAGAGGTGTTGTTCCGGACACAGTAACATACAACACTATGATGAATGGTGTTTGTGTTGACATACTGGATCGTGCTATGATTTTAACCGCTAAATTGCTTAAGTTGGCGTTTCTTCCAAATGTTGTTACAGCTAATGTATTGTTGTCTCAGTTCCGCAGGCAGGGGATGCCTGAGAAGGCCCTAATGTGGGGTCAGAAGTTGAGTCAGTTTTCCTTTTGTTTTGATGAAATTACCTACAAAATATTGGACAGAGCCTATCAAAATATGCAAGAAGATCCTGCAATTCCAAGTGCAACACCTGAGAAAAGCCTCTTCTTGGATTTCCTCATGTACATTACGTATGATTATTTATGTAAAAATAAACCTTGCAGAGGTGTAAGACAAACCCTCTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

856

Amino Acids

96.71

Weight (kDa)

7.85

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 239 - 287 4.5e-06 PPR repeat family
PPR_3 PF13812 264 - 321 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 274 - 323 1.3e-12 PPR repeat family
PPR_1 PF12854 305 - 336 7.7e-12 PPR repeat
PPR_2 PF13041 309 - 346 2.9e-09 PPR repeat family
PPR PF01535 312 - 342 8.4e-07 PPR repeat
PPR_3 PF13812 332 - 389 1.3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 344 - 392 4.5e-15 PPR repeat family
PPR_long PF17177 433 - 561 2e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 435 - 546 4.8e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 450 - 498 2.1e-06 PPR repeat family
PPR PF01535 488 - 517 2.7e-06 PPR repeat
PPR_2 PF13041 523 - 568 1.9e-11 PPR repeat family
PPR_1 PF12854 550 - 583 6.5e-09 PPR repeat
PPR_2 PF13041 554 - 602 4.6e-15 PPR repeat family
PPR PF01535 557 - 587 2.4e-07 PPR repeat
PPR_3 PF13812 578 - 633 2.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 585 - 618 2.6e-08 PPR repeat
PPR_2 PF13041 591 - 638 1.2e-12 PPR repeat family
PPR PF01535 593 - 622 9.9e-06 PPR repeat
PPR_3 PF13812 615 - 671 2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 620 - 649 1.7e-07 PPR repeat
PPR_2 PF13041 624 - 673 3.2e-16 PPR repeat family
PPR_1 PF12854 656 - 674 5.5e-07 PPR repeat
PPR_2 PF13041 659 - 707 1.4e-13 PPR repeat family
PPR_2 PF13041 694 - 742 2.5e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 1912
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 2 cut(s) 1870, 2185
AciI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
AclWI GGATC 3 cut(s) 209, 2247, 2441
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 806, 2045
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 5 cut(s) 42, 228, 1592, 2063, 2504
AfiI CCNNNNNNNGG 8 cut(s) 171, 1018, 1019, 2332, 2358, 2359, 2488, 2543
AflII CTTAAG 1 cut(s) 2270
AflIII ACRYGT 3 cut(s) 376, 1463, 1953
AgsI TTSAA 8 cut(s) 101, 547, 890, 1109, 1153, 1331, 1363, 1739
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 8 cut(s) 878, 997, 1379, 1522, 1565, 2144, 2164, 2303
AluI AGCT 8 cut(s) 878, 997, 1379, 1522, 1565, 2144, 2164, 2303
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 2 cut(s) 1194, 2322
Alw44I GTGCAC 1 cut(s) 957
AlwI GGATC 3 cut(s) 209, 2247, 2441
Aor13HI TCCGGA 2 cut(s) 1870, 2185
AoxI GGCC 6 cut(s) 387, 445, 608, 707, 1416, 2349
ApaLI GTGCAC 1 cut(s) 957
ApeKI GCWGC 3 cut(s) 371, 1376, 1565
ApoI RAATTY 2 cut(s) 806, 2045
AseI ATTAAT 2 cut(s) 1938, 2000
Asp700I GAANNNNTTC 2 cut(s) 284, 1955
AspLEI GCGC 3 cut(s) 16, 563, 886
AspS9I GGNCC 3 cut(s) 446, 707, 2350
AsuHPI GGTGA 5 cut(s) 17, 20, 671, 808, 1616
AsuNHI GCTAGC 1 cut(s) 2066
BaeGI GKGCMC 3 cut(s) 961, 1621, 1767
BanI GGYRCC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 1435, 1467
Bbv12I GWGCWC 1 cut(s) 961
BbvI GCAGC 3 cut(s) 358, 1388, 1552
BccI CCATC 9 cut(s) 1051, 1055, 1133, 1190, 1580, 1594, 1607, 1633, 2067
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 1893
BcoDI GTCTC 2 cut(s) 1194, 2322
BfaI CTAG 2 cut(s) 323, 2067
BfmI CTRYAG 2 cut(s) 1909, 2119
BfoI RGCGCY 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 2270
BisI GCNGC 5 cut(s) 173, 372, 387, 1377, 1566
BlsI GCNGC 5 cut(s) 174, 373, 388, 1378, 1567
Bme1390I CCNGG 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 446, 707, 2350
BmiI GGNNCC 3 cut(s) 448, 562, 2079
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 3 cut(s) 444, 1841, 1974
BmsI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
BmtI GCTAGC 1 cut(s) 2070
BmuI ACTGGG 3 cut(s) 444, 1841, 1974
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 1119
BpuEI CTTGAG 2 cut(s) 20, 396
BsaAI YACGTR 2 cut(s) 1464, 2511
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 564, 1305
BsaWI WCCGGW 4 cut(s) 5, 820, 1870, 2185
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 8 cut(s) 171, 1018, 1019, 2332, 2358, 2359, 2488, 2543
Bse118I RCCGGY 1 cut(s) 1706
Bse1I ACTGG 4 cut(s) 450, 1836, 1969, 2241
Bse3DI GCAATG 2 cut(s) 744, 1371
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 2 cut(s) 1870, 2185
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 564, 1305
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 8 cut(s) 171, 1018, 1019, 2332, 2358, 2359, 2488, 2543
BseMI GCAATG 2 cut(s) 744, 1371
BseMII CTCAG 4 cut(s) 125, 2333, 2334, 2463
BseNI ACTGG 4 cut(s) 450, 1836, 1969, 2241
BseRI GAGGAG 2 cut(s) 55, 598
BseSI GKGCMC 3 cut(s) 961, 1621, 1767
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 358, 1388, 1552
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 6 cut(s) 389, 447, 610, 709, 1418, 2351
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 961
BsiSI CCGG 5 cut(s) 6, 821, 1707, 1871, 2186
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 8 cut(s) 171, 1018, 1019, 2332, 2358, 2359, 2488, 2543
BsmAI GTCTC 2 cut(s) 1194, 2322
BsmFI GGGAC 1 cut(s) 995
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 6 cut(s) 389, 447, 610, 709, 1418, 2351
Bsp1286I GDGCHC 3 cut(s) 961, 1621, 1767
Bsp13I TCCGGA 2 cut(s) 1870, 2185
Bsp1407I TGTACA 1 cut(s) 2502
Bsp143I GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Bsp19I CCATGG 1 cut(s) 1305
BspACI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
BspANI GGCC 6 cut(s) 389, 447, 610, 709, 1418, 2351
BspCNI CTCAG 4 cut(s) 124, 2332, 2335, 2464
BspEI TCCGGA 2 cut(s) 1870, 2185
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 1428
BspLI GGNNCC 3 cut(s) 448, 562, 2079
BspOI GCTAGC 1 cut(s) 2070
BspPI GGATC 3 cut(s) 209, 2247, 2441
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 2270
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 744, 1371
BsrFI RCCGGY 1 cut(s) 1706
BsrGI TGTACA 1 cut(s) 2502
BsrI ACTGG 4 cut(s) 450, 1836, 1969, 2241
BssAI RCCGGY 1 cut(s) 1706
BssECI CCNNGG 2 cut(s) 564, 1305
BssMI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 4 cut(s) 133, 1642, 1747, 2489
BstACI GRCGYC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 2270
BstAPI GCANNNNNTGC 2 cut(s) 860, 2338
BstAUI TGTACA 1 cut(s) 2502
BstBAI YACGTR 2 cut(s) 1464, 2511
BstC8I GCNNGC 2 cut(s) 2068, 2330
BstDEI CTNAG 6 cut(s) 111, 1346, 1491, 2319, 2343, 2472
BstDSI CCRYGG 1 cut(s) 1305
BstENI CCTNNNNNAGG 1 cut(s) 2541
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 3 cut(s) 16, 563, 886
BstKTI GATC 6 cut(s) 204, 849, 1291, 1896, 2242, 2449
BstMAI GTCTC 2 cut(s) 1194, 2322
BstMBI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 380, 1957
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 2 cut(s) 1909, 2119
BstSLI GKGCMC 3 cut(s) 961, 1621, 1767
BstSNI TACGTA 1 cut(s) 2511
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 358, 1388, 1552
BstX2I RGATCY 1 cut(s) 2446
BstYI RGATCY 1 cut(s) 2446
BstZI CGGCCG 1 cut(s) 387
BsuRI GGCC 6 cut(s) 389, 447, 610, 709, 1418, 2351
BtgI CCRYGG 1 cut(s) 1305
BtsIMutI CAGTG 3 cut(s) 183, 959, 1829
Cac8I GCNNGC 2 cut(s) 2068, 2330
CciI TCATGA 1 cut(s) 1428
CfoI GCGC 3 cut(s) 16, 563, 886
Cfr10I RCCGGY 1 cut(s) 1706
Cfr13I GGNCC 3 cut(s) 446, 707, 2350
CseI GACGC 1 cut(s) 5
Csp6I GTAC 5 cut(s) 41, 227, 1591, 2062, 2503
CspCI CAANNNNNGTGG 2 cut(s) 1610, 1645
CviQI GTAC 5 cut(s) 41, 227, 1591, 2062, 2503
DdeI CTNAG 6 cut(s) 111, 1346, 1491, 2319, 2343, 2472
DinI GGCGCC 1 cut(s) 562
DpnI GATC 6 cut(s) 203, 848, 1290, 1895, 2241, 2448
DpnII GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
DraI TTTAAA 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 387
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 4 cut(s) 133, 1642, 1747, 2489
EarI CTCTTC 4 cut(s) 133, 1642, 1747, 2489
EclXI CGGCCG 1 cut(s) 387
Eco105I TACGTA 1 cut(s) 2511
Eco130I CCWWGG 1 cut(s) 1305
Eco147I AGGCCT 1 cut(s) 1418
Eco32I GATATC 3 cut(s) 1261, 1981, 2086
Eco52I CGGCCG 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 2541
EcoO109I RGGNCCY 2 cut(s) 707, 2350
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 3 cut(s) 1261, 1981, 2086
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 2112
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 1305
FaqI GGGAC 1 cut(s) 995
FauI CCCGC 1 cut(s) 1206
FauNDI CATATG 1 cut(s) 1726
FbaI TGATCA 1 cut(s) 1893
FblI GTMKAC 1 cut(s) 1912
Fnu4HI GCNGC 5 cut(s) 173, 372, 387, 1377, 1566
Fsp4HI GCNGC 5 cut(s) 173, 372, 387, 1377, 1566
FspBI CTAG 2 cut(s) 323, 2067
GlaI GCGC 3 cut(s) 15, 562, 885
GluI GCNGC 5 cut(s) 173, 372, 387, 1377, 1566
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 6 cut(s) 389, 447, 610, 709, 1418, 2351
HapII CCGG 5 cut(s) 6, 821, 1707, 1871, 2186
HgaI GACGC 1 cut(s) 5
HhaI GCGC 3 cut(s) 16, 563, 886
Hin1I GRCGYC 1 cut(s) 561
Hin6I GCGC 3 cut(s) 14, 561, 884
HinP1I GCGC 3 cut(s) 14, 561, 884
HincII GTYRAC 2 cut(s) 1971, 2230
HindII GTYRAC 2 cut(s) 1971, 2230
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 8 cut(s) 180, 356, 503, 631, 742, 1244, 2152, 2374
HpaI GTTAAC 1 cut(s) 1971
HpaII CCGG 5 cut(s) 6, 821, 1707, 1871, 2186
HphI GGTGA 5 cut(s) 17, 20, 671, 808, 1616
Hpy166II GTNNAC 7 cut(s) 43, 818, 923, 959, 1913, 1971, 2230
Hpy188I TCNGA 5 cut(s) 82, 508, 1032, 1559, 2367
Hpy8I GTNNAC 7 cut(s) 43, 818, 923, 959, 1913, 1971, 2230
Hpy99I CGWCG 1 cut(s) 21
HpyCH4IV ACGT 2 cut(s) 1463, 2510
HpyF10VI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
HpyF3I CTNAG 6 cut(s) 111, 1346, 1491, 2319, 2343, 2472
HpySE526I ACGT 2 cut(s) 1463, 2510
Hsp92I GRCGYC 1 cut(s) 561
HspAI GCGC 3 cut(s) 14, 561, 884
KasI GGCGCC 1 cut(s) 560
Kpn2I TCCGGA 2 cut(s) 1870, 2185
Ksp22I TGATCA 1 cut(s) 1893
KspAI GTTAAC 1 cut(s) 1971
Kzo9I GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Lsp1109I GCAGC 3 cut(s) 358, 1388, 1552
LweI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
MaeI CTAG 2 cut(s) 323, 2067
MaeII ACGT 2 cut(s) 1463, 2510
MaeIII GTNAC 7 cut(s) 181, 789, 934, 1499, 1984, 2194, 2296
MalI GATC 6 cut(s) 203, 848, 1290, 1895, 2241, 2448
MbiI CCGCTC 1 cut(s) 172
MboI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
MflI RGATCY 1 cut(s) 2446
MhlI GDGCHC 3 cut(s) 961, 1621, 1767
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 3 cut(s) 189, 512, 2383
MmeI TCCRAC 4 cut(s) 486, 1275, 1377, 1818
Mph1103I ATGCAT 1 cut(s) 2112
MroI TCCGGA 2 cut(s) 1870, 2185
MroXI GAANNNNTTC 2 cut(s) 284, 1955
MslI CAYNNNNRTG 2 cut(s) 1889, 2210
MspA1I CMGCKG 2 cut(s) 623, 878
MspCI CTTAAG 1 cut(s) 2270
MspI CCGG 5 cut(s) 6, 821, 1707, 1871, 2186
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
NarI GGCGCC 1 cut(s) 561
NcoI CCATGG 1 cut(s) 1305
NdeI CATATG 1 cut(s) 1726
NdeII GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
NheI GCTAGC 1 cut(s) 2066
NlaIV GGNNCC 3 cut(s) 448, 562, 2079
NmeAIII GCCGAG 2 cut(s) 589, 636
NmuCI GTSAC 2 cut(s) 181, 1984
NsiI ATGCAT 1 cut(s) 2112
NspI RCATGY 2 cut(s) 380, 1957
PagI TCATGA 1 cut(s) 1428
PceI AGGCCT 1 cut(s) 1418
PciI ACATGT 2 cut(s) 376, 1953
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 2 cut(s) 284, 1955
PfeI GAWTC 5 cut(s) 356, 631, 742, 1244, 2152
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 5 cut(s) 174, 373, 388, 1378, 1567
PleI GAGTC 3 cut(s) 188, 511, 2382
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 3 cut(s) 188, 511, 2382
Ppu21I YACGTR 2 cut(s) 1464, 2511
PscI ACATGT 2 cut(s) 376, 1953
PshBI ATTAAT 2 cut(s) 1938, 2000
PsiI TTATAA 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 448, 562, 2079
PspPI GGNCC 3 cut(s) 446, 707, 2350
PsuI RGATCY 1 cut(s) 2446
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 5 cut(s) 42, 228, 1592, 2063, 2504
RsaNI GTAC 5 cut(s) 41, 227, 1591, 2062, 2503
RseI CAYNNNNRTG 2 cut(s) 1889, 2210
SatI GCNGC 5 cut(s) 173, 372, 387, 1377, 1566
Sau3AI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Sau96I GGNCC 3 cut(s) 446, 707, 2350
SchI GAGTC 3 cut(s) 189, 512, 2383
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 3 cut(s) 961, 1621, 1767
SfaNI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
SfcI CTRYAG 2 cut(s) 1909, 2119
SfoI GGCGCC 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 1889, 2210
SmlI CTYRAG 3 cut(s) 35, 411, 2270
SmoI CTYRAG 3 cut(s) 35, 411, 2270
SnaBI TACGTA 1 cut(s) 2511
SseBI AGGCCT 1 cut(s) 1418
SsiI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
SspDI GGCGCC 1 cut(s) 560
SspI AATATT 1 cut(s) 2415
SspMI CTAG 2 cut(s) 323, 2067
StuI AGGCCT 1 cut(s) 1418
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 1305
TaiI ACGT 2 cut(s) 1466, 2513
TaqI TCGA 2 cut(s) 2140, 2171
TatI WGTACW 2 cut(s) 226, 2502
TauI GCSGC 2 cut(s) 175, 389
TfiI GAWTC 5 cut(s) 356, 631, 742, 1244, 2152
TscAI CASTG 3 cut(s) 190, 966, 1836
TseFI GTSAC 2 cut(s) 181, 1984
TseI GCWGC 3 cut(s) 371, 1376, 1565
Tsp45I GTSAC 2 cut(s) 181, 1984
TspGWI ACGGA 1 cut(s) 2119
TspRI CASTG 3 cut(s) 190, 966, 1836
Vha464I CTTAAG 1 cut(s) 2270
VneI GTGCAC 1 cut(s) 957
VspI ATTAAT 2 cut(s) 1938, 2000
XagI CCTNNNNNAGG 1 cut(s) 2541
XapI RAATTY 2 cut(s) 806, 2045
XceI RCATGY 2 cut(s) 380, 1957
XmiI GTMKAC 1 cut(s) 1912
XmnI GAANNNNTTC 2 cut(s) 284, 1955
XspI CTAG 2 cut(s) 323, 2067
Zsp2I ATGCAT 1 cut(s) 2112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.