Rh7AG288700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004858
Physical Location & Seq
Forward (+)
31137474 .. 31137917
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG288700.1

Sequence Viewer

Length: 444 bp
ATGATTCTGGATGAGCTTGTATCGAGAGGTGTTGTTCCGGACACAGTAACATACAACACTATGATGAATGGTGTTTGTGTTGACATACTGGATCGTGCTATGATTTTAACCGCTAAATTGCTTAAGTTGGCATTTCTTCCAAATGTTGTTACAGCTAATGTATTGTTGTCTCAGTTCCGCAGGCAGGGGATGCCTGAGAAGGCCCTAATGTGGGGTCAGAAGTTGAGTCAGTTTTCCTTTTGTTTTGATGAAATTACCTACAAAATATTGGACAGAGCCTATCATAATATGCAAGAAGATCCTGCAATTCCAAGTGCAACACCTGAGAAAAGCCTCTTCTTGGATTTCCTCATGTACATTACATATGATTATTTATGTAAAAATAAACCTTGCAGAGATGTAAGACAAAACCCTCTTAAAGTAATTGGTCTTAGTGGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.77

Weight (kDa)

7.62

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 26 7.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 111, 178
AclWI GGATC 2 cut(s) 99, 293
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 184, 210, 211, 340
AflII CTTAAG 1 cut(s) 122
AluBI AGCT 2 cut(s) 16, 155
AluI AGCT 2 cut(s) 16, 155
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 99, 293
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 2 cut(s) 201, 436
AspS9I GGNCC 2 cut(s) 202, 437
BcoDI GTCTC 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 202, 437
BmiI GGNNCC 1 cut(s) 439
BmsI GCATC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 210, 211, 340
Bse1I ACTGG 1 cut(s) 93
BseAI TCCGGA 1 cut(s) 37
BseGI GGATG 2 cut(s) 16, 195
BseLI CCNNNNNNNGG 4 cut(s) 184, 210, 211, 340
BseMII CTCAG 3 cut(s) 185, 186, 315
BseNI ACTGG 1 cut(s) 93
BshFI GGCC 2 cut(s) 203, 438
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 184, 210, 211, 340
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 2 cut(s) 203, 438
Bsp13I TCCGGA 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 2 cut(s) 91, 298
BspACI CCGC 2 cut(s) 111, 178
BspANI GGCC 2 cut(s) 203, 438
BspCNI CTCAG 3 cut(s) 184, 187, 316
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 439
BspPI GGATC 2 cut(s) 99, 293
BspTI CTTAAG 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 93
BssMI GATC 2 cut(s) 91, 298
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 341
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 4 cut(s) 171, 195, 324, 431
BstF5I GGATG 2 cut(s) 16, 195
BstKTI GATC 2 cut(s) 94, 301
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 91, 298
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 2 cut(s) 203, 438
BtsCI GGATG 2 cut(s) 16, 195
Cac8I GCNNGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 202, 437
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 16, 155, 203, 278, 333, 438
CviKI_1 RGCY 6 cut(s) 16, 155, 203, 278, 333, 438
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 4 cut(s) 171, 195, 324, 431
DpnI GATC 2 cut(s) 93, 300
DpnII GATC 2 cut(s) 91, 298
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 202
FaeI CATG 1 cut(s) 355
FatI CATG 1 cut(s) 351
FauNDI CATATG 1 cut(s) 364
FokI GGATG 2 cut(s) 23, 202
HaeIII GGCC 2 cut(s) 203, 438
HapII CCGG 1 cut(s) 38
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 4, 226
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 3 cut(s) 8, 24, 38
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 292, 305, 317, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 4 cut(s) 171, 195, 324, 431
Hsp92II CATG 1 cut(s) 355
Kpn2I TCCGGA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 91, 298
LpnPI CCDG 7 cut(s) 51, 74, 166, 170, 207, 315, 336
LweI GCATC 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 46, 148
MalI GATC 2 cut(s) 93, 300
MboI GATC 2 cut(s) 91, 298
MboII GAAGA 3 cut(s) 128, 308, 328
MflI RGATCY 1 cut(s) 298
MluCI AATT 4 cut(s) 116, 252, 306, 423
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 4 cut(s) 20, 344, 359, 423
MroI TCCGGA 1 cut(s) 37
MseI TTAA 3 cut(s) 107, 123, 417
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 91, 298
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 2 cut(s) 202, 437
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 3 cut(s) 107, 123, 417
Sau3AI GATC 2 cut(s) 91, 298
Sau96I GGNCC 2 cut(s) 202, 437
SchI GAGTC 1 cut(s) 235
SetI ASST 6 cut(s) 18, 31, 157, 260, 325, 391
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 116, 252, 306, 423
SsiI CCGC 2 cut(s) 111, 178
SspI AATATT 1 cut(s) 267
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 23
TasI AATT 4 cut(s) 116, 252, 306, 423
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 107, 123, 417
Tru9I TTAA 3 cut(s) 107, 123, 417
TspDTI ATGAA 2 cut(s) 80, 264
Vha464I CTTAAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.